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  Chromosome 1 - RH Maps - Single Contig
 

Chromosome 1 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_032954 NT_004350 NT_022058 NT_004321 NT_004547 NT_021917 NT_028054 NT_032970
NT_032967 NT_021937 NT_004488 NT_022041 NT_004873 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_030571 NT_004782 NT_028053 NT_004538 NT_004511
NT_004852 NT_032963 NT_032971 NT_032972 NT_031724 NT_004386 NT_032978 NT_032977
NT_004424 NT_032976 NT_032965 NT_032973 NT_031689 NT_029223 NT_004641 NT_029865
NT_031737 NT_004636 NT_032948 NT_004464 NT_032953 NT_004483 NT_004302 NT_032960
NT_032956 NT_032974 NT_004902 NT_026943 NT_029231 NT_004658 NT_004686 NT_021979
NT_030565 NT_028050 NT_004308 NT_004623 NT_030567 NT_032957 NT_021977 NT_029860
NT_019273 NT_031697 NT_004754 NT_032961 NT_032975 NT_022052 NT_022071 NT_004434
NT_032962 NT_021907 NT_004441 NT_030577 NT_004858 NT_019291 NT_031708 NT_029226
NT_026945 NT_004982 NT_032952 NT_004668 NT_029874 NT_004487 NT_032958 NT_004599
NT_031716 NT_004671 NT_021909 NT_004416 NT_029862 NT_021905 NT_032947 NT_021877
NT_004612 NT_031718 NT_032950 NT_004525 NT_032955 NT_029863 NT_032951 NT_021953
NT_004861 NT_031696 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433
NT_030561 NT_004836 NT_031685 NT_004771 NT_004734 NT_031700 NT_031719 NT_004536
NT_032964 NT_031732 NT_032966 NT_031730 NT_029870 NT_032969 NT_032968


  NT_028054
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_028054AL68381251795951RH98600125.38    1 AL683812
S/G/Y/R/B/O NT_028054Z9763552602953RH63776126.29  125.801AL683812, AL683812, Z97635
S/G/Y/R/B/O NT_028054Z9805253216923RH49295126.291290.00  1 Z98052
S/G/Y/R/B/O NT_028054Z9798754058733RH49315127.20    1 Z97987
S/G/Y/R/B/O NT_028054Z9798755068643CHLC.GATA4H04.128    134.901 AL034378, Z97987
S/G/Y/R/B/O NT_028054AL36519455559683          
S/G/Y/R/B/O NT_028054AL15771656196163          
S/G/Y/R/B/O NT_028054AC07348256799271          
S/G/Y/R/B/O NT_028054AL59621056860911          
S/G/Y/R/B/O NT_028054Z9888458766983RH64280123.89  121.201 AL359881, Z98884
S/G/Y/R/B/O NT_028054Z9888458929143RH4446812.39    1 AL359881, AL365441, Z98884
S/G/Y/R/B/O NT_028054Z9888458936343RH36013131.16    1 AL359881, AL365441, Z98884
S/G/Y/R/B/O NT_028054Z9888459062373RH14641  1349.00121.201 AC025220, AL359881, AL365441, Z98884
S/G/Y/R/B/O NT_028054Z9888459064513RH50106123.89  121.201 AC025220, AL359881, AL365441, Z98884
S/G/Y/R/B/O NT_028054Z9888459358673RH78631132.73    1 AC025220, AL359881, AL365441, Z98884
S/G/Y/R/B/O NT_028054Z9888459390153RH45812130.46    1 AC025220, AL359881, AL365441, Z98884
S/G/Y/R/B/O NT_028054Z9888459693173RH64640132.73    1 AC025220, AL359881, AL365441, Z98884
S/G/Y/R/B/O NT_028054Z9888459701503RH93635132.73    1 AC025220, AL359881, AL365441, Z98884
S/G/Y/R/B/O NT_028054Z9888459701783RH50128132.73  125.901 AC025220, AL359881, AL365441, Z98884
S/G/Y/R/B/O NT_028054Z9888459702733RH64808131.72    1 AC025220, AL359881, AL365441, Z98884
S/G/Y/R/B/O NT_028054AL00918360416163RH91876132.73    1AC025225, AC025220, AC025225, AL009183, AL512402
S/G/Y/R/B/O NT_028054AL00918360456593RH64464131.261346.00  1AC025225, AC025220, AC025225, AL009183, AL512402
S/G/Y/R/B/O NT_028054AL00918360456593SGC35316    12.001AC025225, AC025220, AC025225, AL009183, AL512402
S/G/Y/R/B/O NT_028054AL00918360460383RH17617132.73    1AC025225, AC025220, AC025225, AL009183, AL512402
S/G/Y/R/B/O NT_028054AL00918360460633RH64183132.73    1AC025225, AC025220, AC025225, AL009183, AL512402
S/G/Y/R/B/O NT_028054AL03441761371463RH66928132.73    1AC025225, AL672201, AC025225, AL034417, AL512402, AL672201
S/G/Y/R/B/O NT_028054AL03441761384693RH92580132.73    1AC025225, AL672201, AC025225, AL034417, AL512402, AL672201
S/G/Y/R/B/O NT_028054AL03441761422883WI-17925    124.901AC025225, AL672201, AC025225, AL034417, AL512402, AL672201
S/G/Y/R/B/O NT_028054AL03441761422883RH6440514.18    1AC025225, AL672201, AC025225, AL034417, AL512402, AL672201
S/G/Y/R/B/O NT_028054AL03441761460553RH67153132.73    1 AL034417
S/G/Y/R/B/O NT_028054AC02522561987731          
S/G/Y/R/B/O NT_028054AL67220161996351          
S/G/Y/R/B/O NT_028054AC02055262721213          
S/G/Y/R/B/O NT_028054AL35607264662583RH36035132.83    1 AC024508, AC034143, AL356072
S/G/Y/R/B/O NT_028054AL35607264748043RH10121132.83    1AC016049, AC016049, AC024508, AC034143, AC079745, AL356072
S/G/Y/R/B/O NT_028054AL35607264759473RH50665131.201390.00125.901AC016049, AC016049, AC024508, AC034143, AC079745, AL356072
S/G/Y/R/B/O NT_028054AL35607264768253RH44393132.83    1AC016049, AC016049, AC024508, AC034143, AC079745, AL356072
S/G/Y/R/B/O NT_028054AL35607265209033RH68112132.73    1AC016049, AC016049, AC079745, AL356072
S/G/Y/R/B/O NT_028054AC01604965336531RH64274132.73  124.901AL096855, AC016049, AC034143, AL096855
S/G/Y/R/B/O NT_028054AC01604965336531RH68650132.73    1AL096855, AC016049, AC034143, AL096855
S/G/Y/R/B/O NT_028054AL09685565570691RH103328132.73    1AC016049, AC016049, AC034143, AL096855
S/G/Y/R/B/O NT_028054AL09685578573791CHLC.GGAT3G04    11.801 AL096855
S/G/Y/R/B/O NT_028054AL09685579253621RH64410132.73  124.901AC026160, AC026160, AL096855
S/G/Y/R/B/O NT_028054AL51233066243763          
S/G/Y/R/B/O NT_028054AL59012867626122D1S214    121.201 AL391218, AL590128
S/G/Y/R/B/O NT_028054AL59012867626122RH13272125.381285.00  1 AL391218, AL590128
S/G/Y/R/B/O NT_028054AL59012867768172RH102988125.38    1 AL391218, AL590128
S/G/Y/R/B/O NT_028054AL59116368366962          
S/G/Y/R/B/O NT_028054AL15917769558823          
S/G/Y/R/B/O NT_028054AL03144770117673RH46494127.30    1 AC062024, AC108123, AL031447


  NT_028054 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_028054AL03144770302363RH49941127.10  130.401 AC108123, AL031447
S/G/Y/R/B/O NT_028054AL03144770303033RH67207127.30    1 AC062024, AC108123, AL031447
S/G/Y/R/B/O NT_028054AL03144770406903RH13732  1198.00  1 AC062024, AC108123, AL031447
S/G/Y/R/B/O NT_028054AL59186670735963RH64576127.00    1AL031447, AC062024, AC108123, AL031447, AL591866
S/G/Y/R/B/O NT_028054AL59186670736803RH64806127.30    1AL031447, AC062024, AC108123, AL031447, AL591866
S/G/Y/R/B/O NT_028054AL59186670737313RH24947127.00    1AL031447, AC062024, AC108123, AL031447, AL591866
S/G/Y/R/B/O NT_028054AL59186670749233RH71462127.30    1AL031447, AC062024, AC108123, AL031447, AL591866, U45325
S/G/Y/R/B/O NT_028054AL59186670755943RH78576127.20    1AL031447, AC062024, AC108123, AL031447, AL591866, U45325
S/G/Y/R/B/O NT_028054AL59186670857323GCT15G02    128.301 AC062024, AC108123, AL591866
S/G/Y/R/B/O NT_028054AL59186671431663RH68223125.38    1 AC062024, AL591866
S/G/Y/R/B/O NT_028054AL59186671431883RH26086123.89    1 AC062024, AL591866
S/G/Y/R/B/O NT_028054AL15821771880271RH47727123.89    1 AL158217
S/G/Y/R/B/O NT_028054AL15821771983851RH78804127.00    1 AL158217
S/G/Y/R/B/O NT_028054AL15821772039111RH75593130.33    1 AL158217
S/G/Y/R/B/O NT_028054AL15821772044261RH49985123.89  123.601 AL158217
S/G/Y/R/B/O NT_028054AL03184872121653          
S/G/Y/R/B/O NT_028054AL03184773652533RH42376123.89  123.601 AL031847
S/G/Y/R/B/O NT_028054AL03184774004513RH70714125.38    1 AL031847, AL356496
S/G/Y/R/B/O NT_028054AL03184774004893RH9168512.39    1 AL031847, AL356496
S/G/Y/R/B/O NT_028054AL03184774172443RH11867123.89    1 AL031847, AL356496
S/G/Y/R/B/O NT_028054AL03184774350513RH49244123.891202.00  1 AL031847
S/G/Y/R/B/O NT_028054AL03184774402923RH64691126.29    1 AL031847, AL356496
S/G/Y/R/B/O NT_028054AL03184774411153WI-13857    123.601 AL031847, AL356496
S/G/Y/R/B/O NT_028054AL03184774411153RH6433210.69    1 AL031847, AL356496
S/G/Y/R/B/O NT_028054AL03184774433813RH12746125.38    1 AL031847, AL356496
S/G/Y/R/B/O NT_028054AL03184774441863RH69711125.38    1 AL031847, AL356496
S/G/Y/R/B/O NT_028054AL03184774442443RH101937125.48    1 AL031847, AL356496
S/G/Y/R/B/O NT_028054AL03184774782543RH1348  32819.00  2AC074033, AC114305, AC074033, AC114305, AL031847, AL589792
S/G/Y/R/B/O NT_028054AL03184774783203RH8624  32819.00  2AC074033, AC114305, AC074033, AC114305, AL031847, AL589792
S/G/Y/R/B/O NT_028054AL03184774787123RH1230  1237.00  1 AL031847, AL589792
S/G/Y/R/B/O NT_028054AL03184774787973RH64486123.89    1 AL031847, AL589792
S/G/Y/R/B/O NT_028054AL03540675597043RH50089123.89  123.601 AL035406, AL589792
S/G/Y/R/B/O NT_028054AL03540675638193RH12592125.38    1 AL035406, AL589792
S/G/Y/R/B/O NT_028054AL03540675786283RH68900123.89    1 AL035406
S/G/Y/R/B/O NT_028054AL35626176811993          
S/G/Y/R/B/O NT_028054AL35669378018941RH104479123.89    1 AC026968, AL356693
S/G/Y/R/B/O NT_028054AL35669378019091RH10101125.38    1 AL356693
S/G/Y/R/B/O NT_028054AL35771379459313RH64561132.73    1AC026160, AC026160, AL357713
S/G/Y/R/B/O NT_028054AL35771379850383RH64522131.26    1AC026160, AC026160, AL357713
S/G/Y/R/B/O NT_028054AC02616080247071          
S/G/Y/R/B/O NT_028054AL35755281107391RH65579132.73    1AC026160, AC025240, AC026160, AL357552
S/G/Y/R/B/O NT_028054AL35755281368801RH46183131.72    1 AL357552
S/G/Y/R/B/O NT_028054AL35493081763083          
S/G/Y/R/B/O NT_028054AL13941582091313RH1906  1452.00  1 AC025240, AL139415, X16290
S/G/Y/R/B/O NT_028054AL13941582093663RH93736132.73    1 AC025240, AL139415, X16290
S/G/Y/R/B/O NT_028054AL13941582227753RH11129132.73    1 AC025240, AL139415
S/G/Y/R/B/O NT_028054AL13941582277043RH104034131.16    1 AC025240, AL139415, X16287
S/G/Y/R/B/O NT_028054AL13941583228613RH76224132.73    1 AL139415, AL356306
S/G/Y/R/B/O NT_028054AL15804883851501RH64706131.26    1 AL158048, AL356306
S/G/Y/R/B/O NT_028054AL15804883851521RH69141133.68    1 AL158048, AL356306


  NT_028054 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_028054AL15804883853901RH70560132.73    1 AL158048, AL356306, U11843
S/G/Y/R/B/O NT_028054AL15804883856501RH80220132.83    1 AL158048, AL356306, U11843
S/G/Y/R/B/O NT_028054AL15804883886481RH1229  1436.00  1 AL158048, AL356306
S/G/Y/R/B/O NT_028054AL15804883886961RH64477131.68    1 AL158048, AL356306
S/G/Y/R/B/O NT_028054AL15804884175221RH11119132.73    1 AL158048
S/G/Y/R/B/O NT_028054AL15804884485841RH102826132.73    1 AL158048
S/G/Y/R/B/O NT_028054AL15804884494021RH70291132.73    1 AL158048
S/G/Y/R/B/O NT_028054 - RH104565132.73    0  
S/G/Y/R/B/O NT_028054 - RH14428  1209.00  1AL691523, AL691523
S/G/Y/R/B/O NT_028054 - WI-4221    121.600  
S/G/Y/R/B/O NT_028054 - RH12587125.38    0  
S/G/Y/R/B/O NT_028054 - RH30654  1271.00  1Z99291, AL359086, Z99291
S/G/Y/R/B/O NT_028054 - RH27217131.78    1AL033525, AC053474, AL033525
S/G/Y/R/B/O NT_028054 - RH34644  1195.00  0  
S/G/Y/R/B/O NT_028054 - RH64314131.89    1AL109811, AL713997, AJ300188, AL109811, AL713997
S/G/Y/R/B/O NT_028054 - RH50179132.73  124.900AL672201, AL512402, AL672201
S/G/Y/R/B/O NT_028054 - RH63871132.73    1AL691449, AL691449
S/G/Y/R/B/O NT_028054 - SGC34815    124.901Z98044, Z98044
S/G/Y/R/B/O NT_028054 - RH64448131.89    1AL031296, AL031296
S/G/Y/R/B/O NT_028054 - WI-16324    125.701AL691449, AL691449
S/G/Y/R/B/O NT_028054 - RH64510132.83    0AC016049, AL356072, AC016049, AC034143, AL356072
S/G/Y/R/B/O NT_028054 - D1S450    131.200  
S/G/Y/R/B/O NT_028054 - RH67842132.73    0  
S/G/Y/R/B/O NT_028054 - RH76593127.10    0