Chromosome 1 - RH Maps - Single Contig

Chromosome 1 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_032954	NT_004350	NT_022058	NT_004321	NT_004547	NT_021917	NT_028054	NT_032970
NT_032967	NT_021937	NT_004488	NT_022041	NT_004873	NT_030584	NT_004572	NT_029218
NT_004610	NT_032979	NT_004391	NT_030571	NT_004782	NT_028053	NT_004538	NT_004511
NT_004852	NT_032963	NT_032971	NT_032972	NT_031724	NT_004386	NT_032978	NT_032977
NT_004424	NT_032976	NT_032965	NT_032973	NT_031689	NT_029223	NT_004641	NT_029865
NT_031737	NT_004636	NT_032948	NT_004464	NT_032953	NT_004483	NT_004302	NT_032960
NT_032956	NT_032974	NT_004902	NT_026943	NT_029231	NT_004658	NT_004686	NT_021979
NT_030565	NT_028050	NT_004308	NT_004623	NT_030567	NT_032957	NT_021977	NT_029860
NT_019273	NT_031697	NT_004754	NT_032961	NT_032975	NT_022052	NT_022071	NT_004434
NT_032962	NT_021907	NT_004441	NT_030577	NT_004858	NT_019291	NT_031708	NT_029226
NT_026945	NT_004982	NT_032952	NT_004668	NT_029874	NT_004487	NT_032958	NT_004599
NT_031716	NT_004671	NT_021909	NT_004416	NT_029862	NT_021905	NT_032947	NT_021877
NT_004612	NT_031718	NT_032950	NT_004525	NT_032955	NT_029863	NT_032951	NT_021953
NT_004861	NT_031696	NT_004908	NT_004559	NT_031728	NT_021973	NT_004753	NT_004433
NT_030561	NT_004836	NT_031685	NT_004771	NT_004734	NT_031700	NT_031719	NT_004536
NT_032964	NT_031732	NT_032966	NT_031730	NT_029870	NT_032969	NT_032968

NT_004483

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_004483	AL390880	73475887	1	RH64782	1	211.93					1		AL390880
S/G/Y/R/B/O	NT_004483	AC096948	73541324	3	RH48701	1	192.17					1	AL390880,	AC096948, AL390880
S/G/Y/R/B/O	NT_004483	AC096948	73541560	3	RH64572	1	209.08					1	AL390880,	AC096948, AL390880
S/G/Y/R/B/O	NT_004483	AC096948	73554877	3	RH75405	1	229.60					1	AC103591,	AC096948, AC103591
S/G/Y/R/B/O	NT_004483	AC096948	73555370	3	RH102513	1	192.48					1	AC103591,	AC096948, AC103591
S/G/Y/R/B/O	NT_004483	AC096948	73556001	3	RH64560	1	193.94					1	AC103591,	AC096948, AC103591
S/G/Y/R/B/O	NT_004483	AC096948	73559167	3	RH64497	1	216.00					1	AC103591,	AC096948, AC103591
S/G/Y/R/B/O	NT_004483	AC096948	73564328	3	RH69627	1	209.19					1	AC103591,	AC096948, AC103591
S/G/Y/R/B/O	NT_004483	AC096948	73569855	3	RH64670	1	193.94					1	AC103591,	AC096948, AC103591
S/G/Y/R/B/O	NT_004483	AC103591	73635574	3	RH66218	1	193.67					1	AC093118,	AC025209, AC093118, AC103591
S/G/Y/R/B/O	NT_004483	AC093118	73747542	3	RH48475	1	229.97					1		AC093118, AL139217
S/G/Y/R/B/O	NT_004483	AL136459	73761379	3
S/G/Y/R/B/O	NT_004483	AC096531	73815993	3	RH50557	1	218.01			1	220.90	1		AC096531, AL139217
S/G/Y/R/B/O	NT_004483	AL158841	73951503	3
S/G/Y/R/B/O	NT_004483	AL136324	74130355	3	RH42629	1	212.13	1	3853.00			1		AL136324
S/G/Y/R/B/O	NT_004483	AL136324	74148633	3	RH8307			1	3853.00			1	AL672168,	AL136324, AL354946, AL672168
S/G/Y/R/B/O	NT_004483	AL136324	74149339	3	RH17639	1	210.20					1	AL672168,	AL136324, AL354946, AL672168
S/G/Y/R/B/O	NT_004483	AL672168	74180713	1
S/G/Y/R/B/O	NT_004483	AC104837	74254050	3	RH18393	1	210.02					1	AL672168,	AC104837, AL354946, AL672168
S/G/Y/R/B/O	NT_004483	AC104837	74254078	3	RH64807	1	191.64					1	AL672168,	AC104837, AL354946, AL672168
S/G/Y/R/B/O	NT_004483	AC104837	74254078	3	RH68243	1	209.61					1	AL672168,	AC104837, AL354946, AL672168
S/G/Y/R/B/O	NT_004483	AC104837	74256990	3	RH48344	1	192.07					1	AL672168,	AC104837, AL672168
S/G/Y/R/B/O	NT_004483	AC104837	74257704	3	RH15819	1	192.38					1	AL672168,	AC104837, AL672168
S/G/Y/R/B/O	NT_004483	AC104837	74275537	3	RH69519	1	210.20					1	AL672168,	AC104837, AL354946, AL672168
S/G/Y/R/B/O	NT_004483	AC104837	74275640	3	RH68236	1	209.61					1	AL672168,	AC104837, AL354946, AL672168
S/G/Y/R/B/O	NT_004483	AC104837	74361675	3	RH69374	1	210.12					1	AC008372,	AC008372
S/G/Y/R/B/O	NT_004483	AC099674	74502439	3	RH70233	1	210.20					1	AC024326,	AC024326, AC099674
S/G/Y/R/B/O	NT_004483	AC099674	74502674	3	RH103250	1	209.08					1	AC024326,	AC024326, AC099674
S/G/Y/R/B/O	NT_004483	AC099674	74503481	3	RH103500	1	191.96					1	AC024326,	AC024326, AC099674
S/G/Y/R/B/O	NT_004483	AL596269	74509387	3
S/G/Y/R/B/O	NT_004483	AC098651	74608814	3
S/G/Y/R/B/O	NT_004483	AC093430	74679915	1
S/G/Y/R/B/O	NT_004483	AC024013	74708423	1
S/G/Y/R/B/O	NT_004483	AL122000	74820653	3	RH49267	1	212.13					1		AL122000
S/G/Y/R/B/O	NT_004483	AL353651	74880034	3
S/G/Y/R/B/O	NT_004483	AL606527	75115761	3	RH42587	1	215.90			1	220.40	1		AL606527
S/G/Y/R/B/O	NT_004483	AL606527	75115761	3	RH418			1	3897.00			1		AL606527
S/G/Y/R/B/O	NT_004483	AL627106	75150039	3
S/G/Y/R/B/O	NT_004483	AL358533	75189283	3
S/G/Y/R/B/O	NT_004483	AL591173	75290673	3
S/G/Y/R/B/O	NT_004483	AL360080	75366943	3
S/G/Y/R/B/O	NT_004483	AC096532	75567118	1
S/G/Y/R/B/O	NT_004483	AC012528	75590589	1
S/G/Y/R/B/O	NT_004483	AC103592	76594786	1	RH66413	1	192.38					1	AC099769,	AC098655, AC099769, AC103592
S/G/Y/R/B/O	NT_004483	AC099769	75684915	1	RH27487	1	192.48					1	AC103592,	AC099769, AC103592, AL139155
S/G/Y/R/B/O	NT_004483	AC099769	75684962	1	RH64528	1	192.27					1	AC103592,	AC099769, AC103592, AL139155
S/G/Y/R/B/O	NT_004483	AC099672	75700080	1
S/G/Y/R/B/O	NT_004483	AC012109	75705913	1
S/G/Y/R/B/O	NT_004483	AC105279	75720147	3
S/G/Y/R/B/O	NT_004483	AC104458	75829508	3	GCT15A01					1	219.20	1	AC012109,	AC012109, AC026066, AC104458

NT_004483 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_004483	AC104458	75834192	3	RH48855	1	205.30					1	AC012109, AC099672,	AC012109, AC026066, AC099672, AC104458, AL358775
S/G/Y/R/B/O	NT_004483	AC099060	75943368	1
S/G/Y/R/B/O	NT_004483	AC116315	75987900	1
S/G/Y/R/B/O	NT_004483	AC114487	76123151	1	RH78868	1	193.94					1		AC114487
S/G/Y/R/B/O	NT_004483	AC114487	76138755	1	RH64770	1	207.51	1	3806.00			1	AL451087,	AC114487, AL451087
S/G/Y/R/B/O	NT_004483	AC114487	76138840	1	RH64788	1	191.64					1	AL451087,	AC114487, AL451087
S/G/Y/R/B/O	NT_004483	AL451087	76229887	1	RH67294	1	209.19					1		AL451087
S/G/Y/R/B/O	NT_004483	AL451087	76230573	1	RH91759	1	209.08					1		AL451087
S/G/Y/R/B/O	NT_004483	AC026073	76249691	1
S/G/Y/R/B/O	NT_004483	AC093575	76265075	3	RH25475	1	192.38					1	AL451087,	AC093575, AL451087
S/G/Y/R/B/O	NT_004483	AC093575	76277722	3	RH27174	1	191.36					1	AL451087,	AC093575, AL451087
S/G/Y/R/B/O	NT_004483	AC093575	76278463	3	RH16278	1	209.08					1	AL451087,	AC093575, AL451087
S/G/Y/R/B/O	NT_004483	AC093575	76278498	3	RH67632	1	209.08					1	AL451087,	AC093575, AL451087
S/G/Y/R/B/O	NT_004483	AC093575	76281129	3	RH103803	1	192.27					1	AL451087,	AC093575, AL451087
S/G/Y/R/B/O	NT_004483	AC093575	76281464	3	RH64356	1	229.87	1	3782.00	1	220.30	1	AL451087,	AL451087
S/G/Y/R/B/O	NT_004483	AC093575	76305407	3	RH10229	1	208.98					1		AC093575
S/G/Y/R/B/O	NT_004483	AC093575	76306758	3	RH25487	1	191.86					1		AC093575
S/G/Y/R/B/O	NT_004483	AC095030	76448841	3	WI-4060					1	222.50	1	AC019136, AC026073,	AC019136, AC026073, AC095030
S/G/Y/R/B/O	NT_004483	AC095030	76478807	3	RH64407	1	192.38			1	217.30	1	AC019136,	AC019136, AC095030, AL500523
S/G/Y/R/B/O	NT_004483	AC095030	76516807	3	RH1010			1	3765.00			1	AC019136,	AC019136, AC095030, AL500523
S/G/Y/R/B/O	NT_004483	AC093433	76523262	1	WI-3101					1	219.20	1	AC019136,	AC019136, AC093433, AL500523
S/G/Y/R/B/O	NT_004483	AC093433	77192220	1	RH15116	1	202.15					1	AC073027, AC113935,	AC073027, AC093433, AC113935
S/G/Y/R/B/O	NT_004483	AC019136	76578869	1
S/G/Y/R/B/O	NT_004483	AC026932	76621479	1
S/G/Y/R/B/O	NT_004483	AC069315	76736569	1
S/G/Y/R/B/O	NT_004483	AC024326	76861525	1
S/G/Y/R/B/O	NT_004483	AC096951	76899073	3	RH45317	1	207.51					1	AC069315,	AC069315, AC096951, AL354946
S/G/Y/R/B/O	NT_004483	AC096951	76957346	3	AFM312VG5					1	217.00	1	AL035409,	AC096951, AL035409
S/G/Y/R/B/O	NT_004483	AL035409	77029229	3	RH18325	1	205.09					1	AC026874, AC113935,	AC026874, AC113935, AL035409
S/G/Y/R/B/O	NT_004483	AL035409	77029302	3	RH64660	1	194.48					1	AC026874, AC113935,	AC026874, AC113935, AL035409
S/G/Y/R/B/O	NT_004483	AL035409	77030013	3	RH64634	1	191.86					1	AC026874, AC113935,	AC026874, AC113935, AL035409
S/G/Y/R/B/O	NT_004483	AL035409	77030717	3	RH50052	1	207.51			1	220.30	1	AC026874, AC113935,	AC026874, AC113935, AL035409
S/G/Y/R/B/O	NT_004483	AL035409	77030970	3	RH49728	1	212.53			1	220.40	1	AC026874, AC113935,	AC026874, AC113935, AL035409
S/G/Y/R/B/O	NT_004483	AL035409	77031050	3	RH80218	1	197.22					1	AC026874, AC113935,	AC026874, AC113935, AL035409
S/G/Y/R/B/O	NT_004483	AL035409	77054667	3	RH81087	1	196.09					1	AC026874, AC113935,	AC026874, AC113935, AL035409
S/G/Y/R/B/O	NT_004483	AL035409	77056063	3	RH64649	1	191.86					1	AC026874, AC113935,	AC026874, AC113935, AL035409
S/G/Y/R/B/O	NT_004483	AL035409	77057319	3	RH69705	1	205.09					1	AC026874, AC113935,	AC026874, AC113935, AL035409
S/G/Y/R/B/O	NT_004483	AL035409	77057744	3	RH74899	1	229.56					1	AC026874, AC113935,	AC026874, AC113935, AL035409
S/G/Y/R/B/O	NT_004483	AC026874	77058857	1
S/G/Y/R/B/O	NT_004483	AC113935	77061882	1
S/G/Y/R/B/O	NT_004483	AC073027	77255276	1
S/G/Y/R/B/O	NT_004483		-		RH102630	1	197.22					1	AC015897, AC019284, AC058795,	AC015897, AC019284, AC058795
S/G/Y/R/B/O	NT_004483		-		RH1356			1	3676.00			1	AL358512, AL590559,	AL358512, AL590559
S/G/Y/R/B/O	NT_004483		-		RH104502	1	192.48					1		AC009337
S/G/Y/R/B/O	NT_004483		-		RH31581			1	3676.00			1	AL358512,	AL358512
S/G/Y/R/B/O	NT_004483		-		RH17165	1	205.30					1	AL357314,	AC009337, AL357314, AL592082
S/G/Y/R/B/O	NT_004483		-		RH32296			1	3669.00			1	AL500525,	AL500525
S/G/Y/R/B/O	NT_004483		-		RH17668	1	205.30					1	AL357314,	AL357314, AL359206, AL592082
S/G/Y/R/B/O	NT_004483		-		RH33230			1	3662.00			1	AL391703,	AC046169, AL391703, AL391871
S/G/Y/R/B/O	NT_004483		-		RH26326	1	191.86					0	AL353771,	AC019213, AL353771

NT_004483 (cont)

Links	Contig	Chr Start	STS Marker	GM Chr	GM99 GB4	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_004483	-	RH36291	1	225.42			1	AL157903,	AL157903
S/G/Y/R/B/O	NT_004483	-	RH42481	1	194.80			1	AC093156,	AC093156
S/G/Y/R/B/O	NT_004483	-	RH49235	1	223.90			1	AL157903,	AL157903
S/G/Y/R/B/O	NT_004483	-	RH64249	1	191.86			1	AL096829,	AL096829
S/G/Y/R/B/O	NT_004483	-	RH49744	1	193.62			1	AL357314,	AL357314, AL359206, AL592082
S/G/Y/R/B/O	NT_004483	-	RH64212	1	193.67	1	217.10	0
S/G/Y/R/B/O	NT_004483	-	RH50148	1	192.17	1	220.90	1	AC053498, AC093156,	AC053498, AC093156
S/G/Y/R/B/O	NT_004483	-	RH63936	1	193.67			1	AL357314,	AC009337, AL357314, AL592082
S/G/Y/R/B/O	NT_004483	-	RH66703	1	193.94			1	AC098692, AL354708,	AC098692, AL354708
S/G/Y/R/B/O	NT_004483	-	RH67292	1	197.43			1	AC027384, AC073499, AL357732,	AC027384, AC073499, AL357732
S/G/Y/R/B/O	NT_004483	-	RH67692	1	195.12			1	AC098692, AL354708,	AC098692, AL354708
S/G/Y/R/B/O	NT_004483	-	RH68052	1	197.43			1	AC009418,	AC009418, L31526
S/G/Y/R/B/O	NT_004483	-	RH69010	1	197.22			1	AC009418,	AC009418, L31526
S/G/Y/R/B/O	NT_004483	-	RH70455	1	195.12			1	AC053498, AC093156,	AC053498, AC093156
S/G/Y/R/B/O	NT_004483	-	RH92878	1	191.67			1	AC018404, AC098692, AL354708,	AC018404, AC098692, AL354708