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  Chromosome 1 - RH Maps - Single Contig
 

Chromosome 1 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_032954 NT_004350 NT_022058 NT_004321 NT_004547 NT_021917 NT_028054 NT_032970
NT_032967 NT_021937 NT_004488 NT_022041 NT_004873 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_030571 NT_004782 NT_028053 NT_004538 NT_004511
NT_004852 NT_032963 NT_032971 NT_032972 NT_031724 NT_004386 NT_032978 NT_032977
NT_004424 NT_032976 NT_032965 NT_032973 NT_031689 NT_029223 NT_004641 NT_029865
NT_031737 NT_004636 NT_032948 NT_004464 NT_032953 NT_004483 NT_004302 NT_032960
NT_032956 NT_032974 NT_004902 NT_026943 NT_029231 NT_004658 NT_004686 NT_021979
NT_030565 NT_028050 NT_004308 NT_004623 NT_030567 NT_032957 NT_021977 NT_029860
NT_019273 NT_031697 NT_004754 NT_032961 NT_032975 NT_022052 NT_022071 NT_004434
NT_032962 NT_021907 NT_004441 NT_030577 NT_004858 NT_019291 NT_031708 NT_029226
NT_026945 NT_004982 NT_032952 NT_004668 NT_029874 NT_004487 NT_032958 NT_004599
NT_031716 NT_004671 NT_021909 NT_004416 NT_029862 NT_021905 NT_032947 NT_021877
NT_004612 NT_031718 NT_032950 NT_004525 NT_032955 NT_029863 NT_032951 NT_021953
NT_004861 NT_031696 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433
NT_030561 NT_004836 NT_031685 NT_004771 NT_004734 NT_031700 NT_031719 NT_004536
NT_032964 NT_031732 NT_032966 NT_031730 NT_029870 NT_032969 NT_032968


  NT_004464
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004464AL691520690577351          
S/G/Y/R/B/O NT_004464AC031997692257161          
S/G/Y/R/B/O NT_004464AL356106692853503          
S/G/Y/R/B/O NT_004464AL358854693378293          
S/G/Y/R/B/O NT_004464AL512271694209373          
S/G/Y/R/B/O NT_004464AL157406695716283RH491371191.33  1211.801 AC021495
S/G/Y/R/B/O NT_004464AL157406695716283RH35092  13653.00  1 AC021495
S/G/Y/R/B/O NT_004464AL359894697853203RH491431189.50    1 AL139153, AL359894
S/G/Y/R/B/O NT_004464AL359894697854073RH33500  13644.00  1 AL139153, AL359894
S/G/Y/R/B/O NT_004464AL117353698762083GCT17A04    1212.101 AL117353, AL139153
S/G/Y/R/B/O NT_004464AL117353698873283RH642511187.38    1 AL117353
S/G/Y/R/B/O NT_004464AL117353698873283WI-15123    1225.401 AL117353
S/G/Y/R/B/O NT_004464AL359412699472853          
S/G/Y/R/B/O NT_004464AL391728700740102RH259181187.38    1 AC055743
S/G/Y/R/B/O NT_004464AL391728700748952RH645841189.50    1 AC055743, AL391728
S/G/Y/R/B/O NT_004464AL391728700775102RH654501230.39    1 AC055743, AL391728
S/G/Y/R/B/O NT_004464AL391728701166802RH1040981187.58    1 AL391728
S/G/Y/R/B/O NT_004464AL158840702050063RH14624  13558.00  1 AC025738, AL158840
S/G/Y/R/B/O NT_004464AL158840702050483RH781551187.68    1 AC025738, AL158840
S/G/Y/R/B/O NT_004464AL157948702471303          
S/G/Y/R/B/O NT_004464AL353771703404513RH181931230.39    1 AC019213, AL353771
S/G/Y/R/B/O NT_004464AL353771703414623WI-15590    1216.701 AC019213, AL353771
S/G/Y/R/B/O NT_004464AL353771703414623RH643301230.39    1 AC019213, AL353771
S/G/Y/R/B/O NT_004464AL353771704009743D1S462    1212.101 AC019213, AL353771
S/G/Y/R/B/O NT_004464AL353771704009743RH29921  13539.00  1 AC019213, AL353771
S/G/Y/R/B/O NT_004464AL353771704188213RH704281191.53    1 AC019213, AL353771
S/G/Y/R/B/O NT_004464AL353771704471583RH508171189.50  1216.101 AC019213, AL353771
S/G/Y/R/B/O NT_004464AL353771704479303RH691721191.53    1 AC019213, AL353771
S/G/Y/R/B/O NT_004464AL353771704491273RH117491190.93    1 AC019213, AL353771
S/G/Y/R/B/O NT_004464AL353771704553583RH498981191.53    1 AC019213, AL353771
S/G/Y/R/B/O NT_004464AL353771704553583WI-21498    1210.601 AC019213, AL353771
S/G/Y/R/B/O NT_004464AL353771704570163RH483511191.53    1 AC019213, AL353771
S/G/Y/R/B/O NT_004464AL353771704575923RH505801189.60  1216.701 AC019213, AL353771
S/G/Y/R/B/O NT_004464AL353771704584673RH1028251230.39    1 AC019213, AL353771
S/G/Y/R/B/O NT_004464AL353771704641343RH926991191.53    1 AC019213, AL353771
S/G/Y/R/B/O NT_004464AL354721705135933RH924201189.60    1 AC019213, AL354721
S/G/Y/R/B/O NT_004464AL158839705246823          
S/G/Y/R/B/O NT_004464AL354872706074783RH923201187.38    1 AC026545, AL354872
S/G/Y/R/B/O NT_004464AL354872706350433RH713971192.27    1 AC026545, AL354872
S/G/Y/R/B/O NT_004464AL354872706351663RH426131187.68    1 AC026545
S/G/Y/R/B/O NT_004464AL354872706351663RH932  13532.00  1 AC026545
S/G/Y/R/B/O NT_004464AL354872706417223RH478881188.89    1 AC026545, AL354872
S/G/Y/R/B/O NT_004464AL592104707405703          
S/G/Y/R/B/O NT_004464AL513285708720593          
S/G/Y/R/B/O NT_004464AL662898709680373          
S/G/Y/R/B/O NT_004464AL158087710487433RH507251189.6013505.001216.701 AL139422, AL158087
S/G/Y/R/B/O NT_004464AL031429711671413RH710171189.89    1 AL031429, AL139422
S/G/Y/R/B/O NT_004464AL031429711693933CHLC.GATA85C01    1211.201 AL031429
S/G/Y/R/B/O NT_004464AL031429712032173RH502151189.60  1216.701 AL031429
S/G/Y/R/B/O NT_004464AL031429712032383RH367411187.68    1  


  NT_004464 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004464AL031429712168613RH491331187.68    1 AL031429
S/G/Y/R/B/O NT_004464AL031429712168613RH34819  13487.00  1 AL031429
S/G/Y/R/B/O NT_004464AL512443712596463RH682141191.53    1 AL512443
S/G/Y/R/B/O NT_004464AL512443712597673RH37945  13476.00  1 AL512443
S/G/Y/R/B/O NT_004464AL512443712599083RH646891189.60    1 AL512443
S/G/Y/R/B/O NT_004464AL512443712621193RH359941191.53    1 AL512443
S/G/Y/R/B/O NT_004464AL512443712623533RH475231189.60    1 AL512443
S/G/Y/R/B/O NT_004464AL512443712651843RH683771189.19    1 AL512443
S/G/Y/R/B/O NT_004464AL512443712664753RH175371191.53    1 AL512443
S/G/Y/R/B/O NT_004464AL512443712726583RH646361189.60    1 AL512443
S/G/Y/R/B/O NT_004464AL360297713068533          
S/G/Y/R/B/O NT_004464AL358453714747343          
S/G/Y/R/B/O NT_004464AL627317715992983RH641991187.58  1216.701 AC027532, AC113411, AL627317
S/G/Y/R/B/O NT_004464AL627317716005313RH678911191.53    1 AC027532, AC113411, AL627317
S/G/Y/R/B/O NT_004464AL627317716704403AFMB280XC1    1216.201 AL627317
S/G/Y/R/B/O NT_004464AL354949716733023          
S/G/Y/R/B/O NT_004464AL355590718518711          
S/G/Y/R/B/O NT_004464AL359821718856453          
S/G/Y/R/B/O NT_004464AL356600720533723WI-4469    1225.401 AC009694, AL158079, AL356600
S/G/Y/R/B/O NT_004464AL356600721224603WI-5356    1212.102AC009692, AC009692, AC009694, AL356600
S/G/Y/R/B/O NT_004464AL356600721261273RH638131189.60  1216.201 AC009694
S/G/Y/R/B/O NT_004464AL391239721330533          
S/G/Y/R/B/O NT_004464AL645767722054213          
S/G/Y/R/B/O NT_004464AL513349722371393          
S/G/Y/R/B/O NT_004464AL365362724703893RH807381048.14    2AC053504, AL596094, AC021592, AC053504, AL365362, AL596094
S/G/Y/R/B/O NT_004464AL365362724712213RH644951187.68    1 AC021592, AL365362
S/G/Y/R/B/O NT_004464AL645724724807113RH158511193.62    1 AC021592, AL645724
S/G/Y/R/B/O NT_004464AL512292724840883          
S/G/Y/R/B/O NT_004464AL365254726174853          
S/G/Y/R/B/O NT_004464AL513166727731943          
S/G/Y/R/B/O NT_004464AL139149729420113          
S/G/Y/R/B/O NT_004464AL583808729619693          
S/G/Y/R/B/O NT_004464 - RH123161191.36    1AC018404, AC098692, AL354708, AC018404, AC098692, AL354708
S/G/Y/R/B/O NT_004464 - RH29945  13607.00  1AL033530, AC024894, AL033530
S/G/Y/R/B/O NT_004464 - CHLC.GATA26C12    1212.100  
S/G/Y/R/B/O NT_004464 - RH171611191.64    1AC010986, AL513284, AC010986, AL161795, AL513284
S/G/Y/R/B/O NT_004464 - RH30679  13637.00  1AL391703, AC046169, AL391703
S/G/Y/R/B/O NT_004464 - CHLC.GATA5G07.526    1216.101AL591463, AL591463
S/G/Y/R/B/O NT_004464 - RH258251189.50    1AC018404, AC098692, AL354708, AC018404, AC098692, AL354708
S/G/Y/R/B/O NT_004464 - RH32218  13637.00  1AL139413, AL139413
S/G/Y/R/B/O NT_004464 - CHLC.GATA61A06    1216.701AL591463, AL591463
S/G/Y/R/B/O NT_004464 - RH445801190.20    1AC015897, AC019284, AC015897, AC019284
S/G/Y/R/B/O NT_004464 - RH38134  13622.00  1AL358512, AL358512
S/G/Y/R/B/O NT_004464 - RH499071190.59    1AC018404, AC098692, AL354708, AC018404, AC098692, AL354708
S/G/Y/R/B/O NT_004464 - RH9082  13501.00  1AC008733, AC008375, AC008733, AC009194, AC017110, AC073640
S/G/Y/R/B/O NT_004464 - RH502881190.30    1AC093158, AC093158
S/G/Y/R/B/O NT_004464 - RH639461187.68  1216.701AC018404, AC098692, AL354708, AC018404, AC098692, AL354708
S/G/Y/R/B/O NT_004464 - RH507811191.36    1AC015897, AC019284, AC015897, AC019284
S/G/Y/R/B/O NT_004464 - RH646551190.00    1AC027384, AC073499, AL357732, AC027384, AC073499, AL357732
S/G/Y/R/B/O NT_004464 - RH647601189.50    1AC009418, AC009418, L31526


  NT_004464 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004464 - RH683551191.33    0  
S/G/Y/R/B/O NT_004464 - RH923191191.36    1AC015897, AC019284, AC096950, AC015897, AC019284, AC096950