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  Chromosome 1 - RH Maps - Single Contig
 

Chromosome 1 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_032954 NT_004350 NT_022058 NT_004321 NT_004547 NT_021917 NT_028054 NT_032970
NT_032967 NT_021937 NT_004488 NT_022041 NT_004873 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_030571 NT_004782 NT_028053 NT_004538 NT_004511
NT_004852 NT_032963 NT_032971 NT_032972 NT_031724 NT_004386 NT_032978 NT_032977
NT_004424 NT_032976 NT_032965 NT_032973 NT_031689 NT_029223 NT_004641 NT_029865
NT_031737 NT_004636 NT_032948 NT_004464 NT_032953 NT_004483 NT_004302 NT_032960
NT_032956 NT_032974 NT_004902 NT_026943 NT_029231 NT_004658 NT_004686 NT_021979
NT_030565 NT_028050 NT_004308 NT_004623 NT_030567 NT_032957 NT_021977 NT_029860
NT_019273 NT_031697 NT_004754 NT_032961 NT_032975 NT_022052 NT_022071 NT_004434
NT_032962 NT_021907 NT_004441 NT_030577 NT_004858 NT_019291 NT_031708 NT_029226
NT_026945 NT_004982 NT_032952 NT_004668 NT_029874 NT_004487 NT_032958 NT_004599
NT_031716 NT_004671 NT_021909 NT_004416 NT_029862 NT_021905 NT_032947 NT_021877
NT_004612 NT_031718 NT_032950 NT_004525 NT_032955 NT_029863 NT_032951 NT_021953
NT_004861 NT_031696 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433
NT_030561 NT_004836 NT_031685 NT_004771 NT_004734 NT_031700 NT_031719 NT_004536
NT_032964 NT_031732 NT_032966 NT_031730 NT_029870 NT_032969 NT_032968


  NT_032972
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_032972AL390776435212293RH34536  12381.00  2 AC023953, AL390776
S/G/Y/R/B/O NT_032972AL390776435417943RH6563315318.78    2 AC004254, AC023953, AL390776
S/G/Y/R/B/O NT_032972AL359373435809913          
S/G/Y/R/B/O NT_032972AL596225437942083WI-19393    1152.301 AC016328, AC019268, AL355883, AL596225
S/G/Y/R/B/O NT_032972AL596225437942083RH500631130.08    1 AC016328, AC019268, AL355883, AL596225
S/G/Y/R/B/O NT_032972AL122004438456823RH693451129.79    1 AC011168, AC016328, AC019268, AL122004
S/G/Y/R/B/O NT_032972AL122004438615363RH786081130.08    1 AC011168, AC016328, AC019268, AL122004
S/G/Y/R/B/O NT_032972AL122004438617653RH639011140.76  1152.801 AC011168, AC016328, AC019268, AL122004
S/G/Y/R/B/O NT_032972AL122004438618963RH645331140.86    1 AC011168, AC016328, AC019268, AL122004
S/G/Y/R/B/O NT_032972AL122004438619233RH417921133.01    1 AC011168, AC016328, AC019268, AL122004
S/G/Y/R/B/O NT_032972AL122004438642923RH658691131.85    1 AC019268, AL122004
S/G/Y/R/B/O NT_032972AL122004438646173RH126891142.13    1 AC019268, AL122004
S/G/Y/R/B/O NT_032972AL122004438646183WI-18517    1152.801 AC019268, AL122004
S/G/Y/R/B/O NT_032972AL122004438646183RH505651130.91    1 AC019268, AL122004
S/G/Y/R/B/O NT_032972AL122004438649473RH754721127.56    1 AC019268, AL122004
S/G/Y/R/B/O NT_032972AL122004438991233RH458201142.50    1 AL122004
S/G/Y/R/B/O NT_032972AL122004439112133RH983871140.76    1 AL122004
S/G/Y/R/B/O NT_032972AL592166439776363RH759031142.93    1 AL592166, AL611928
S/G/Y/R/B/O NT_032972AL592166439777433RH678811130.08    1 AL592166, AL611928
S/G/Y/R/B/O NT_032972AL592166439886043WI-1404    1152.801 AL592166, AL611928, X67247
S/G/Y/R/B/O NT_032972AL592166439886043RH507021132.59    1 AL592166, AL611928, X67247
S/G/Y/R/B/O NT_032972AL592166440014153D1S421    1152.801 AL592166, AL611928
S/G/Y/R/B/O NT_032972AL592166440160253RH706771140.97    1 AL592166, AL611928
S/G/Y/R/B/O NT_032972AL592166440305183RH1026611130.18    1 AL592166, AL611928
S/G/Y/R/B/O NT_032972AL136380440369043          
S/G/Y/R/B/O NT_032972AL359473442129343RH258201132.38    1 AL359473
S/G/Y/R/B/O NT_032972AL359473442257363RH788941131.43    1 AF047383, AL359473, U30787, X89267
S/G/Y/R/B/O NT_032972AL359473442257603RH176621130.08    1 AF047383, AL359473, U30787, X89267
S/G/Y/R/B/O NT_032972AL359473442258043WI-18590    1152.801 AF047383, AL359473, U30787, X89267
S/G/Y/R/B/O NT_032972AL359473442258043RH506631129.98    1 AF047383, AL359473, U30787, X89267
S/G/Y/R/B/O NT_032972AL359473442269143RH990991129.98    3AC005224, AC005304, AC005224, AC005304, AL359473
S/G/Y/R/B/O NT_032972AL592294443504622TIGR-A004V29    1152.802AC015534, AC026857, AC015534, AC026857, AL390915, AL391596, AL391664, AL592294
S/G/Y/R/B/O NT_032972AL592294443504622RH504291132.23    2AC015534, AC026857, AC015534, AC026857, AL390915, AL391596, AL391664, AL592294
S/G/Y/R/B/O NT_032972AL592294444187972RH499151142.93    1 AL391596, AL391664, AL592294
S/G/Y/R/B/O NT_032972AL592294444187972WI-21196    1169.601 AL391596, AL391664, AL592294
S/G/Y/R/B/O NT_032972AL592294444196932RH462731142.50    1 AL391596, AL391664, AL592294
S/G/Y/R/B/O NT_032972AL645758444595943          
S/G/Y/R/B/O NT_032972AC026857444983561          
S/G/Y/R/B/O NT_032972 - RH118291139.41    1AL513331, AL355801, AL513331
S/G/Y/R/B/O NT_032972 - RH1860  12378.00  1AL356793, AL356793
S/G/Y/R/B/O NT_032972 - WI-14181    1152.800AL136380, AL136380
S/G/Y/R/B/O NT_032972 - RH158561141.46    1AL137853, AC024511, AF325340, AL137853, AL713993
S/G/Y/R/B/O NT_032972 - RH258831139.72    2AL512599, AL663070, AF022211, AL512599, AL663070, L42809
S/G/Y/R/B/O NT_032972 - RH259111139.41    1AL513331, AL355801, AL513331
S/G/Y/R/B/O NT_032972 - RH270971139.82    0  
S/G/Y/R/B/O NT_032972 - RH462621142.19    1AC023038, AC114493, AL137791, AC023038, AC114493, AL137791, AL356780
S/G/Y/R/B/O NT_032972 - RH465961139.51    1AL050341, AL050341
S/G/Y/R/B/O NT_032972 - RH471661142.50    0AC025492, AC025492, AL356673
S/G/Y/R/B/O NT_032972 - RH496081139.62    1AC023225, AC104336, AC022557, AC023225, AC104336, AL513473
S/G/Y/R/B/O NT_032972 - RH643481140.03    1AL034379, AL513220, AL034379, AL355880, AL513220


  NT_032972 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_032972 - RH643291141.67    1AL513331, AL355801, AL513331
S/G/Y/R/B/O NT_032972 - RH644151141.18    1AL034379, AL034379, AL355880
S/G/Y/R/B/O NT_032972 - RH713421142.50    0  
S/G/Y/R/B/O NT_032972 - RH799521141.56    1AL606484, AL162262, AL606484, AL663046