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  Chromosome 1 - RH Maps - Single Contig
 

Chromosome 1 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_032954 NT_004350 NT_022058 NT_004321 NT_004547 NT_021917 NT_028054 NT_032970
NT_032967 NT_021937 NT_004488 NT_022041 NT_004873 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_030571 NT_004782 NT_028053 NT_004538 NT_004511
NT_004852 NT_032963 NT_032971 NT_032972 NT_031724 NT_004386 NT_032978 NT_032977
NT_004424 NT_032976 NT_032965 NT_032973 NT_031689 NT_029223 NT_004641 NT_029865
NT_031737 NT_004636 NT_032948 NT_004464 NT_032953 NT_004483 NT_004302 NT_032960
NT_032956 NT_032974 NT_004902 NT_026943 NT_029231 NT_004658 NT_004686 NT_021979
NT_030565 NT_028050 NT_004308 NT_004623 NT_030567 NT_032957 NT_021977 NT_029860
NT_019273 NT_031697 NT_004754 NT_032961 NT_032975 NT_022052 NT_022071 NT_004434
NT_032962 NT_021907 NT_004441 NT_030577 NT_004858 NT_019291 NT_031708 NT_029226
NT_026945 NT_004982 NT_032952 NT_004668 NT_029874 NT_004487 NT_032958 NT_004599
NT_031716 NT_004671 NT_021909 NT_004416 NT_029862 NT_021905 NT_032947 NT_021877
NT_004612 NT_031718 NT_032950 NT_004525 NT_032955 NT_029863 NT_032951 NT_021953
NT_004861 NT_031696 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433
NT_030561 NT_004836 NT_031685 NT_004771 NT_004734 NT_031700 NT_031719 NT_004536
NT_032964 NT_031732 NT_032966 NT_031730 NT_029870 NT_032969 NT_032968


  NT_004302
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004302AL606535773221883          
S/G/Y/R/B/O NT_004302AL606463774420023          
S/G/Y/R/B/O NT_004302AL391297775993063          
S/G/Y/R/B/O NT_004302AC105273777103461          
S/G/Y/R/B/O NT_004302AC026490777396051          
S/G/Y/R/B/O NT_004302AL590092778162463          
S/G/Y/R/B/O NT_004302AC091615778482923          
S/G/Y/R/B/O NT_004302AC105269779326183          
S/G/Y/R/B/O NT_004302AL591463780503013CHLC.GATA5G07.526    1216.101 AL591463
S/G/Y/R/B/O NT_004302AL591463780503773CHLC.GATA61A06    1216.701 AL591463
S/G/Y/R/B/O NT_004302AL359200781218503          
S/G/Y/R/B/O NT_004302AC090530781837891          
S/G/Y/R/B/O NT_004302AC023198782392361          
S/G/Y/R/B/O NT_004302AL359205782481173          
S/G/Y/R/B/O NT_004302AC098692784313773RH667031193.94    1AL354708, AC098692, AL354708
S/G/Y/R/B/O NT_004302AC098692784314913RH676921195.12    1AL354708, AC098692, AL354708
S/G/Y/R/B/O NT_004302AC098692784540373RH123161191.36    1AC018404, AL354708, AC018404, AC098692, AL354708
S/G/Y/R/B/O NT_004302AC098692784557053RH639461187.68  1216.701AC018404, AL354708, AC018404, AC098692, AL354708
S/G/Y/R/B/O NT_004302AC098692784557383RH258251189.50    1AC018404, AL354708, AC018404, AC098692, AL354708
S/G/Y/R/B/O NT_004302AC098692784570893SGC38103    1225.801AC018404, AL354708, AC018404, AC098692, AL354708
S/G/Y/R/B/O NT_004302AC098692784570893RH499071190.59    1AC018404, AL354708, AC018404, AC098692, AL354708
S/G/Y/R/B/O NT_004302AC098692784892273RH928781191.67    1AC018404, AL354708, AC018404, AC098692, AL354708
S/G/Y/R/B/O NT_004302AL354708784915531          
S/G/Y/R/B/O NT_004302AC018404785214881          
S/G/Y/R/B/O NT_004302AC093158786123373SGC31192    1225.501 AC093158
S/G/Y/R/B/O NT_004302AC093158786123373RH502881190.30    1 AC093158
S/G/Y/R/B/O NT_004302AC105271786831651          
S/G/Y/R/B/O NT_004302AC073887786860921          
S/G/Y/R/B/O NT_004302AC013557787180711RH924971255.79    2AC073301, AC098690, AC013557, AC073301, AC098690, AL356236, AL583862
S/G/Y/R/B/O NT_004302AC013557787619991RH661231255.90    2AC073301, AC013557, AC073301
S/G/Y/R/B/O NT_004302AC019177787868731RH5186211229.09  11290.903AC004770, AC013557, AC073301, AC004228, AC004770, AC013557, AC019177, AC073301, AL356236, AP000591, AP002380, U73629
S/G/Y/R/B/O NT_004302AC019177787871031RH13883  112680.00  2AC004770, AC004228, AC004770, AP000591, U73629
S/G/Y/R/B/O NT_004302AC019177787871291RH1178711237.07    3AC004770, AC013557, AC073301, AC004228, AC004770, AC013557, AC019177, AC073301, AL356236, AP000591, AP002380, U73629
S/G/Y/R/B/O NT_004302AC098691787927471          
S/G/Y/R/B/O NT_004302AL355871788454373          
S/G/Y/R/B/O NT_004302AC021075789813313RH37885  14437.00  1AC027623, AC034169, AL355871, AL714022, AC021075, AC027623, AC034169, AL355871, AL512381, AL714022
S/G/Y/R/B/O NT_004302AC021075789884613RH414903162.52    1AC027623, AC027623, AL512381
S/G/Y/R/B/O NT_004302AC027623790397891          
S/G/Y/R/B/O NT_004302AC034169790427651          
S/G/Y/R/B/O NT_004302AL714022790440401          
S/G/Y/R/B/O NT_004302AC058795790696121          
S/G/Y/R/B/O NT_004302AC015897791656901RH1026301197.22    1AC019284, AC058795, AC015897, AC019284, AC058795
S/G/Y/R/B/O NT_004302AC019284791882781SGC34951    1220.301AC015897, AC015897, AC019284
S/G/Y/R/B/O NT_004302AC019284791882781RH507811191.36    1AC015897, AC015897, AC019284
S/G/Y/R/B/O NT_004302AC019284791883401RH445801190.20    1AC015897, AC015897, AC019284
S/G/Y/R/B/O NT_004302AC019284792436341RH923191191.36    1AC015897, AC096950, AC015897, AC019284, AC096950
S/G/Y/R/B/O NT_004302AC096950792743913          
S/G/Y/R/B/O NT_004302AC009418793272451RH690101197.22    1 AC009418, L31526
S/G/Y/R/B/O NT_004302AC009418793273131RH680521197.43    1 AC009418, L31526
S/G/Y/R/B/O NT_004302AC009418793274991RH647601189.50    1 AC009418, L31526


  NT_004302 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004302AL359969793357581          
S/G/Y/R/B/O NT_004302AC091611794088373WI-3426    1220.401AL359969, AC091611, AL359969, AL390740
S/G/Y/R/B/O NT_004302AC099334796241483RH250981263.37    1 AC099334
S/G/Y/R/B/O NT_004302AC099334796262283RH13823  14442.00  1 AC099334
S/G/Y/R/B/O NT_004302AC099334796262483RH644421261.4514452.001262.201 AC099334
S/G/Y/R/B/O NT_004302AC099334796263573RH689931257.67    1 AC099334
S/G/Y/R/B/O NT_004302AL445992796575033          
S/G/Y/R/B/O NT_004302AL162263796924563CHLC.ATA2E04    1262.101 AL162263, AL590555
S/G/Y/R/B/O NT_004302AL162263797557163RH507011265.25  1263.401AC024195, AC024195, AL162263, AL590555
S/G/Y/R/B/O NT_004302AL390780797617833          
S/G/Y/R/B/O NT_004302AC024195798208791          
S/G/Y/R/B/O NT_004302AC114486798259521          
S/G/Y/R/B/O NT_004302AL355573799995071          
S/G/Y/R/B/O NT_004302AC023379800273001          
S/G/Y/R/B/O NT_004302AC099786800657913          
S/G/Y/R/B/O NT_004302AL357732802446931          
S/G/Y/R/B/O NT_004302AC073499802777451RH646551190.00    1AC027384, AL357732, AC027384, AC073499, AL357732
S/G/Y/R/B/O NT_004302AC073499802778141RH672921197.43    1AC027384, AL357732, AC027384, AC073499, AL357732
S/G/Y/R/B/O NT_004302AC107627802831473          
S/G/Y/R/B/O NT_004302AC053498803460251          
S/G/Y/R/B/O NT_004302AC027384803742131          
S/G/Y/R/B/O NT_004302AC093156804711063RH501481192.1715250.001217.101AC053498, AC053498, AC093156
S/G/Y/R/B/O NT_004302AC093156804711923RH704551195.12    1AC053498, AC053498, AC093156
S/G/Y/R/B/O NT_004302AC093156804861613D1S481    1220.301 AC093156
S/G/Y/R/B/O NT_004302AC093156804861613RH424811194.80    1 AC093156
S/G/Y/R/B/O NT_004302AL096829806590463WI-15157    1219.301 AL096829
S/G/Y/R/B/O NT_004302AL096829806590463RH642491191.86    1 AL096829
S/G/Y/R/B/O NT_004302AL137803807292683          
S/G/Y/R/B/O NT_004302AL357314808146763RH7022214198.76    2AC006530, AC006530, AC009337, AL357314, AL359206, AL592082, D26535
S/G/Y/R/B/O NT_004302AL357314808348293WI-7105    1219.201 AL357314, AL359206, AL592082
S/G/Y/R/B/O NT_004302AL357314808348293RH497441193.6214234.00  1 AL357314, AL359206, AL592082
S/G/Y/R/B/O NT_004302AL357314808353063RH176681205.30    1 AL357314, AL359206, AL592082
S/G/Y/R/B/O NT_004302AL357314808666033RH1045021192.48    1 AC009337
S/G/Y/R/B/O NT_004302AL357314808669123RH171651205.30    1 AC009337, AL357314, AL592082
S/G/Y/R/B/O NT_004302AL357314808669193RH639361193.67    1 AC009337, AL357314, AL592082
S/G/Y/R/B/O NT_004302AL445464808965493          
S/G/Y/R/B/O NT_004302AC092813809976463          
S/G/Y/R/B/O NT_004302AC012517811781751          
S/G/Y/R/B/O NT_004302 - RH1028251230.39    1AL353771, AC019213, AL353771
S/G/Y/R/B/O NT_004302 - WI-15123    1225.401AL117353, AL117353
S/G/Y/R/B/O NT_004302 - RH181931230.39    1AL353771, AC019213, AL353771
S/G/Y/R/B/O NT_004302 - WI-4469    1225.401AL356600, AC009694, AL158079, AL356600
S/G/Y/R/B/O NT_004302 - RH644441230.39    1AL138789, AL139413, AL138789, AL139413
S/G/Y/R/B/O NT_004302 - RH643301230.39    1AL353771, AC019213, AL353771
S/G/Y/R/B/O NT_004302 - RH654501230.39    1AL391728, AC055743, AL391728