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  Chromosome 1 - RH Maps - Single Contig
 

Chromosome 1 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_032954 NT_004350 NT_022058 NT_004321 NT_004547 NT_021917 NT_028054 NT_032970
NT_032967 NT_021937 NT_004488 NT_022041 NT_004873 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_030571 NT_004782 NT_028053 NT_004538 NT_004511
NT_004852 NT_032963 NT_032971 NT_032972 NT_031724 NT_004386 NT_032978 NT_032977
NT_004424 NT_032976 NT_032965 NT_032973 NT_031689 NT_029223 NT_004641 NT_029865
NT_031737 NT_004636 NT_032948 NT_004464 NT_032953 NT_004483 NT_004302 NT_032960
NT_032956 NT_032974 NT_004902 NT_026943 NT_029231 NT_004658 NT_004686 NT_021979
NT_030565 NT_028050 NT_004308 NT_004623 NT_030567 NT_032957 NT_021977 NT_029860
NT_019273 NT_031697 NT_004754 NT_032961 NT_032975 NT_022052 NT_022071 NT_004434
NT_032962 NT_021907 NT_004441 NT_030577 NT_004858 NT_019291 NT_031708 NT_029226
NT_026945 NT_004982 NT_032952 NT_004668 NT_029874 NT_004487 NT_032958 NT_004599
NT_031716 NT_004671 NT_021909 NT_004416 NT_029862 NT_021905 NT_032947 NT_021877
NT_004612 NT_031718 NT_032950 NT_004525 NT_032955 NT_029863 NT_032951 NT_021953
NT_004861 NT_031696 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433
NT_030561 NT_004836 NT_031685 NT_004771 NT_004734 NT_031700 NT_031719 NT_004536
NT_032964 NT_031732 NT_032966 NT_031730 NT_029870 NT_032969 NT_032968


  NT_004734
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004734AC0685982385735101          
S/G/Y/R/B/O NT_004734AC0920162386067671          
S/G/Y/R/B/O NT_004734AC0256902387063291RH4813110366.74    2AC105911, AL513534, AC025690, AC105911, AL513534
S/G/Y/R/B/O NT_004734AC0256902387074721RH471961755.25    1AC105911, AC025690, AC105911
S/G/Y/R/B/O NT_004734AC0256902387080691RH915501755.15    1AC105911, AC025690, AC105911
S/G/Y/R/B/O NT_004734AC0256902387136561RH924461755.25    1AC105911, AC025690, AC105911
S/G/Y/R/B/O NT_004734AC0256902387151341RH644751755.25  1929.701AC105911, AC025690, AC025690, AC105911
S/G/Y/R/B/O NT_004734AC0256902409139451RH938031755.15    1AC105911, AC025690, AC105911
S/G/Y/R/B/O NT_004734AC1059112386999382RH937461755.15    1AC025690, AC025690, AC105911
S/G/Y/R/B/O NT_004734AC1059112387039512RH504921755.25  1931.001AC025690, AC025690, AC105911
S/G/Y/R/B/O NT_004734AC1059112387171832RH181257246.28    2AC009468, AC025690, AC009468, AC025690, AC105911
S/G/Y/R/B/O NT_004734AC1059112387195712RH783031755.35    1AC025690, AC025690, AC105911
S/G/Y/R/B/O NT_004734AC1059112419704162RH929681755.25    1AC025690, AC025690, AC105911
S/G/Y/R/B/O NT_004734AL3653662387457873          
S/G/Y/R/B/O NT_004734AL5916862389953743WI-9664    1922.801 AC012079, AC024501, AL390999, AL513486, AL591686
S/G/Y/R/B/O NT_004734AL5916862389953743RH639501750.44    1 AC012079, AC024501, AL390999, AL513486, AL591686
S/G/Y/R/B/O NT_004734AL5916862389953743RH765561750.44    1 AC012079, AC024501, AL390999, AL513486, AL591686
S/G/Y/R/B/O NT_004734AL5916862389965523RH470791753.73    1 AC012079, AC024501, AL390999, AL513486, AL591686
S/G/Y/R/B/O NT_004734AL5916862390854233RH1038111750.34    1 AC012079, AC024501, AC026828, AL390999, AL513486, AL591686
S/G/Y/R/B/O NT_004734AL5916862390980213WI-4683    1922.801AL583845, AC012079, AC024501, AC026828, AL390999, AL513486, AL583845
S/G/Y/R/B/O NT_004734AL5838452390981953          
S/G/Y/R/B/O NT_004734AL3602712391503493          
S/G/Y/R/B/O NT_004734AC0133712392451381          
S/G/Y/R/B/O NT_004734AL4457042393441691RH1044201755.15    1AC027068, AC027068, AL445704
S/G/Y/R/B/O NT_004734AC0270682392991091          
S/G/Y/R/B/O NT_004734AC0997852394067441          
S/G/Y/R/B/O NT_004734AC0685652394717981          
S/G/Y/R/B/O NT_004734AL3548752395640031RH497141752.90  1926.201AC068565, AC099785, AC068565, AC099785, AL354875
S/G/Y/R/B/O NT_004734AL4456752396898353D1S2679    1924.501AL354875, AL354875, AL445675, AL590679
S/G/Y/R/B/O NT_004734AL6038252398150133          
S/G/Y/R/B/O NT_004734AL6065342398505553          
S/G/Y/R/B/O NT_004734AC0927822400320973          
S/G/Y/R/B/O NT_004734AC0928062401280603          
S/G/Y/R/B/O NT_004734AC0965392403621301RH124171755.25    1 AC096539
S/G/Y/R/B/O NT_004734AC0965392403626101RH645951755.25    1 AC096539
S/G/Y/R/B/O NT_004734AC0965392403628711RH782421755.25    1 AC096539
S/G/Y/R/B/O NT_004734AC0965392403640591RH127601755.25    1 AC096539
S/G/Y/R/B/O NT_004734AC0965392403650731RH646591755.25    1 AC096539
S/G/Y/R/B/O NT_004734AC0965392403653281RH123521755.15    1 AC096539
S/G/Y/R/B/O NT_004734AC0238432404021261          
S/G/Y/R/B/O NT_004734AL5917212404087603RH710541755.35  1927.801AC023843, AC023843, AL591721
S/G/Y/R/B/O NT_004734AL5917212404087603RH708691755.25    1AC023843, AC023843, AL591721
S/G/Y/R/B/O NT_004734AL5917212404609843RH480101755.25    1AC023843, AC023843, AL591721
S/G/Y/R/B/O NT_004734AL6628892404931423RH710471756.75  1929.501AC023843, AC023843, AL662889
S/G/Y/R/B/O NT_004734AL5921512406629062RH644411755.25  1928.101 AL592151
S/G/Y/R/B/O NT_004734AL5921512406629062RH124801755.25    1 AL592151
S/G/Y/R/B/O NT_004734AL5921512406629062RH703331755.25    1 AL592151
S/G/Y/R/B/O NT_004734AL5921512407108942RH647241755.35    1 AL592151
S/G/Y/R/B/O NT_004734AL5918852407674543WI-5944    1928.201 AC067778, AC080120, AL591885
S/G/Y/R/B/O NT_004734AC0260412408830301          


  NT_004734 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004734AL5904832409498031RH1044721755.25    1AC025342, AC026041, AC025342, AC026041, AJ223321, AL590483
S/G/Y/R/B/O NT_004734AL5904832409498061RH160211755.25    1AC025342, AC026041, AC025342, AC026041, AJ223321, AL590483
S/G/Y/R/B/O NT_004734AC0253422409102141          
S/G/Y/R/B/O NT_004734AL3581772410296213RH493141755.2519454.00  1AL662915, AL358177, AL662915
S/G/Y/R/B/O NT_004734AL6629152410995402          
S/G/Y/R/B/O NT_004734AL3554752411513213          
S/G/Y/R/B/O NT_004734AL6454652412675503RH1034821755.35    1 AL591168, AL645465
S/G/Y/R/B/O NT_004734AL6454652413009643RH260001755.15    1 AC021775, AL591168, AL645465
S/G/Y/R/B/O NT_004734AL6454652413010593RH665541755.15    1 AC021775, AL591168, AL645465
S/G/Y/R/B/O NT_004734AL6454652413012763RH687101755.25    1 AC021775, AL591168, AL645465
S/G/Y/R/B/O NT_004734AL6454652413015143RH507341755.25  1928.101 AC021775, AL645465
S/G/Y/R/B/O NT_004734AL5915942413141702          
S/G/Y/R/B/O NT_004734AC0997572414260273          
S/G/Y/R/B/O NT_004734AL4510072416011343RH752641755.35    1 AL451007
S/G/Y/R/B/O NT_004734AL4510072416012063RH669101755.25    1 AL451007
S/G/Y/R/B/O NT_004734AL4510072416025663RH646031755.25    1 AL451007
S/G/Y/R/B/O NT_004734AL4510072416028953RH711301755.25    1 AL451007
S/G/Y/R/B/O NT_004734AL5897632417542963RH644191755.35  1931.001 AL356606, AL589763
S/G/Y/R/B/O NT_004734AL5897632417651963RH697591755.25    1 AL356606, AL589763
S/G/Y/R/B/O NT_004734AL5897632417963733RH644111755.2519485.001929.501 AL356606, AL589763
S/G/Y/R/B/O NT_004734AL5897632417963733RH178891755.25    1 AL356606, AL589763
S/G/Y/R/B/O NT_004734AL5897632418003403RH695511755.25    1 AL356606, AL589763
S/G/Y/R/B/O NT_004734AL3565122418462761RH1233  19471.00  1AL589763, AL356512, AL356606, AL589763
S/G/Y/R/B/O NT_004734AL3565122418464391RH644961755.15    1AL589763, AL356512, AL356606, AL589763
S/G/Y/R/B/O NT_004734AL3565122419226931RH922091755.25    1AC105911, AC105911, AL356512
S/G/Y/R/B/O NT_004734AL6064832419384613          
S/G/Y/R/B/O NT_004734 - RH921991755.15    0AC092782, AC092806, AC092782, AC092806
S/G/Y/R/B/O NT_004734 - RH38036  19479.00  0