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  Chromosome 1 - RH Maps - Single Contig
 

Chromosome 1 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_032954 NT_004350 NT_022058 NT_004321 NT_004547 NT_021917 NT_028054 NT_032970
NT_032967 NT_021937 NT_004488 NT_022041 NT_004873 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_030571 NT_004782 NT_028053 NT_004538 NT_004511
NT_004852 NT_032963 NT_032971 NT_032972 NT_031724 NT_004386 NT_032978 NT_032977
NT_004424 NT_032976 NT_032965 NT_032973 NT_031689 NT_029223 NT_004641 NT_029865
NT_031737 NT_004636 NT_032948 NT_004464 NT_032953 NT_004483 NT_004302 NT_032960
NT_032956 NT_032974 NT_004902 NT_026943 NT_029231 NT_004658 NT_004686 NT_021979
NT_030565 NT_028050 NT_004308 NT_004623 NT_030567 NT_032957 NT_021977 NT_029860
NT_019273 NT_031697 NT_004754 NT_032961 NT_032975 NT_022052 NT_022071 NT_004434
NT_032962 NT_021907 NT_004441 NT_030577 NT_004858 NT_019291 NT_031708 NT_029226
NT_026945 NT_004982 NT_032952 NT_004668 NT_029874 NT_004487 NT_032958 NT_004599
NT_031716 NT_004671 NT_021909 NT_004416 NT_029862 NT_021905 NT_032947 NT_021877
NT_004612 NT_031718 NT_032950 NT_004525 NT_032955 NT_029863 NT_032951 NT_021953
NT_004861 NT_031696 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433
NT_030561 NT_004836 NT_031685 NT_004771 NT_004734 NT_031700 NT_031719 NT_004536
NT_032964 NT_031732 NT_032966 NT_031730 NT_029870 NT_032969 NT_032968


  NT_004350
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004350AL1627416981281RH69218115.89    2AL390719, AL162741, AL390719
S/G/Y/R/B/O NT_004350AL1627417159191RH50230111.01  16.801 AL162741
S/G/Y/R/B/O NT_004350AL1627417358421RH64387115.89  110.301 AL162741
S/G/Y/R/B/O NT_004350AL1627417361221RH47530115.89    1 AL162741
S/G/Y/R/B/O NT_004350AL1392877715651RH70619115.89    1AL162741, AL096805, AL139287, AL162741
S/G/Y/R/B/O NT_004350AL1392877726291RH65275115.89    1AL162741, AL096805, AL139287, AL162741
S/G/Y/R/B/O NT_004350AL1392877914811RH91825115.89    1 AL139287
S/G/Y/R/B/O NT_004350AL1392878153281RH68255115.89    1AC026283, AC026283, AL139287
S/G/Y/R/B/O NT_004350AL1392878154431RH4725418.18    1AC026283, AC026283, AL139287
S/G/Y/R/B/O NT_004350AL1392878670691RH4193515.06    1AC026283, AC026283, AL139287
S/G/Y/R/B/O NT_004350AC0262838796951RH18260115.89    1 AC026283
S/G/Y/R/B/O NT_004350AC0262838798971RH63916115.89  110.301 AC026283
S/G/Y/R/B/O NT_004350AL3912448840913RH26384115.89    1AC026283, AC026283, AL391244
S/G/Y/R/B/O NT_004350AL3912448949413RH24933111.42    1AC026283, AC026283, AL391244
S/G/Y/R/B/O NT_004350AL3912448949923RH15933115.89    1AC026283, AC026283, AL391244
S/G/Y/R/B/O NT_004350AL3912448968143RH103727115.89    1AC026283, AC026283, AL391244
S/G/Y/R/B/O NT_004350AL3912449304253RH8020113.62    1AC026283, AC026283, AC093615, AL391244
S/G/Y/R/B/O NT_004350AL3912449336213RH16652115.89    1AC026283, AC026283, AC093615, AL391244
S/G/Y/R/B/O NT_004350AL3912449336623RH47517113.15    1AC026283, AC026283, AC093615, AL391244
S/G/Y/R/B/O NT_004350AL1579459502393          
S/G/Y/R/B/O NT_004350AL64572810025751RH4508419.66    1 AC093615, AL645728
S/G/Y/R/B/O NT_004350AL64572810041131RH27214111.42    1 AC093615, AL645728
S/G/Y/R/B/O NT_004350AL64572810048591RH70327115.89    1AL713970, AC093615, AL645728, AL713970
S/G/Y/R/B/O NT_004350AL64572810049081RH36904113.15    1AL713970, AC093615, AL645728, AL713970
S/G/Y/R/B/O NT_004350AL64572810049821RH10603115.89    1AL713970, AC093615, AL645728, AL713970
S/G/Y/R/B/O NT_004350AL64572810255351RH64278114.16  112.101AL713970, AC093615, AL645728, AL713970
S/G/Y/R/B/O NT_004350AL64572821408461RH65507115.89    1 AC093615, AL645728
S/G/Y/R/B/O NT_004350AL69143210324151RH4980219.76  19.402AL031282, AL031282, AL691432, AL691432
S/G/Y/R/B/O NT_004350AL69143210453671RH10348110.80    2AL031282, AL031282, AL691432, AL691432
S/G/Y/R/B/O NT_004350AL69143210453991RH49860115.89  113.802AL031282, AL031282, AL691432, AL691432
S/G/Y/R/B/O NT_004350AL69143210455251RH12898115.89    2AL031282, AL031282, AL691432, AL691432
S/G/Y/R/B/O NT_004350AL69143210459511RH47738115.07    2AL031282, AL031282, AL691432, AL691432
S/G/Y/R/B/O NT_004350AL69143210481571RH48025112.75    2AL031282, AL031282, AL691432, AL691432
S/G/Y/R/B/O NT_004350AL69143210485931RH41976115.89    2AL031282, AL031282, AL691432, AL691432
S/G/Y/R/B/O NT_004350AL69143210808941RH74860113.36    1AL713970, AL691432, AL713970
S/G/Y/R/B/O NT_004350AL71397010931341RH4776416.36    1AL691432, AL691432, AL713970
S/G/Y/R/B/O NT_004350AL71397020928111RH70284115.07    1AL691432, AL691432, AL713970
S/G/Y/R/B/O NT_004350AL03128211105703RH13866  150.00  2 AL031282, AL031282, AL355675
S/G/Y/R/B/O NT_004350AL03128211105773RH104480115.89    2 AL031282, AL031282, AL355675
S/G/Y/R/B/O NT_004350AL03128211105953RH4182619.97    2 AL031282, AL031282, AL355675
S/G/Y/R/B/O NT_004350AL03128211106123RH1063914.62    2 AL031282, AL031282, AL355675
S/G/Y/R/B/O NT_004350AL03128211143763RH25018115.89    1 AL031282
S/G/Y/R/B/O NT_004350AL03128211144373RH69193115.89    1 AF080694, AL031282
S/G/Y/R/B/O NT_004350AL03128211257833RH4980219.76  19.402AL691432, AL691432, AL031282, AL691432, AL691432
S/G/Y/R/B/O NT_004350AL03128211393343RH10348110.80    2AL691432, AL691432, AL031282, AL691432, AL691432
S/G/Y/R/B/O NT_004350AL03128211393663RH49860115.89  113.802AL691432, AL691432, AL031282, AL691432, AL691432
S/G/Y/R/B/O NT_004350AL03128211394923RH12898115.89    2AL691432, AL691432, AL031282, AL691432, AL691432
S/G/Y/R/B/O NT_004350AL03128211399183RH47738115.07    2AL691432, AL691432, AL031282, AL691432, AL691432
S/G/Y/R/B/O NT_004350AL03128211421453RH48025112.75    2AL691432, AL691432, AL031282, AL691432, AL691432
S/G/Y/R/B/O NT_004350AL03128211425813RH41976115.89    2AL691432, AL691432, AL031282, AL691432, AL691432


  NT_004350 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004350AL03128211631803RH13866  150.00  2 AL031282, AL031282, AL355675
S/G/Y/R/B/O NT_004350AL03128211631873RH104480115.89    2 AL031282, AL031282, AL355675
S/G/Y/R/B/O NT_004350AL03128211632053RH4182619.97    2 AL031282, AL031282, AL355675
S/G/Y/R/B/O NT_004350AL03128211632223RH1063914.62    2 AL031282, AL031282, AL355675
S/G/Y/R/B/O NT_004350AL03128211644683RH48431115.89    1 AL031282, AL355675
S/G/Y/R/B/O NT_004350AL03128211700803RH45111115.89    1AL691432, AL031282, AL691432
S/G/Y/R/B/O NT_004350AL03128211952113RH50065115.07  113.801AL109917, AL031282, AL109917, AL355675
S/G/Y/R/B/O NT_004350AL03128211972403RH11582115.07    1AL109917, AL031282, AL109917
S/G/Y/R/B/O NT_004350AL03128211976753RH64187114.16    1AL109917, AL031282, AL109917, AL355675
S/G/Y/R/B/O NT_004350AL03128211977593RH11807115.89    1AL109917, AL031282, AL109917, AL355675
S/G/Y/R/B/O NT_004350AL03128212076363RH65426115.89    1AL109917, AL031282, AL109917, AL355675
S/G/Y/R/B/O NT_004350AL10991712107741          
S/G/Y/R/B/O NT_004350AL39184513735011          
S/G/Y/R/B/O NT_004350AL64570315144612RH49726112.85  112.601AC068198, AC068198, AL645703
S/G/Y/R/B/O NT_004350AL64570315758882RH64431115.0710.00112.201AC068198, AL590822, AC068198, AL590822, AL645703
S/G/Y/R/B/O NT_004350AC06819815957571RH11740115.07    1AL590822, AL645703, AC068198, AL590822, AL645703
S/G/Y/R/B/O NT_004350AC06819815971561RH49991115.89  112.101AL590822, AL645703, AC068198, AL590822, AL645703
S/G/Y/R/B/O NT_004350AC06819816003641RH98469115.89    1AL590822, AC068198, AL590822
S/G/Y/R/B/O NT_004350AC06819816044301RH103396115.89    1AL590822, AC068198, AL590822
S/G/Y/R/B/O NT_004350AL59082216096051RH50661115.07  113.801AC068198, AC068198, AL590822
S/G/Y/R/B/O NT_004350AL59082216193741RH13378114.16112.00  1 AL590822
S/G/Y/R/B/O NT_004350AL59082217410091RH14633  168.00  2AC025624, AC025624, AC025802, AC092934, AC025624, AC025624, AC025802, AC092934, AL590822
S/G/Y/R/B/O NT_004350AL59082217704011RH46562114.16    1 AL590822
S/G/Y/R/B/O NT_004350AC09293416691331RH14633  168.00  2AC025624, AC025624, AC025802, AL590822, AC025624, AC025624, AC025802, AC092934, AL590822
S/G/Y/R/B/O NT_004350AC02562416757671          
S/G/Y/R/B/O NT_004350AC02580216761901          
S/G/Y/R/B/O NT_004350AL58973917798373          
S/G/Y/R/B/O NT_004350AL51347718103803RH16553115.89    1AC025624, AC025802, AC092934, AC025624, AC025802, AC092934, AL513477
S/G/Y/R/B/O NT_004350AL51347718239123RH47961115.89    1AC025624, AC025802, AC092934, AC025624, AC025802, AC092934, AL513477
S/G/Y/R/B/O NT_004350AL51347718386913RH48602113.05    1AC025624, AC025802, AC092934, AC025624, AC025802, AC092934, AL513477
S/G/Y/R/B/O NT_004350AL51347718646763RH75648111.01    1 AL513477
S/G/Y/R/B/O NT_004350AL51347718648653RH12261115.89    1 AL513477
S/G/Y/R/B/O NT_004350AL51347718657293RH64277115.07  110.301 AL513477
S/G/Y/R/B/O NT_004350AL51347718663083RH68782115.89    1 AL513477
S/G/Y/R/B/O NT_004350AL51353119076853          
S/G/Y/R/B/O NT_004350AL13924619694133RH4687316.26    1 AL139246
S/G/Y/R/B/O NT_004350AL13924620111433RH68845115.89    2 AL139246, AL139246
S/G/Y/R/B/O NT_004350AL13924620187363RH91703113.05    1 AL139246
S/G/Y/R/B/O NT_004350AL13924620188003RH46876111.32    1 AL139246
S/G/Y/R/B/O NT_004350AL13924620190303RH7591310.58    1 AL139246
S/G/Y/R/B/O NT_004350AL13924620375193RH68845115.89    2 AL139246, AL139246
S/G/Y/R/B/O NT_004350AL13924620520593RH17113115.89    1 AL139246
S/G/Y/R/B/O NT_004350AL58974620624173          
S/G/Y/R/B/O NT_004350 - RH10252516.26    0AC026283, AL139287, AC026283, AL139287
S/G/Y/R/B/O NT_004350 - RH103110115.89    1AL645608, AL645608
S/G/Y/R/B/O NT_004350 - RH104543115.07    0  
S/G/Y/R/B/O NT_004350 - RH10455210.58    0  
S/G/Y/R/B/O NT_004350 - RH104557112.95    0  
S/G/Y/R/B/O NT_004350 - RH104569115.89    0  
S/G/Y/R/B/O NT_004350 - RH11651114.16    0  


  NT_004350 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004350 - RH36498111.01    1AC079860, AF276983, AL645608, AC079860, AF276983, AL645608
S/G/Y/R/B/O NT_004350 - RH36625111.11    1AC079860, AL390719, AL645608, AC079860, AL390719, AL645608
S/G/Y/R/B/O NT_004350 - RH4446812.39    1Z98884, AL359881, AL365441, Z98884
S/G/Y/R/B/O NT_004350 - RH47878115.89    1AC079860, AL390719, AL645608, AC079860, AL390719, AL645608
S/G/Y/R/B/O NT_004350 - RH49928111.01    1AL645608, AL645608
S/G/Y/R/B/O NT_004350 - RH6440514.18    1AC025225, AL034417, AL672201, AC025225, AL034417, AL512402, AL672201
S/G/Y/R/B/O NT_004350 - RH50454110.70  18.600AL691432, AL713970, AL691432, AL713970
S/G/Y/R/B/O NT_004350 - RH6433210.69    1AL031847, AL031847, AL356496
S/G/Y/R/B/O NT_004350 - RH66048112.95    0  
S/G/Y/R/B/O NT_004350 - RH67832111.01    1AC079860, AL390719, AL645608, AC079860, AL390719, AL645608
S/G/Y/R/B/O NT_004350 - RH67944115.89    1 AF134583, AL359496, NC_001807
S/G/Y/R/B/O NT_004350 - RH75372113.05    0  
S/G/Y/R/B/O NT_004350 - RH7582119.45    1AL512413, AL359826, AL512413
S/G/Y/R/B/O NT_004350 - RH7649919.35    1AL365330, AL691523, AL365330, AL390734, AL691523
S/G/Y/R/B/O NT_004350 - RH76697111.42    1AF276983, AL669831, AF276983, AL669831
S/G/Y/R/B/O NT_004350 - RH7814419.66    1AL691523, AL691523
S/G/Y/R/B/O NT_004350 - RH91200115.89    0  
S/G/Y/R/B/O NT_004350 - RH9168512.39    1AL031847, AL031847, AL356496
S/G/Y/R/B/O NT_004350 - RH98483115.89    0