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  Chromosome 1 - RH Maps - Single Contig
 

Chromosome 1 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_032954 NT_004350 NT_022058 NT_004321 NT_004547 NT_021917 NT_028054 NT_032970
NT_032967 NT_021937 NT_004488 NT_022041 NT_004873 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_030571 NT_004782 NT_028053 NT_004538 NT_004511
NT_004852 NT_032963 NT_032971 NT_032972 NT_031724 NT_004386 NT_032978 NT_032977
NT_004424 NT_032976 NT_032965 NT_032973 NT_031689 NT_029223 NT_004641 NT_029865
NT_031737 NT_004636 NT_032948 NT_004464 NT_032953 NT_004483 NT_004302 NT_032960
NT_032956 NT_032974 NT_004902 NT_026943 NT_029231 NT_004658 NT_004686 NT_021979
NT_030565 NT_028050 NT_004308 NT_004623 NT_030567 NT_032957 NT_021977 NT_029860
NT_019273 NT_031697 NT_004754 NT_032961 NT_032975 NT_022052 NT_022071 NT_004434
NT_032962 NT_021907 NT_004441 NT_030577 NT_004858 NT_019291 NT_031708 NT_029226
NT_026945 NT_004982 NT_032952 NT_004668 NT_029874 NT_004487 NT_032958 NT_004599
NT_031716 NT_004671 NT_021909 NT_004416 NT_029862 NT_021905 NT_032947 NT_021877
NT_004612 NT_031718 NT_032950 NT_004525 NT_032955 NT_029863 NT_032951 NT_021953
NT_004861 NT_031696 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433
NT_030561 NT_004836 NT_031685 NT_004771 NT_004734 NT_031700 NT_031719 NT_004536
NT_032964 NT_031732 NT_032966 NT_031730 NT_029870 NT_032969 NT_032968


  NT_004434
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004434AL3569571402121343          
S/G/Y/R/B/O NT_004434AC0271811404268361          
S/G/Y/R/B/O NT_004434AC0847891404785071          
S/G/Y/R/B/O NT_004434AL4510431405101043          
S/G/Y/R/B/O NT_004434AL0497421406014353RH499051536.01    1 AL049742
S/G/Y/R/B/O NT_004434AL0497421406014353SGC44458    1645.001 AL049742
S/G/Y/R/B/O NT_004434AL0497421406119763RH983691536.07    1 AL049742
S/G/Y/R/B/O NT_004434AL3560041406565603          
S/G/Y/R/B/O NT_004434AL3652211428898761RH658651531.77    1AC022965, AC022965, AL365221
S/G/Y/R/B/O NT_004434AL3652211429034011RH183001517.70    2AC022965, AC097313, AL390725, AC022965, AC097313, AL365221, AL390725, AL611965
S/G/Y/R/B/O NT_004434AL3652211429034151RH498321509.73  1611.502AC022965, AC097313, AL390725, AC022965, AC097313, AL365221, AL390725, AL611965
S/G/Y/R/B/O NT_004434AL3652211429043541RH639041532.84  1613.101AC022965, AL390725, AC022965, AL365221, AL390725, AL611965
S/G/Y/R/B/O NT_004434AL3652211429121871RH665021532.84    1AC022965, AL390725, AC022965, AL365221, AL390725, AL611965
S/G/Y/R/B/O NT_004434AL5922841407430063          
S/G/Y/R/B/O NT_004434AL1387961409378413RH33685  15879.00  2 AL162261, AL356581
S/G/Y/R/B/O NT_004434AL1387961409524833RH505001535.4415656.001627.101 AC026900, AC027209, AL138796, AL390296, AL592491
S/G/Y/R/B/O NT_004434AL1387961409915493WI-13414    1509.001 AC026900, AC027209, AL138796, AL390296, AL592491
S/G/Y/R/B/O NT_004434AL1387961409915493RH74590  15646.00  1 AC027209
S/G/Y/R/B/O NT_004434AL1387961409992393RH645641535.89    1 AC026900, AL138796
S/G/Y/R/B/O NT_004434AL1387961410006343RH183581537.26    2AL139152, AC026900, AL138796, AL139152, AL592491
S/G/Y/R/B/O NT_004434AL1387961410036703RH925351535.89    2AL139152, AL590452, AC026900, AL138796, AL139152, AL590452, AL592491
S/G/Y/R/B/O NT_004434AL5904521410369823RH646831533.74    1 AL390296, AL590452, AL592491
S/G/Y/R/B/O NT_004434AL5904521411247053RH1284  15635.00  1 AC016372, AL590452
S/G/Y/R/B/O NT_004434AL5904521411314593WI-6908    1505.801 AC016372, AC018405, AL390735, AL590452
S/G/Y/R/B/O NT_004434AL1387911411600043          
S/G/Y/R/B/O NT_004434AL3597581412361213RH694821536.12    1 AL359758
S/G/Y/R/B/O NT_004434AL3597581412362343RH446221535.89    1 AL359758
S/G/Y/R/B/O NT_004434AL0497151412735773          
S/G/Y/R/B/O NT_004434AL5923071425362361RH33685  15879.00  2 AL162261, AL356581
S/G/Y/R/B/O NT_004434AL3591761414291671          
S/G/Y/R/B/O NT_004434AL1391521415928343RH183581537.26    2AL138796, AC026900, AL138796, AL139152, AL592491
S/G/Y/R/B/O NT_004434AL1391521415957983RH925351535.89    2AL138796, AL590452, AC026900, AL138796, AL139152, AL590452, AL592491
S/G/Y/R/B/O NT_004434AL5961771416369943RH708811535.33    2AC013470, AC005541, AC013470, AL596177, X91337
S/G/Y/R/B/O NT_004434AL3563781417098953RH711061540.36    1 AC015706, AL356378
S/G/Y/R/B/O NT_004434AL3563781417098953RH14186  12345.00  1 AC015706, AL356378
S/G/Y/R/B/O NT_004434AL3563781417099373RH260331540.36    1 AC015706, AL356378
S/G/Y/R/B/O NT_004434AL3563781417112703RH646811537.59    1 AC015706, AL356378
S/G/Y/R/B/O NT_004434AL3563781417142023RH664991536.80    1 AC015706, AL356378
S/G/Y/R/B/O NT_004434AL3563781417230173RH508541538.16  1628.901 AL356378
S/G/Y/R/B/O NT_004434AL3563781417390933RH1215  12345.00  1 AC015706, AL356378
S/G/Y/R/B/O NT_004434AL3563781417392223RH37798  12345.00  1 AC015706, AL356378
S/G/Y/R/B/O NT_004434AL3563781417402363RH1041591540.36    1 AC015706, AL356378
S/G/Y/R/B/O NT_004434AL3563781417410473WI-7969    1621.701 AC015706, AL356378
S/G/Y/R/B/O NT_004434AL3563781417410473RH506251538.95    1 AC015706, AL356378
S/G/Y/R/B/O NT_004434AL3563781417410473RH14117  12345.00  1 AC015706, AL356378
S/G/Y/R/B/O NT_004434AL3563781417411323RH1201  12345.00  1 AC015706, AL356378
S/G/Y/R/B/O NT_004434AL3563781417554423RH806711537.59    1 AC015706, AL356378
S/G/Y/R/B/O NT_004434AL3563781417579173RH8783  21652.00  2AF129075, AF129075, AL163249, D42052
S/G/Y/R/B/O NT_004434AL3563781417644783RH479201536.80    1 AC015706, AL356378
S/G/Y/R/B/O NT_004434AL3563781417801583RH642621540.36  1628.101 AC015706, AL356378


  NT_004434 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004434AL3563781418363513WI-11526    1625.701 AL356378
S/G/Y/R/B/O NT_004434AL3563781418363513RH639181538.78    1 AL356378
S/G/Y/R/B/O NT_004434AL3563781418365303RH637991535.66  1627.301 AL356378
S/G/Y/R/B/O NT_004434AL3919041418881813          
S/G/Y/R/B/O NT_004434AL5906671419544033          
S/G/Y/R/B/O NT_004434AL3592071421847073RH796421536.01    1 AL359207
S/G/Y/R/B/O NT_004434AL3592071422024543RH454581537.26    1 AL359207
S/G/Y/R/B/O NT_004434AL3592071422145613RH938171535.33    1 AL359207
S/G/Y/R/B/O NT_004434AL3652601423054793WI-497    1621.701 AL365260
S/G/Y/R/B/O NT_004434AL3652601423115503RH638841537.59    1 AL365260
S/G/Y/R/B/O NT_004434AL3652601423115503WI-8386    1628.701 AL365260
S/G/Y/R/B/O NT_004434AL3652601423124373RH694911536.80    1 AL365260
S/G/Y/R/B/O NT_004434AL3652601423135283RH711901536.74    1AC025692, AC025692, AL365260
S/G/Y/R/B/O NT_004434AL4455911424669123RH941601536.12    1AC025692, AC025692, AL445591
S/G/Y/R/B/O NT_004434AC0256921424892081          
S/G/Y/R/B/O NT_004434AC0229651425007061RH660271532.84    1AL365221, AC022965, AL365221, AL611965
S/G/Y/R/B/O NT_004434AC0229651428551561RH788351518.96    1AL390725, AC022965, AL390725, AL611965
S/G/Y/R/B/O NT_004434AL3555051425510453          
S/G/Y/R/B/O NT_004434AL1388421425766043RH175101509.83    1 AL138842, AL359093
S/G/Y/R/B/O NT_004434AL1388421425766863RH642691530.81  1608.401 AL138842, AL359093
S/G/Y/R/B/O NT_004434AL1388421425767473RH108071509.83    1 AL138842, AL359093
S/G/Y/R/B/O NT_004434AL1388421425768253RH167621509.83    1 AL138842, AL359093
S/G/Y/R/B/O NT_004434AL1388421425982633RH1045081531.99    1AL160282, AB051901, AL138842, AL160282, AL359093
S/G/Y/R/B/O NT_004434AL1602821426008462RH128781509.83    1 AB051901, AL359093
S/G/Y/R/B/O NT_004434AL1602821426008862RH645811532.55    1 AB051901, AL160282, AL359093
S/G/Y/R/B/O NT_004434AL1602821426008972RH499641532.55  1615.601 AB051901, AL160282, AL359093
S/G/Y/R/B/O NT_004434AL1602821426013292RH701401532.55    1 AB051901, AL160282, AL359093
S/G/Y/R/B/O NT_004434AL1602821426014692RH249461532.55    1 AB051901, AL160282, AL359093
S/G/Y/R/B/O NT_004434AL1602821426017592RH507721515.33  1611.001 AB051901, AL160282, AL359093
S/G/Y/R/B/O NT_004434AL1602821426018032RH639521530.18  1615.501 AB051901, AL160282, AL359093
S/G/Y/R/B/O NT_004434AL1602821426157022RH496571532.55  1615.501 AL160282
S/G/Y/R/B/O NT_004434AL1602821426157752RH644391531.99  1611.701 AL160282
S/G/Y/R/B/O NT_004434AL1602821426347832RH711341511.7715882.001608.701 AL160282
S/G/Y/R/B/O NT_004434AL1602821426533672RH1026631519.07    1 AL160282
S/G/Y/R/B/O NT_004434AL1602821426706322RH800391510.30    2AL122057, AL132778, AF403012, AF403014, AL122057, AL132778, AL160282
S/G/Y/R/B/O NT_004434AL1602821426719022RH265951519.38    1 AF403014, AL160282
S/G/Y/R/B/O NT_004434AL1602821426726532RH508281515.77  1609.201 AF403014, AL160282
S/G/Y/R/B/O NT_004434AL1602821426726542RH474981512.23    1 AF403014, AL160282
S/G/Y/R/B/O NT_004434AL1602821426728672WI-12966    1601.701 AF403014, AL160282
S/G/Y/R/B/O NT_004434AL1602821426729032RH501361516.19  1609.601 AF403014, AL160282
S/G/Y/R/B/O NT_004434AL1602821426828532RH507581516.19  1609.601 AL160282
S/G/Y/R/B/O NT_004434AL1602821426913882RH493211523.99    1 AF172723, AL160282
S/G/Y/R/B/O NT_004434AL1602821427029742RH684251512.23    1 AL160282
S/G/Y/R/B/O NT_004434AL1602821427255402RH10332313155.33    3AC090857, AL135901, AP002757, AC019137, AC090857, AL135901, AP002757
S/G/Y/R/B/O NT_004434AL1602821427455642RH32291  15875.00  1 AL160282
S/G/Y/R/B/O NT_004434AL1602821427456992RH505551517.79  1607.101 AL160282
S/G/Y/R/B/O NT_004434AL1602821427457352RH1033471520.74    1 AL160282
S/G/Y/R/B/O NT_004434AL1602821427458322RH798141510.20    1 AL160282
S/G/Y/R/B/O NT_004434AL1602821427458832RH681191519.07    1 AL160282
S/G/Y/R/B/O NT_004434AL1602821427564482RH646841512.23    1 AL160282


  NT_004434 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004434AL1602821427899682RH423251512.23  1603.001AL390725, AL160282, AL390725, AL611965
S/G/Y/R/B/O NT_004434AL1602821427899682RH407  15863.00  1AL390725, AL160282, AL390725, AL611965
S/G/Y/R/B/O NT_004434AL3907251428206411RH1041111514.25    1AC022965, AC022965, AL390725, AL611965
S/G/Y/R/B/O NT_004434AL3907251428464311RH654081519.27    1AC022965, AC022965, AL390725, AL611965
S/G/Y/R/B/O NT_004434AL3907251428475471RH497171512.23  1609.601AC022965, AC022965, AL390725, AL611965
S/G/Y/R/B/O NT_004434AL3907251428494011RH694781512.23    1AC022965, AC022965, AL390725, AL611965
S/G/Y/R/B/O NT_004434AL3907251428617501RH475561521.87    1AC022965, AC022965, AL390725, AL611965
S/G/Y/R/B/O NT_004434 - RH1020941535.33    0AL359207, AL359207
S/G/Y/R/B/O NT_004434 - RH1289  15645.00  2AL161736, AL358175, AL161736, AL358175
S/G/Y/R/B/O NT_004434 - SGC32297    1517.000AL591493, AL591493
S/G/Y/R/B/O NT_004434 - RH128551512.23    0  
S/G/Y/R/B/O NT_004434 - RH32618  15646.00  1 AL357493
S/G/Y/R/B/O NT_004434 - WI-8997    1570.401AL591493, AL591493, M91645, M91646
S/G/Y/R/B/O NT_004434 - RH267951536.58    1AC018785, AL591493, AC018785, AL591493
S/G/Y/R/B/O NT_004434 - SGC30600    1588.101AL078463, AL078463, AL357493, AL357493
S/G/Y/R/B/O NT_004434 - RH359051536.12    1AC024468, AL592207, AL691471, AC024468, AL355866, AL592207, AL683889, AL691471
S/G/Y/R/B/O NT_004434 - RH359781512.23    0AC022965, AL390725, AC022965, AL390725, AL611965
S/G/Y/R/B/O NT_004434 - RH489861537.59    1AL355388, AL355388
S/G/Y/R/B/O NT_004434 - RH498581535.89  1608.601AC024468, AL592207, AL691471, AC024468, AL355866, AL592207, AL683889, AL691471
S/G/Y/R/B/O NT_004434 - RH643771536.46  1618.701AC024468, AL592207, AC024468, AL592207
S/G/Y/R/B/O NT_004434 - RH664971536.52    1AC018785, AL591493, AC018785, AL591493
S/G/Y/R/B/O NT_004434 - WI-8440    1627.501AL358073, AC022243, AL358073
S/G/Y/R/B/O NT_004434 - RH981741532.55    0