Chromosome 1 - RH Maps - Single Contig

Chromosome 1 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_032954	NT_004350	NT_022058	NT_004321	NT_004547	NT_021917	NT_028054	NT_032970
NT_032967	NT_021937	NT_004488	NT_022041	NT_004873	NT_030584	NT_004572	NT_029218
NT_004610	NT_032979	NT_004391	NT_030571	NT_004782	NT_028053	NT_004538	NT_004511
NT_004852	NT_032963	NT_032971	NT_032972	NT_031724	NT_004386	NT_032978	NT_032977
NT_004424	NT_032976	NT_032965	NT_032973	NT_031689	NT_029223	NT_004641	NT_029865
NT_031737	NT_004636	NT_032948	NT_004464	NT_032953	NT_004483	NT_004302	NT_032960
NT_032956	NT_032974	NT_004902	NT_026943	NT_029231	NT_004658	NT_004686	NT_021979
NT_030565	NT_028050	NT_004308	NT_004623	NT_030567	NT_032957	NT_021977	NT_029860
NT_019273	NT_031697	NT_004754	NT_032961	NT_032975	NT_022052	NT_022071	NT_004434
NT_032962	NT_021907	NT_004441	NT_030577	NT_004858	NT_019291	NT_031708	NT_029226
NT_026945	NT_004982	NT_032952	NT_004668	NT_029874	NT_004487	NT_032958	NT_004599
NT_031716	NT_004671	NT_021909	NT_004416	NT_029862	NT_021905	NT_032947	NT_021877
NT_004612	NT_031718	NT_032950	NT_004525	NT_032955	NT_029863	NT_032951	NT_021953
NT_004861	NT_031696	NT_004908	NT_004559	NT_031728	NT_021973	NT_004753	NT_004433
NT_030561	NT_004836	NT_031685	NT_004771	NT_004734	NT_031700	NT_031719	NT_004536
NT_032964	NT_031732	NT_032966	NT_031730	NT_029870	NT_032969	NT_032968

NT_004782

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_004782	AL606491	24675205	1	RH36283	1	85.62					1		AL606491
S/G/Y/R/B/O	NT_004782	AL606491	24675261	1	RH67401	1	85.62					1		AL606491
S/G/Y/R/B/O	NT_004782	AL606491	24675411	1	RH12580	1	82.39					1		AL606491
S/G/Y/R/B/O	NT_004782	AL031280	24810878	3	RH33829			1	1548.00			1	AL606491,	AL031280, AL356602, AL606491
S/G/Y/R/B/O	NT_004782	AL020996	24890269	3	RH25837	1	85.21					1		AL020996, AL356602
S/G/Y/R/B/O	NT_004782	AL020996	24891640	3	RH64429	1	85.42			1	84.20	1		AL020996, AL356602
S/G/Y/R/B/O	NT_004782	AL020996	24891779	3	RH16973	1	82.39					1		AL020996, AL356602
S/G/Y/R/B/O	NT_004782	AL020996	24892072	3	RH36069	1	85.52					1		AL020996
S/G/Y/R/B/O	NT_004782	AL020996	24892112	3	RH36124	1	82.39					1		AL020996, AL356602
S/G/Y/R/B/O	NT_004782	AL020996	24910584	3	RH67758	1	87.16					1		AJ306398, AL020996
S/G/Y/R/B/O	NT_004782	AL020996	24923887	3	RH69693	1	87.01					1		AJ306398, AL020996
S/G/Y/R/B/O	NT_004782	AL020996	24930867	3	WI-11524					1	85.60	1		AC010855
S/G/Y/R/B/O	NT_004782	AL020996	24930867	3	RH63917	1	82.39					1		AC010855
S/G/Y/R/B/O	NT_004782	AL020996	24938642	3	RH11907	1	85.42					2	AC090439,	AC010855, AC090439, AL020996
S/G/Y/R/B/O	NT_004782	AL020996	24941076	3	RH48467	1	85.31					1		AC010855, AL020996
S/G/Y/R/B/O	NT_004782	AL033528	25006230	3	WI-9053					1	85.60	1		X94912
S/G/Y/R/B/O	NT_004782	AL033528	25006230	3	RH49600	1	85.31					1		X94912
S/G/Y/R/B/O	NT_004782	AL033528	25006306	3	RH70969	1	82.39					1		AL033528, AL355525, M31303
S/G/Y/R/B/O	NT_004782	AL033528	25006344	3	RH26022	1	83.60					1		AL033528, AL355525, M31303, X94912
S/G/Y/R/B/O	NT_004782	AL645996	25026716	3
S/G/Y/R/B/O	NT_004782	AL592064	25056290	3	RH92801	1	85.62					1		AC010855, AL355525, AL592064
S/G/Y/R/B/O	NT_004782	AL592064	25065872	3	RH69464	1	82.39					1		AC010855, AL355525, AL592064
S/G/Y/R/B/O	NT_004782	AL592064	25065917	3	RH75076	1	87.06					1		AC010855, AL355525, AL592064
S/G/Y/R/B/O	NT_004782	AL592064	25067488	3	RH75820	1	85.52					1		AC010855, AL355525, AL592064
S/G/Y/R/B/O	NT_004782	AL391650	25142210	2	WI-21113					1	85.60	1		AF153980, AL391650
S/G/Y/R/B/O	NT_004782	AL391650	25142210	2	RH50159	1	85.42					1		AF153980, AL391650
S/G/Y/R/B/O	NT_004782	AL391650	25142348	2	RH76511	1	82.59					1		AF153980, AL391650
S/G/Y/R/B/O	NT_004782	AL391650	25144145	2	WI-17216					9	307.80	1		AL391650
S/G/Y/R/B/O	NT_004782	AL391650	25154695	2	RH67306	1	82.39					1		AL391650
S/G/Y/R/B/O	NT_004782	AL391650	25157411	2	RH41902	1	85.31					1		AL391650
S/G/Y/R/B/O	NT_004782	AL391650	25231321	2	RH36615	1	85.52					1		AL355859, AL391650
S/G/Y/R/B/O	NT_004782	AL391650	25231339	2	RH67465	1	82.39					1		AL355859, AL391650
S/G/Y/R/B/O	NT_004782	AL391650	25276518	2	RH49746	1	87.06			1	87.30	1		AL355859, AL391650
S/G/Y/R/B/O	NT_004782	AL391650	25276751	2	RH41960	1	87.16					1		AL355859, AL391650
S/G/Y/R/B/O	NT_004782	AL391650	25276771	2	RH80379	1	86.96					1		AL355859, AL391650
S/G/Y/R/B/O	NT_004782	AL391650	25295723	2	RH75167	1	88.30					1	AL355877,	AL355859, AL355877, AL391650
S/G/Y/R/B/O	NT_004782	AL391650	25295753	2	RH67008	1	87.06					1	AL355877,	AL355859, AL355877, AL391650
S/G/Y/R/B/O	NT_004782	AL355877	25308848	3	RH92197	1	88.51					1		AL355859, AL355877
S/G/Y/R/B/O	NT_004782	AL451139	25384562	1	RH102252	1	88.61					1		AL451139
S/G/Y/R/B/O	NT_004782	AL451139	25387345	1	RH91491	1	89.02					1		AL451139
S/G/Y/R/B/O	NT_004782	AL451139	25387382	1	RH80614	1	88.30					1		AL451139
S/G/Y/R/B/O	NT_004782	AL451139	25426396	1	WI-8976					1	88.50	1		AL451139
S/G/Y/R/B/O	NT_004782	AL451139	25426396	1	RH71015	1	88.61					1		AL451139
S/G/Y/R/B/O	NT_004782	AL451139	25427974	1	RH69989	1	87.01					1		AL451139
S/G/Y/R/B/O	NT_004782	AL513365	25575533	3	RH11127	1	88.41					2	AL627313,	AL513365, AL627313
S/G/Y/R/B/O	NT_004782		-		RH71226	1	88.30					1	AC022307,	AC022307, AL121991