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  Chromosome 1 - RH Maps - Single Contig
 

Chromosome 1 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_032954 NT_004350 NT_022058 NT_004321 NT_004547 NT_021917 NT_028054 NT_032970
NT_032967 NT_021937 NT_004488 NT_022041 NT_004873 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_030571 NT_004782 NT_028053 NT_004538 NT_004511
NT_004852 NT_032963 NT_032971 NT_032972 NT_031724 NT_004386 NT_032978 NT_032977
NT_004424 NT_032976 NT_032965 NT_032973 NT_031689 NT_029223 NT_004641 NT_029865
NT_031737 NT_004636 NT_032948 NT_004464 NT_032953 NT_004483 NT_004302 NT_032960
NT_032956 NT_032974 NT_004902 NT_026943 NT_029231 NT_004658 NT_004686 NT_021979
NT_030565 NT_028050 NT_004308 NT_004623 NT_030567 NT_032957 NT_021977 NT_029860
NT_019273 NT_031697 NT_004754 NT_032961 NT_032975 NT_022052 NT_022071 NT_004434
NT_032962 NT_021907 NT_004441 NT_030577 NT_004858 NT_019291 NT_031708 NT_029226
NT_026945 NT_004982 NT_032952 NT_004668 NT_029874 NT_004487 NT_032958 NT_004599
NT_031716 NT_004671 NT_021909 NT_004416 NT_029862 NT_021905 NT_032947 NT_021877
NT_004612 NT_031718 NT_032950 NT_004525 NT_032955 NT_029863 NT_032951 NT_021953
NT_004861 NT_031696 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433
NT_030561 NT_004836 NT_031685 NT_004771 NT_004734 NT_031700 NT_031719 NT_004536
NT_032964 NT_031732 NT_032966 NT_031730 NT_029870 NT_032969 NT_032968


  NT_032963
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_032963AL139289423420653RH100681125.97    1 AL139289, AL355519
S/G/Y/R/B/O NT_032963AL139289423420743RH159831125.97    1 AL139289, AL355519
S/G/Y/R/B/O NT_032963AL139289423625743RH128281125.97    1AC093420, AC093420, AL139289, AL355488, AL355519, AL356007
S/G/Y/R/B/O NT_032963AL139289423626383RH257431129.36    1AC093420, AC093420, AL139289, AL355488, AL355519, AL356007
S/G/Y/R/B/O NT_032963AL139289423714933RH470181139.31    1AC093420, AC093420, AL139289
S/G/Y/R/B/O NT_032963AL139289423731753RH802311129.98    1AC093420, AC093420, AL139289, AL356007, U68162
S/G/Y/R/B/O NT_032963AL139289424030973RH638291129.36  1145.301AC093420, AC093420, AL139289, AL355488, AL356007
S/G/Y/R/B/O NT_032963AL139289424030973RH702641129.36    1AC093420, AC093420, AL139289, AL355488, AL356007
S/G/Y/R/B/O NT_032963AL139289424030973RH14145  12350.00  1AC093420, AC093420, AL139289, AL355488, AL356007
S/G/Y/R/B/O NT_032963AL139289424031583RH708541129.48    1AC093420, AC093420, AL139289, AL355488, AL356007
S/G/Y/R/B/O NT_032963AC093420424639321RH654871133.84    1 AC093420, AL356007
S/G/Y/R/B/O NT_032963AC093420427512491RH482111139.31    1AC025504, AC025504, AC093420
S/G/Y/R/B/O NT_032963AC093420427806041RH1032951129.48    1 AC093420, AL355488, AL356007
S/G/Y/R/B/O NT_032963AC025504424731831RH801161129.17    1AL391554, AC025504, AL161637, AL391554
S/G/Y/R/B/O NT_032963AC025504426818651RH699721132.38    1AL391554, AC025504, AL391554
S/G/Y/R/B/O NT_032963AC025504426819591RH643791129.36  1145.501AL391554, AC025504, AL391554
S/G/Y/R/B/O NT_032963AC025504426903871RH117741129.36    1AL391554, AC025504, AL391554
S/G/Y/R/B/O NT_032963AL391554424753261RH21361133.74  1148.101 AL161637, AL391554
S/G/Y/R/B/O NT_032963AL358236425208981RH779481129.07    2AC099795, AC099795, AL161637, AL358236
S/G/Y/R/B/O NT_032963AL358236425317401RH1019471132.49    2AC023331, AC099795, AC023331, AC099795, AL358236
S/G/Y/R/B/O NT_032963AL139138426973953RH645461129.36    1AC025504, AL391554, AC025504, AL391554
S/G/Y/R/B/O NT_032963 - RH1019461137.30    0  
S/G/Y/R/B/O NT_032963 - RH1026611130.18    1AL592166, AL592166, AL611928
S/G/Y/R/B/O NT_032963 - RH103061129.36    0  
S/G/Y/R/B/O NT_032963 - RH1034241129.36    0 AL355519
S/G/Y/R/B/O NT_032963 - RH502721131.85    1AC005038, AC005038, AL357079
S/G/Y/R/B/O NT_032963 - RH1045221131.85    1AC073835, AL033526, AL035404, AC073835, AL033526, AL035404
S/G/Y/R/B/O NT_032963 - RH1045411132.59    0  
S/G/Y/R/B/O NT_032963 - RH127711132.17    1AC005038, AL139220, AC005038, AL139220, AL357079
S/G/Y/R/B/O NT_032963 - RH176621130.08    1AL359473, AF047383, AL359473, U30787, X89267
S/G/Y/R/B/O NT_032963 - RH182951130.29    1AL359540, AL359540
S/G/Y/R/B/O NT_032963 - RH258201132.38    1AL359473, AL359473
S/G/Y/R/B/O NT_032963 - RH263571130.49    1AC025492, AL451136, AC025492, AL356673, AL451136
S/G/Y/R/B/O NT_032963 - RH358861133.01    1AC005193, AL451062, AC005193, AC011772, AL451062
S/G/Y/R/B/O NT_032963 - RH644921135.69    1AL031289, AL354914, AL031289, AL354914
S/G/Y/R/B/O NT_032963 - RH417921133.01    1AL122004, AC011168, AC016328, AC019268, AL122004
S/G/Y/R/B/O NT_032963 - RH418901132.23    1AC005038, AC005051, AC005038, AC005051, AL357079
S/G/Y/R/B/O NT_032963 - RH461761130.18    1AC005038, AC005051, AC005038, AC005051, AL357079
S/G/Y/R/B/O NT_032963 - RH474611137.30    0 AL035417
S/G/Y/R/B/O NT_032963 - RH491441137.30    0 AL512786, AL583862
S/G/Y/R/B/O NT_032963 - RH498301131.75    1AC005193, AL451062, AC005193, AC011772, AL451062
S/G/Y/R/B/O NT_032963 - RH644241129.98    1AC004950, AC004950, AL592548
S/G/Y/R/B/O NT_032963 - RH500631130.08    1AL596225, AC016328, AC019268, AL355883, AL596225
S/G/Y/R/B/O NT_032963 - RH643441129.98    0 AC005043, AL035417
S/G/Y/R/B/O NT_032963 - RH504291132.23    2AC015534, AC026857, AL592294, AC015534, AC026857, AL390915, AL391596, AL391664, AL592294
S/G/Y/R/B/O NT_032963 - RH642131134.78    1AC023331, AL512353, AC023331, AL512353
S/G/Y/R/B/O NT_032963 - RH505651130.91    1AL122004, AC019268, AL122004
S/G/Y/R/B/O NT_032963 - RH644631134.78    1AL512353, AL512353
S/G/Y/R/B/O NT_032963 - RH643781132.64    1AL365277, AC024511, AF325343, AL365277, AL713993
S/G/Y/R/B/O NT_032963 - RH644521131.54    0AL136380, AL136380


  NT_032963 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_032963 - RH506631129.98    1AL359473, AF047383, AL359473, U30787, X89267
S/G/Y/R/B/O NT_032963 - RH507021132.59    1AL592166, AL592166, AL611928, X67247
S/G/Y/R/B/O NT_032963 - RH644881137.20    1AC105268, AC013579, AC105268
S/G/Y/R/B/O NT_032963 - RH645891134.37    1AL031985, AL603839, AL031985, AL603839
S/G/Y/R/B/O NT_032963 - RH647671130.39    1AL604028, AL604028
S/G/Y/R/B/O NT_032963 - RH658691131.85    1AL122004, AC019268, AL122004
S/G/Y/R/B/O NT_032963 - RH666141130.39    0AC016521, AC022182, AC016521, AC022182
S/G/Y/R/B/O NT_032963 - RH678811130.08    1AL592166, AL592166, AL611928
S/G/Y/R/B/O NT_032963 - RH686521130.39    1AL359540, AL359540
S/G/Y/R/B/O NT_032963 - RH693451129.79    1AL122004, AC011168, AC016328, AC019268, AL122004
S/G/Y/R/B/O NT_032963 - RH696511130.39    1AC025492, AL451136, AC025492, AL356673, AL451136
S/G/Y/R/B/O NT_032963 - RH697281131.50    1AL355480, AL355480
S/G/Y/R/B/O NT_032963 - RH704921129.36    0 AL512786, AL583862
S/G/Y/R/B/O NT_032963 - RH757531133.01    0  
S/G/Y/R/B/O NT_032963 - RH767381130.70    1AL355480, AL355480
S/G/Y/R/B/O NT_032963 - RH786081130.08    1AL122004, AC011168, AC016328, AC019268, AL122004
S/G/Y/R/B/O NT_032963 - RH786921129.98    1AC005038, AL139220, AC005038, AL139220, AL357079
S/G/Y/R/B/O NT_032963 - RH788941131.43    1AL359473, AF047383, AL359473, U30787, X89267
S/G/Y/R/B/O NT_032963 - RH801431133.01    0 AL355519, AL583862
S/G/Y/R/B/O NT_032963 - RH804121129.79    1 AC004254
S/G/Y/R/B/O NT_032963 - RH919421134.78    1AC098484, AL512353, AC098484, AL512353
S/G/Y/R/B/O NT_032963 - RH987401130.39    0  
S/G/Y/R/B/O NT_032963 - RH990991129.98    3AC005224, AC005304, AL359473, AC005224, AC005304, AL359473