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  Chromosome 1 - RH Maps - Single Contig
 

Chromosome 1 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_032954 NT_004350 NT_022058 NT_004321 NT_004547 NT_021917 NT_028054 NT_032970
NT_032967 NT_021937 NT_004488 NT_022041 NT_004873 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_030571 NT_004782 NT_028053 NT_004538 NT_004511
NT_004852 NT_032963 NT_032971 NT_032972 NT_031724 NT_004386 NT_032978 NT_032977
NT_004424 NT_032976 NT_032965 NT_032973 NT_031689 NT_029223 NT_004641 NT_029865
NT_031737 NT_004636 NT_032948 NT_004464 NT_032953 NT_004483 NT_004302 NT_032960
NT_032956 NT_032974 NT_004902 NT_026943 NT_029231 NT_004658 NT_004686 NT_021979
NT_030565 NT_028050 NT_004308 NT_004623 NT_030567 NT_032957 NT_021977 NT_029860
NT_019273 NT_031697 NT_004754 NT_032961 NT_032975 NT_022052 NT_022071 NT_004434
NT_032962 NT_021907 NT_004441 NT_030577 NT_004858 NT_019291 NT_031708 NT_029226
NT_026945 NT_004982 NT_032952 NT_004668 NT_029874 NT_004487 NT_032958 NT_004599
NT_031716 NT_004671 NT_021909 NT_004416 NT_029862 NT_021905 NT_032947 NT_021877
NT_004612 NT_031718 NT_032950 NT_004525 NT_032955 NT_029863 NT_032951 NT_021953
NT_004861 NT_031696 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433
NT_030561 NT_004836 NT_031685 NT_004771 NT_004734 NT_031700 NT_031719 NT_004536
NT_032964 NT_031732 NT_032966 NT_031730 NT_029870 NT_032969 NT_032968


  NT_004873
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004873AL603890123170353RH103706151.31    3AL022101, AL022101, AL022101, AL022101, AL023585, AL023585, AL358783, AL358783, AL365443, AL603890
S/G/Y/R/B/O NT_004873AL603890123347193RH102749151.31    2AL022101, AL022101, AL023585, AL358783, AL365443, AL603890
S/G/Y/R/B/O NT_004873AL603890123351803RH92903151.31    3AL022101, AL022101, AL023585, AL023585, AL358783, AL358783, AL358783, AL358783, AL365443, AL603890
S/G/Y/R/B/O NT_004873AL603749124677193RH9867151.31    1 AC019262, AL451066, AL603749
S/G/Y/R/B/O NT_004873AL354712124782333          
S/G/Y/R/B/O NT_004873AL359771126087053RH47572151.31    1 AL359771
S/G/Y/R/B/O NT_004873AL359771126095753RH50601151.31    1 AL359771
S/G/Y/R/B/O NT_004873AL359771126095753WI-14621    148.601 AL359771
S/G/Y/R/B/O NT_004873AL359771126096513RH64470151.31    1 AL359771
S/G/Y/R/B/O NT_004873AL359771126096513WI-13136    150.001 AL359771
S/G/Y/R/B/O NT_004873AL359771126097253RH49892151.31  154.301 AL359771
S/G/Y/R/B/O NT_004873AL359771126101673RH69959151.31    1 AL359771
S/G/Y/R/B/O NT_004873AL359771126525433RH635  1782.00  1 AL359771
S/G/Y/R/B/O NT_004873AL359771126546693RH50812151.31    1 AL357492, AL359771
S/G/Y/R/B/O NT_004873AL359771126546693WI-13542    150.201 AL357492, AL359771
S/G/Y/R/B/O NT_004873AL359771126546693RH25712153.36    1 AL357492, AL359771
S/G/Y/R/B/O NT_004873AL583942127086403          
S/G/Y/R/B/O NT_004873AL031277127412763RH92373151.31    1 AC074234, AL031277
S/G/Y/R/B/O NT_004873AL031277127531993RH63906151.31    1 AC074234, AL031277
S/G/Y/R/B/O NT_004873AL031277127531993WI-11391    153.501 AC074234, AL031277
S/G/Y/R/B/O NT_004873AL031277127803533RH76172151.31    1 AC074234, AL031277
S/G/Y/R/B/O NT_004873AL031277128158613RH64368151.21  153.501 AC074234, AL031277
S/G/Y/R/B/O NT_004873AL031277128173723RH50727151.21    1 AC074234, AL031277
S/G/Y/R/B/O NT_004873AL031277128173723WI-14635    148.001 AC074234, AL031277
S/G/Y/R/B/O NT_004873AL031273128630143          
S/G/Y/R/B/O NT_004873AL033525130519153RH27217131.78    1 AC053474, AL033525
S/G/Y/R/B/O NT_004873Z99291131306833RH30654  1271.00  1 AL359086, Z99291
S/G/Y/R/B/O NT_004873AL357873131836673RH64323151.21    1 AL357873, AL359086
S/G/Y/R/B/O NT_004873AL357873131836673WI-13518    149.301 AL357873, AL359086
S/G/Y/R/B/O NT_004873AL357873131837953RH16719151.31    1 AL357873, AL359086
S/G/Y/R/B/O NT_004873AL357873132050283RH64373151.21  150.201 AL357873
S/G/Y/R/B/O NT_004873AL359873133737483RH32365  1834.00  1 AL359873
S/G/Y/R/B/O NT_004873AL359873133980243WI-4136    151.801 AL359873
S/G/Y/R/B/O NT_004873AL161427134074353          
S/G/Y/R/B/O NT_004873AL358793134845253          
S/G/Y/R/B/O NT_004873AL034395136587213RH67949171.55    2AL360012, AL513497, AL714002, AL034395, AL360012, AL513497, AL714002
S/G/Y/R/B/O NT_004873AL031732136949303RH42655161.05    1 AL031732
S/G/Y/R/B/O NT_004873AL031732136949303D1S507    154.201 AL031732
S/G/Y/R/B/O NT_004873AL031732136949803RH933  1827.00  1 AL031732
S/G/Y/R/B/O NT_004873AL031732137032853RH50666158.891834.00156.701 AL031732
S/G/Y/R/B/O NT_004873AL031293138101313RH64289158.89  156.201 AL031293, AL391866
S/G/Y/R/B/O NT_004873AL445263138584513          
S/G/Y/R/B/O NT_004873AL391215139448663RH31552  1791.00  1 AC055792, AL391215, AL391866
S/G/Y/R/B/O NT_004873AL035405140589873RH12097156.77    1 AC055792, AL035405
S/G/Y/R/B/O NT_004873AL035405140595723RH64631156.77    1 AC055792, AL035405
S/G/Y/R/B/O NT_004873AL035405140595963RH67031156.77    1 AC055792, AL035405
S/G/Y/R/B/O NT_004873AL035405140597153RH64663156.67    1 AC055792, AL035405
S/G/Y/R/B/O NT_004873AL035405141106293RH93212156.77    1 AL035405
S/G/Y/R/B/O NT_004873AL391094142128623RH102685156.67    1 AL391094
S/G/Y/R/B/O NT_004873AL158174142460273          


  NT_004873 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004873AL031283144229733RH15623156.77    1 AL031283, AL589992
S/G/Y/R/B/O NT_004873AL512883144632183RH67819156.77    2 AC009056, AL512883, AL589992
S/G/Y/R/B/O NT_004873AL512883144825083RH67819156.77    2 AC009056, AL512883, AL589992
S/G/Y/R/B/O NT_004873AL512883144825193RH33708  1810.00  1 AC009056, AL512883, AL589992
S/G/Y/R/B/O NT_004873AL512883144850663RH12255156.77    1 AC009056, AL512883, AL589992
S/G/Y/R/B/O NT_004873AL512883144967103RH42880  1814.00  1 AC009056, AL512883, AL589992
S/G/Y/R/B/O NT_004873AL121992145367463RH49160156.77  156.601 AC009056, AL121992
S/G/Y/R/B/O NT_004873AL121992145371823RH64692156.77    1 AC009056, AL121992
S/G/Y/R/B/O NT_004873AL121992145618463RH50017156.77  156.601 AC009056, AL121992
S/G/Y/R/B/O NT_004873AL121992145618463RH32464  187.00  1 AC009056, AL121992
S/G/Y/R/B/O NT_004873AL121992145633913RH70283156.77    1 AC009056, AL121992
S/G/Y/R/B/O NT_004873AL121992145634613RH64427158.391802.00156.601 AC009056, AL121992
S/G/Y/R/B/O NT_004873AL121992145641483SGC32451    158.101 AC009056, AL121992
S/G/Y/R/B/O NT_004873AL121992145641483RH25967156.77    1 AC009056, AL121992
S/G/Y/R/B/O NT_004873AL121992145644813RH68726156.77    1 AC009056, AL121992
S/G/Y/R/B/O NT_004873AL121992145645163RH103318156.77    1 AC009056, AL121992
S/G/Y/R/B/O NT_004873AL121992145661833RH1366  1816.00  1 AC009056, AL121992
S/G/Y/R/B/O NT_004873AL121992145663923RH47164156.77    1 AC009056, AL121992
S/G/Y/R/B/O NT_004873AL121992146544683RH70927156.77    1 AC058783, AL121992, X82877
S/G/Y/R/B/O NT_004873AL121992146590633RH14275  1813.00  1 AC058783, AL121992
S/G/Y/R/B/O NT_004873AL606758146990093          
S/G/Y/R/B/O NT_004873AL450998147271813RH47456156.77    1 AC058783, AL450998
S/G/Y/R/B/O NT_004873AL450998147272783RH35985156.77    1 AC058783, AL450998
S/G/Y/R/B/O NT_004873AL450998147789943RH49795156.87  155.101 AL450998
S/G/Y/R/B/O NT_004873AL450998147791213RH14176  18947.00  1 AC058783, AL450998
S/G/Y/R/B/O NT_004873AL450998147999693RH8763  19024.00  2AL121602, AL122001, AL157894, AC058783, AC058783, AL121602, AL122001, AL157894, AL360086, AL450998, S61826
S/G/Y/R/B/O NT_004873AL450998147999813RH63867154.20    2AL121602, AL122001, AL121602, AL122001
S/G/Y/R/B/O NT_004873AL450998148290113RH27137156.67    1 AL450998
S/G/Y/R/B/O NT_004873AL034555149232573RH48282156.87    1 AL034555, AL355994
S/G/Y/R/B/O NT_004873AL034555149263483RH80734154.72    1 AL034555, AL355994
S/G/Y/R/B/O NT_004873AL034555149329943RH10429158.89    1 AL034555, AL355994
S/G/Y/R/B/O NT_004873AL034555149330363RH9800156.57    1 AL034555, AL355994
S/G/Y/R/B/O NT_004873AL034555149331963RH75589159.20    1 AL034555, AL355994
S/G/Y/R/B/O NT_004873AL034555149346553RH66908156.87    1 AL034555, AL355994
S/G/Y/R/B/O NT_004873AL034555149348893RH70580154.76    1 AL034555, AL355994
S/G/Y/R/B/O NT_004873AL034555149467343RH64287156.671816.00155.101 AL034555, AL355994
S/G/Y/R/B/O NT_004873AL096775149990753RH45130161.16    1 AL096775, AL355994
S/G/Y/R/B/O NT_004873AL096775150067553RH16460159.62    1 AL096775, AL355994
S/G/Y/R/B/O NT_004873AL096775150068783RH64687159.10    1 AL096775, AL355994
S/G/Y/R/B/O NT_004873AL096775150075913RH64695158.89    1 AL096775, AL355994
S/G/Y/R/B/O NT_004873AL451042150435923RH102360160.25    1 AL451042
S/G/Y/R/B/O NT_004873AL451042150522923RH69148162.53    1 AL451042
S/G/Y/R/B/O NT_004873AL109627151261363RH91904156.77    1 AL109627
S/G/Y/R/B/O NT_004873AL109627151565983RH64220158.89  155.101 AL109627
S/G/Y/R/B/O NT_004873AL109627151565993RH25783156.87    1 AL109627
S/G/Y/R/B/O NT_004873AL109627151585733RH25795156.67    1 AL109627
S/G/Y/R/B/O NT_004873AL109627151692163RH47222161.89    1AL031602, AL031602, AL109627
S/G/Y/R/B/O NT_004873AL109627151750023RH103269156.67    1 AL109627
S/G/Y/R/B/O NT_004873AL109627151753243RH104187156.87    1 AL109627
S/G/Y/R/B/O NT_004873AL109627151783323RH68740159.20    1 AL109627


  NT_004873 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004873AL358794152793973RH93194161.05    1 AL358794
S/G/Y/R/B/O NT_004873AL358794153230743RH44440162.10    1 AL358794
S/G/Y/R/B/O NT_004873AL358794153232653RH75437162.10    1 AL358794
S/G/Y/R/B/O NT_004873AL358794153236413RH26282161.99    1 AL358794
S/G/Y/R/B/O NT_004873AL358794153239173RH70040161.16    1 AL358794
S/G/Y/R/B/O NT_004873AL358794153258503RH8050216163.34    4AC010093, AC020757, U91318, AC010093, AC020757, AC097471, AL358794, U91318
S/G/Y/R/B/O NT_004873AL358794153265653RH32897  12440.00  1 AL358794
S/G/Y/R/B/O NT_004873AL358794153265653RH5288512248.88  12345.201 AL358794
S/G/Y/R/B/O NT_004873AL669962153692863RH103552160.74    1 AL669962
S/G/Y/R/B/O NT_004873AL137802153875943RH26972158.89    1 AL137802, AL355800
S/G/Y/R/B/O NT_004873AL137802153891873RH46152160.43    1AC015618, AL713858, AC015618, AL137802, AL355800, AL713858
S/G/Y/R/B/O NT_004873AL137802153968403RH49938159.20  154.801AC015618, AL713858, AC015618, AL137802, AL355800, AL713858
S/G/Y/R/B/O NT_004873AL137802153968543RH25768160.43    1AC015618, AL713858, AC015618, AL137802, AL355800, AL713858
S/G/Y/R/B/O NT_004873AL137802154016103RH50160160.63  154.901AC015618, AL713858, AC015618, AL137802, AL355800, AL713858
S/G/Y/R/B/O NT_004873AL137802154419413RH11069162.53    3AC021338, AC021338, AL162261, AL354666, AL392186, AL590643
S/G/Y/R/B/O NT_004873AL137802154434893RH102689162.15    3AC015618, AC021338, AC021338, AL021920, AL137798, AL713858, AC015618, AC021338, AC021338, AL021920, AL137798, AL137802, AL354666, AL355800, AL392186, AL590643, AL713858
S/G/Y/R/B/O NT_004873AC015618154737701RH64758161.99    2AL713858, AC015618, AL354666, AL355149, AL355800, AL713858
S/G/Y/R/B/O NT_004873AC015618154861571WI-9839    155.102 AL354666
S/G/Y/R/B/O NT_004873AL713858155016721RH64758161.99    2AC015618, AC015618, AL354666, AL355149, AL355800, AL713858
S/G/Y/R/B/O NT_004873AL713858155140671WI-9839    155.102 AL354666
S/G/Y/R/B/O NT_004873AL137798155613283RH64570163.36    1AC015618, AL713858, AC015618, AL137798, AL354666, AL355800, AL356581, AL590643, AL713858
S/G/Y/R/B/O NT_004873AL137798155618503RH75551161.78    1AL713858, AL137798, AL354666, AL355800, AL356581, AL590643, AL713858
S/G/Y/R/B/O NT_004873AL137798155740953RH50674163.32  159.801AL713858, AL137798, AL354666, AL355800, AL356581, AL392186, AL590643, AL590643, AL713858
S/G/Y/R/B/O NT_004873AL137798155740953RH14815  1598.00  1AL713858, AL137798, AL354666, AL355800, AL356581, AL392186, AL590643, AL590643, AL713858
S/G/Y/R/B/O NT_004873AL137798156060793RH92673163.47    2AC021338, AL021920, AC021338, AL021920, AL137798, AL354666, AL392186, AL590643, U28054
S/G/Y/R/B/O NT_004873AL137798156225273RH11069162.53    3AC021338, AC021338, AL162261, AL354666, AL392186, AL590643
S/G/Y/R/B/O NT_004873AL137798156240643RH102689162.15    3AC015618, AC021338, AC021338, AL021920, AL137802, AL713858, AC015618, AC021338, AC021338, AL021920, AL137798, AL137802, AL354666, AL355800, AL392186, AL590643, AL713858
S/G/Y/R/B/O NT_004873AL137798156391883RH18177X61.50    1AL021920, AL021920, AL137798
S/G/Y/R/B/O NT_004873AL137798156404173RH69571163.47    1AC021338, AL021920, AC021338, AL021920, AL137798
S/G/Y/R/B/O NT_004873AL137798156413693RH49902162.21    1AC021338, AL021920, AC021338, AL021920, AL137798
S/G/Y/R/B/O NT_004873AL137798156413693WI-8685    154.201AC021338, AL021920, AC021338, AL021920, AL137798
S/G/Y/R/B/O NT_004873AL021920156949263RH102689162.15    3AC015618, AC021338, AC021338, AL137798, AL137802, AL713858, AC015618, AC021338, AC021338, AL021920, AL137798, AL137802, AL354666, AL355800, AL392186, AL590643, AL713858
S/G/Y/R/B/O NT_004873AL021920156962433RH11069162.53    3AC021338, AC021338, AL162261, AL354666, AL392186, AL590643
S/G/Y/R/B/O NT_004873AL021920157107413RH13864  37939.00  1AC021338, AC021338, AC021338, AC021338, AL021920, AL354666
S/G/Y/R/B/O NT_004873AL021920157107413RH7921  37932.00  1AC021338, AC021338, AC021338, AC021338, AL021920, AL354666
S/G/Y/R/B/O NT_004873AL021920157129163RH92673163.47    2AC021338, AL137798, AC021338, AL021920, AL137798, AL354666, AL392186, AL590643, U28054
S/G/Y/R/B/O NT_004873AL021920157212733RH102089162.58    2AC021338, AC021338, AC064796, AL360294, AC021338, AC021338, AC064796, AL021920, AL356369, AL360294, AL391832
S/G/Y/R/B/O NT_004873AC021338157550971          
S/G/Y/R/B/O NT_004873 - RH103019158.89    0 AL355994
S/G/Y/R/B/O NT_004873 - RH32465  1815.00  1AL136528, AL136528
S/G/Y/R/B/O NT_004873 - RH104540156.87    0  
S/G/Y/R/B/O NT_004873 - RH45538156.67    0AL034555, AL034555, AL355994
S/G/Y/R/B/O NT_004873 - RH48605156.77    0 AC058783
S/G/Y/R/B/O NT_004873 - RH49853160.84    0 AF294032
S/G/Y/R/B/O NT_004873 - RH64190156.67    0AL034555, AL034555, AL355994
S/G/Y/R/B/O NT_004873 - RH68682156.87    0AL034555, AL034555, AL355994
S/G/Y/R/B/O NT_004873 - RH69944158.89    0  
S/G/Y/R/B/O NT_004873 - RH71372156.67    0  
S/G/Y/R/B/O NT_004873 - RH74803156.57    0  
S/G/Y/R/B/O NT_004873 - RH75620153.63    0AL359771, AL359771


  NT_004873 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004873 - RH76111162.31    1AL035413, AL035413, AL360017