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  Chromosome 1 - RH Maps - Single Contig
 

Chromosome 1 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_032954 NT_004350 NT_022058 NT_004321 NT_004547 NT_021917 NT_028054 NT_032970
NT_032967 NT_021937 NT_004488 NT_022041 NT_004873 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_030571 NT_004782 NT_028053 NT_004538 NT_004511
NT_004852 NT_032963 NT_032971 NT_032972 NT_031724 NT_004386 NT_032978 NT_032977
NT_004424 NT_032976 NT_032965 NT_032973 NT_031689 NT_029223 NT_004641 NT_029865
NT_031737 NT_004636 NT_032948 NT_004464 NT_032953 NT_004483 NT_004302 NT_032960
NT_032956 NT_032974 NT_004902 NT_026943 NT_029231 NT_004658 NT_004686 NT_021979
NT_030565 NT_028050 NT_004308 NT_004623 NT_030567 NT_032957 NT_021977 NT_029860
NT_019273 NT_031697 NT_004754 NT_032961 NT_032975 NT_022052 NT_022071 NT_004434
NT_032962 NT_021907 NT_004441 NT_030577 NT_004858 NT_019291 NT_031708 NT_029226
NT_026945 NT_004982 NT_032952 NT_004668 NT_029874 NT_004487 NT_032958 NT_004599
NT_031716 NT_004671 NT_021909 NT_004416 NT_029862 NT_021905 NT_032947 NT_021877
NT_004612 NT_031718 NT_032950 NT_004525 NT_032955 NT_029863 NT_032951 NT_021953
NT_004861 NT_031696 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433
NT_030561 NT_004836 NT_031685 NT_004771 NT_004734 NT_031700 NT_031719 NT_004536
NT_032964 NT_031732 NT_032966 NT_031730 NT_029870 NT_032969 NT_032968


  NT_026943
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_026943AC026905849522351          
S/G/Y/R/B/O NT_026943AC104455849613201          
S/G/Y/R/B/O NT_026943AL359971850844363          
S/G/Y/R/B/O NT_026943AC099561852428463RH695581243.80    1 AC022771, AC099561, AL139146
S/G/Y/R/B/O NT_026943AC099561853069483RH926411241.58    1 AC099561
S/G/Y/R/B/O NT_026943AL365355853399081          
S/G/Y/R/B/O NT_026943AC019261853565671          
S/G/Y/R/B/O NT_026943AC092807853870823RH1024571241.48    1AL365355, AC092807, AL365355
S/G/Y/R/B/O NT_026943AC092807853873733RH682131243.87    1 AC092807
S/G/Y/R/B/O NT_026943AC092807853883743RH677771243.80    1AL365355, AC092807, AL365355
S/G/Y/R/B/O NT_026943AC092807854055033WI-4820    1243.701AL365355, AC092807, AL365355
S/G/Y/R/B/O NT_026943AC092807854335743RH493631240.96    1 AC092807
S/G/Y/R/B/O NT_026943AC092807854568153RH8017  14161.00  1 AC092807, AF307860
S/G/Y/R/B/O NT_026943AC092807854568153RH647871241.06    1 AC092807, AF307860
S/G/Y/R/B/O NT_026943AL360219855580053RH930341240.96    1 AC098689, AL162260, AL360219
S/G/Y/R/B/O NT_026943AL360219855587373RH2527310478.05    2AL500527, AC098689, AL500527
S/G/Y/R/B/O NT_026943AL360219855841923RH501611240.96  1243.701AC019261, AC019261, AC098689, AL162260, AL360219
S/G/Y/R/B/O NT_026943AL360219855884383RH644141240.9614188.001243.701AC019261, AC019261, AC098689, AL162260, AL360219
S/G/Y/R/B/O NT_026943AL360219856364773RH671191242.33    1 AC098689, AL360219
S/G/Y/R/B/O NT_026943AL360219856461793RH665271231.74    1 AC098689, AL360219
S/G/Y/R/B/O NT_026943AL078459857190913RH32964  14198.001244.601 AC098689, AL078459
S/G/Y/R/B/O NT_026943AL078459857190913RH644591241.06    1 AC098689, AL078459
S/G/Y/R/B/O NT_026943AL078459857216493RH32256  14193.001243.701 AC098689, AL078459
S/G/Y/R/B/O NT_026943AL078459857216493RH641911241.06    1 AC098689, AL078459
S/G/Y/R/B/O NT_026943AL078459857216823RH1358  14193.00  1 AC098689, AL078459
S/G/Y/R/B/O NT_026943AL078459857216903RH506031240.96  1243.701 AC098689, AL078459
S/G/Y/R/B/O NT_026943AL590113857884203RH642111240.96  1243.701 AL590113
S/G/Y/R/B/O NT_026943AL590113858099843RH645301240.96    1 AL359271, AL590113
S/G/Y/R/B/O NT_026943AC098654858301351          
S/G/Y/R/B/O NT_026943AC103595859656241RH660241233.33    1AC098654, AC098654, AC103595
S/G/Y/R/B/O NT_026943AL035706860562113RH638121234.56  1234.701 AL035706
S/G/Y/R/B/O NT_026943AL035706861249673RH504711236.58  1236.701 AL035706
S/G/Y/R/B/O NT_026943AL035706861520033RH265381234.66    1 AL035706
S/G/Y/R/B/O NT_026943AL138844861549723RH933821234.87    1 AL138844
S/G/Y/R/B/O NT_026943AC022950862130631          
S/G/Y/R/B/O NT_026943AC104454862301521          
S/G/Y/R/B/O NT_026943AC025340863797001RH804051232.80    1 AC025340, AL359504
S/G/Y/R/B/O NT_026943AC069041863871631RH507861236.58  1238.001AC025340, AC025340, AC069041, AL359504, AL450308
S/G/Y/R/B/O NT_026943AL450063864168213RH647311236.58    1AC025340, AC069041, AC025340, AC069041, AL450063, AL450308
S/G/Y/R/B/O NT_026943AL450063865001503RH496301236.58  1238.001AC069041, AC027046, AC069041, AL450063
S/G/Y/R/B/O NT_026943AL450063865003133RH691271238.39    1 AC027046, AL450063
S/G/Y/R/B/O NT_026943AL450063865028993RH498191238.2014084.001235.801AC069041, AC027046, AC069041, AL450063
S/G/Y/R/B/O NT_026943AL450063865041883RH642081236.5814084.001236.501AC069041, AC027046, AC069041, AL450063
S/G/Y/R/B/O NT_026943AL359273866175813RH481281236.58    1 AC025374, AL136113, AL359273
S/G/Y/R/B/O NT_026943AL359273866349563RH492551236.58    1 AC025374, AL136113, AL359273
S/G/Y/R/B/O NT_026943AC027606867277961          
S/G/Y/R/B/O NT_026943AC068008867636051RH501201236.58  1238.001AC027606, AL359762, AC027606, AC068008, AL359762
S/G/Y/R/B/O NT_026943AC068008867636051RH682981238.69    1AC027606, AL359762, AC027606, AC068008, AL359762
S/G/Y/R/B/O NT_026943AL359762868158101RH645431236.58    1AC009265, AC068008, AC009265, AC068008, AL359762
S/G/Y/R/B/O NT_026943AL359762868193271RH257621236.58    1AC009265, AC068008, AC009265, AC068008, AL359762


  NT_026943 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_026943AL359762868193481RH638011236.58  1235.801AC009265, AC068008, AC009265, AC068008, AL359762
S/G/Y/R/B/O NT_026943AL359762868198241RH707251236.58    1AC009265, AC068008, AC009265, AC068008, AL359762
S/G/Y/R/B/O NT_026943AL359762868198791RH498651236.58  1238.001AC009265, AC068008, AC009265, AC068008, AL359762
S/G/Y/R/B/O NT_026943AL359762868207431RH498711236.5814071.001236.701AC009265, AC068008, AC009265, AC068008, AL359762
S/G/Y/R/B/O NT_026943AL359762868208711RH177601238.51    1AC009265, AC068008, AC009265, AC068008, AL359762
S/G/Y/R/B/O NT_026943AL359762869101421RH506331236.58  1238.001AC009265, AC114482, AC009265, AC114482, AL359504, AL359762
S/G/Y/R/B/O NT_026943AL359762869106801RH108521236.58    1AC009265, AC114482, AC009265, AC114482, AL359504, AL359762
S/G/Y/R/B/O NT_026943AL359762869111731RH127651236.58    1AC114482, AC114482, AL359504, AL359762
S/G/Y/R/B/O NT_026943AL359762869111761RH74515  14137.00  1AC009265, AC114482, AC009265, AC114482, AL359504, AL359762
S/G/Y/R/B/O NT_026943AL359762869122311RH643361236.68  1237.901AC009265, AC114482, AC009265, AC114482, AL359504, AL359762
S/G/Y/R/B/O NT_026943AL359762869124341RH480051236.58    1AC009265, AC114482, AC009265, AC114482, AL359504, AL359762
S/G/Y/R/B/O NT_026943AC009265869208473          
S/G/Y/R/B/O NT_026943AC114482869935771          
S/G/Y/R/B/O NT_026943AC104169870786781RH923631238.41    1 AC104169
S/G/Y/R/B/O NT_026943AL139150871927383RH1033241238.71    1 AL139150
S/G/Y/R/B/O NT_026943AL358789872851863RH462551239.31    1 AC013291, AL358789
S/G/Y/R/B/O NT_026943AL358789873999803RH983901238.41    1AC021172, AC021172, AL358789, AL359271
S/G/Y/R/B/O NT_026943AL603750874195943RH639001239.94  1242.001AC021172, AC021172, AL359271, AL603750
S/G/Y/R/B/O NT_026943AL603750874427623RH642371240.42  1242.201AC021172, AC021172, AL359271, AL603750
S/G/Y/R/B/O NT_026943AC021172874714631          
S/G/Y/R/B/O NT_026943 - RH118791236.58    0  
S/G/Y/R/B/O NT_026943 - RH365211236.58    1AP001207, AC022200, AC073328, AC091052, AP001207
S/G/Y/R/B/O NT_026943 - RH14434  14099.001236.000AC022950, AC104454, AC022950, AC104454
S/G/Y/R/B/O NT_026943 - RH29956  14128.00  1AL157944, AL136986, AL157944