Chromosome 1 - RH Maps - Single Contig

Chromosome 1 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_032954	NT_004350	NT_022058	NT_004321	NT_004547	NT_021917	NT_028054	NT_032970
NT_032967	NT_021937	NT_004488	NT_022041	NT_004873	NT_030584	NT_004572	NT_029218
NT_004610	NT_032979	NT_004391	NT_030571	NT_004782	NT_028053	NT_004538	NT_004511
NT_004852	NT_032963	NT_032971	NT_032972	NT_031724	NT_004386	NT_032978	NT_032977
NT_004424	NT_032976	NT_032965	NT_032973	NT_031689	NT_029223	NT_004641	NT_029865
NT_031737	NT_004636	NT_032948	NT_004464	NT_032953	NT_004483	NT_004302	NT_032960
NT_032956	NT_032974	NT_004902	NT_026943	NT_029231	NT_004658	NT_004686	NT_021979
NT_030565	NT_028050	NT_004308	NT_004623	NT_030567	NT_032957	NT_021977	NT_029860
NT_019273	NT_031697	NT_004754	NT_032961	NT_032975	NT_022052	NT_022071	NT_004434
NT_032962	NT_021907	NT_004441	NT_030577	NT_004858	NT_019291	NT_031708	NT_029226
NT_026945	NT_004982	NT_032952	NT_004668	NT_029874	NT_004487	NT_032958	NT_004599
NT_031716	NT_004671	NT_021909	NT_004416	NT_029862	NT_021905	NT_032947	NT_021877
NT_004612	NT_031718	NT_032950	NT_004525	NT_032955	NT_029863	NT_032951	NT_021953
NT_004861	NT_031696	NT_004908	NT_004559	NT_031728	NT_021973	NT_004753	NT_004433
NT_030561	NT_004836	NT_031685	NT_004771	NT_004734	NT_031700	NT_031719	NT_004536
NT_032964	NT_031732	NT_032966	NT_031730	NT_029870	NT_032969	NT_032968

NT_004391

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_004391	AL139426	23148096	2	RH50379	1	85.31			1	85.60	3	AL031284,	AB035195, AB035196, AL031284, AL139426, AL139426
S/G/Y/R/B/O	NT_004391	AL139426	23148096	2	RH46095	1	85.42					3	AL031284,	AB035195, AB035196, AL031284, AL139426, AL139426
S/G/Y/R/B/O	NT_004391	AL139426	23151523	2	RH64445	1	85.42	1	1473.00	1	84.20	3	AL031284,	AB035195, AB035196, AL031284, AL139426, AL139426
S/G/Y/R/B/O	NT_004391	AL139426	23173409	2	RH71035	1	85.62					2	AL031284,	AL031284, AL139426
S/G/Y/R/B/O	NT_004391	AL139426	23199469	2	RH63909	1	85.31			1	84.20	2	AL031284,	AB035191, AL031284, AL139426
S/G/Y/R/B/O	NT_004391	AL139426	23219330	2	RH50379	1	85.31			1	85.60	3	AL031284,	AB035195, AB035196, AL031284, AL139426, AL139426
S/G/Y/R/B/O	NT_004391	AL139426	23219330	2	RH46095	1	85.42					3	AL031284,	AB035195, AB035196, AL031284, AL139426, AL139426
S/G/Y/R/B/O	NT_004391	AL139426	23222758	2	RH64445	1	85.42	1	1473.00	1	84.20	3	AL031284,	AB035195, AB035196, AL031284, AL139426, AL139426
S/G/Y/R/B/O	NT_004391	AL139426	23231659	2	RH14149			1	1516.00			1		AF458851, AL139426
S/G/Y/R/B/O	NT_004391	AL139426	23231855	2	RH64303	1	85.42					1		AF458851, AL139426
S/G/Y/R/B/O	NT_004391	AL139426	23231855	2	WI-18360					1	85.80	1		AF458851, AL139426
S/G/Y/R/B/O	NT_004391	AL139426	23231911	2	RH25052	1	85.62					1		AF458851, AL139426
S/G/Y/R/B/O	NT_004391	AL139426	23232668	2	RH45980	1	86.44					1		AF458851, AL139426
S/G/Y/R/B/O	NT_004391	AL139426	23233247	2	RH104521	1	85.42					1		AF458851, AL139426
S/G/Y/R/B/O	NT_004391	AL031432	23266906	3	RH75456	1	85.42					1	AL139426,	AL031432, AL139426
S/G/Y/R/B/O	NT_004391	AL031432	23267292	3	RH27201	1	85.45					1	AL139426,	AL031432, AL139426
S/G/Y/R/B/O	NT_004391	AL031432	23278589	3	RH68822	1	82.39					1	AL139426,	AL031432, AL139426
S/G/Y/R/B/O	NT_004391	AL031432	23279262	3	RH70766	1	85.62					1	AL139426,	AL031432, AL139426
S/G/Y/R/B/O	NT_004391	AL031432	23281242	3	RH12483	1	85.31					1	AL139426,	AL031432, AL139426
S/G/Y/R/B/O	NT_004391	AL031432	23300913	3	RH50317	1	85.52			1	85.60	1	AL139426,	AL031432, AL139426
S/G/Y/R/B/O	NT_004391	AL031432	23301285	3	RH68497	1	82.39					1		AL031432
S/G/Y/R/B/O	NT_004391	AL121994	23385067	3
S/G/Y/R/B/O	NT_004391	AC027704	24478410	1	CHLC.GGAA22F10					1	84.20	1		AC027704
S/G/Y/R/B/O	NT_004391	AL591178	23451882	3	RH75142	1	82.39					1		AL591178
S/G/Y/R/B/O	NT_004391	AL590683	23555888	3	RH102903	1	82.80					1		AL590683
S/G/Y/R/B/O	NT_004391	AL358412	23695868	3
S/G/Y/R/B/O	NT_004391	AL138902	23703330	3
S/G/Y/R/B/O	NT_004391	AL031431	23752781	3	RH69529	1	82.90					1		AL031431
S/G/Y/R/B/O	NT_004391	AL031431	23791749	3	RH69363	1	82.39					1		AL031431
S/G/Y/R/B/O	NT_004391	AL031431	23814653	3	RH69442	1	85.62					1		AC093587, AL031431
S/G/Y/R/B/O	NT_004391	AL031431	23815080	3	RH27104	1	82.90					1		AC093587, AL031431
S/G/Y/R/B/O	NT_004391	AL031431	23865458	3	RH64210	1	82.90					1		AC093587, AL031431, AL353145
S/G/Y/R/B/O	NT_004391	AL031431	23865458	3	SGC30617					1	82.60	1		AC093587, AL031431, AL353145
S/G/Y/R/B/O	NT_004391	AL031431	23866845	3	RH70727	1	83.60					1		AC093587, AL031431, AL353145
S/G/Y/R/B/O	NT_004391	AL031431	23867806	3	RH12334	1	82.90					1		AC093587, AL031431, AL353145
S/G/Y/R/B/O	NT_004391	AL031431	23868343	3	RH18352	1	83.60					1		AC093587, AL031431, AL353145
S/G/Y/R/B/O	NT_004391	AL031431	23868347	3	RH50875	1	83.60			1	84.20	1		AC093587, AL031431, AL353145
S/G/Y/R/B/O	NT_004391	AL031431	23868439	3	RH64781	1	83.60					1		AC093587, AL031431, AL353145
S/G/Y/R/B/O	NT_004391	AL031431	23868554	3	RH64750	1	83.60					1		AC093587, AL031431, AL353145
S/G/Y/R/B/O	NT_004391	AL034582	23919233	3	RH49301	1	83.60					1		AL034582
S/G/Y/R/B/O	NT_004391	AL034582	23919233	3	RH30660			1	1346.00			1		AL034582
S/G/Y/R/B/O	NT_004391	AL034582	23936434	3	RH26977	1	83.60					1		AL034582, AL353145
S/G/Y/R/B/O	NT_004391	AL445686	23942448	3
S/G/Y/R/B/O	NT_004391	AL445648	24148009	1	RH48347	1	85.21					1	AL662924,	AL445648, AL662924
S/G/Y/R/B/O	NT_004391	AL662924	24236670	1	RH68926	1	83.60					1		AL662924
S/G/Y/R/B/O	NT_004391	AL662924	24238691	1	RH50104	1	83.60	1	1501.00	1	84.20	1		AL662924
S/G/Y/R/B/O	NT_004391	AL023096	24293431	3	RH50064	1	83.60			1	84.20	1		AL023096, Z38108
S/G/Y/R/B/O	NT_004391	AL023096	24293629	3	RH70984	1	82.39					1		AL023096, Z38108
S/G/Y/R/B/O	NT_004391	AL445471	24354054	3
S/G/Y/R/B/O	NT_004391	AL050344	24440895	3	RH99265	1	85.52					1	AC027704,	AC027704, AL050344

NT_004391 (cont)

Links	Contig	Chr Start	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_004391	-	RH104185	1	85.62					0
S/G/Y/R/B/O	NT_004391	-	RH33023			1	1436.00			1	AC068311, AL031428,	AC068311, AL031428
S/G/Y/R/B/O	NT_004391	-	RH11532	1	85.31					0
S/G/Y/R/B/O	NT_004391	-	RH17541	1	85.11					0	AL590728,	AL590728, M80815
S/G/Y/R/B/O	NT_004391	-	RH63878	1	85.52			1	85.50	0
S/G/Y/R/B/O	NT_004391	-	RH68284	1	85.21					1	AL031727, AP003160,	AL031727, AP003160, D89013
S/G/Y/R/B/O	NT_004391	-	RH68801	1	85.62					0
S/G/Y/R/B/O	NT_004391	-	RH93555	1	83.60					0
S/G/Y/R/B/O	NT_004391	-	RH98397	1	85.31					1	AC068311, AL031428,	AC068311, AL031428