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  Chromosome 1 - RH Maps - Single Contig
 

Chromosome 1 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_032954 NT_004350 NT_022058 NT_004321 NT_004547 NT_021917 NT_028054 NT_032970
NT_032967 NT_021937 NT_004488 NT_022041 NT_004873 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_030571 NT_004782 NT_028053 NT_004538 NT_004511
NT_004852 NT_032963 NT_032971 NT_032972 NT_031724 NT_004386 NT_032978 NT_032977
NT_004424 NT_032976 NT_032965 NT_032973 NT_031689 NT_029223 NT_004641 NT_029865
NT_031737 NT_004636 NT_032948 NT_004464 NT_032953 NT_004483 NT_004302 NT_032960
NT_032956 NT_032974 NT_004902 NT_026943 NT_029231 NT_004658 NT_004686 NT_021979
NT_030565 NT_028050 NT_004308 NT_004623 NT_030567 NT_032957 NT_021977 NT_029860
NT_019273 NT_031697 NT_004754 NT_032961 NT_032975 NT_022052 NT_022071 NT_004434
NT_032962 NT_021907 NT_004441 NT_030577 NT_004858 NT_019291 NT_031708 NT_029226
NT_026945 NT_004982 NT_032952 NT_004668 NT_029874 NT_004487 NT_032958 NT_004599
NT_031716 NT_004671 NT_021909 NT_004416 NT_029862 NT_021905 NT_032947 NT_021877
NT_004612 NT_031718 NT_032950 NT_004525 NT_032955 NT_029863 NT_032951 NT_021953
NT_004861 NT_031696 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433
NT_030561 NT_004836 NT_031685 NT_004771 NT_004734 NT_031700 NT_031719 NT_004536
NT_032964 NT_031732 NT_032966 NT_031730 NT_029870 NT_032969 NT_032968


  NT_029223
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_029223AL080278568474513WI-3682    1177.601 AC027234, AL080278, AL157907, AL354883
S/G/Y/R/B/O NT_029223AL080278568690993RH492961156.5812763.00  1 AC027234
S/G/Y/R/B/O NT_029223AL139219569230313WI-4068    1177.901 AC009278, AC027234, AL139219
S/G/Y/R/B/O NT_029223AL139219569397903RH639241156.99    1 AC009278, AC027234, AL139219
S/G/Y/R/B/O NT_029223AL390243569679243          
S/G/Y/R/B/O NT_029223AL355004570567693AFMA230VH5    1184.301 AC009278, AL355004
S/G/Y/R/B/O NT_029223AL442223570651283          
S/G/Y/R/B/O NT_029223AL359739572409193RH167361153.63    1 AL359739
S/G/Y/R/B/O NT_029223AL663085572860953          
S/G/Y/R/B/O NT_029223AL627090573152363          
S/G/Y/R/B/O NT_029223AL137855573879193RH647181156.58    1 AL137855
S/G/Y/R/B/O NT_029223AL137855574148903D1S476    1177.601 AL137855
S/G/Y/R/B/O NT_029223AL137855574148903RH136161158.9312797.00  1 AL137855
S/G/Y/R/B/O NT_029223AL137855574409553WI-4411    1177.901 AL137855
S/G/Y/R/B/O NT_029223AL109944574998533RH14616  12782.00  1 AL109944
S/G/Y/R/B/O NT_029223AL109944574999043RH782131158.83    1 AL109944
S/G/Y/R/B/O NT_029223AL109944575221473RH986811158.83    1AL391826, AL109944, AL390761, AL391826
S/G/Y/R/B/O NT_029223AL391826576295052RH506831157.54    1 AL139221, AL390761, AL391826
S/G/Y/R/B/O NT_029223AL391826576295052WI-14549    1175.801 AL139221, AL390761, AL391826
S/G/Y/R/B/O NT_029223AL391826576295052RH496181158.83  1188.101 AL139221, AL390761, AL391826
S/G/Y/R/B/O NT_029223AL445193576601403          
S/G/Y/R/B/O NT_029223AL365367577288423          
S/G/Y/R/B/O NT_029223AL357373579358262RH492431161.9512807.00  1AC104464, AC104464, AL357373
S/G/Y/R/B/O NT_029223AC104464579429071          
S/G/Y/R/B/O NT_029223AL109845581165413WI-5588    1199.301AC027052, AL365187, AC027052, AL109845, AL359879, AL365187
S/G/Y/R/B/O NT_029223AL109845581208923RH365711166.48    1AC027052, AL365187, AC027052, AL109845, AL359879, AL365187
S/G/Y/R/B/O NT_029223AL365187582161291RH678681166.58    1AC025008, AC027052, AL035411, AC025008, AC027052, AL035411, AL365187, J04152
S/G/Y/R/B/O NT_029223AL365187582161861RH14008  12823.00  1AC025008, AC027052, AL035411, AC025008, AC027052, AL035411, AL365187, J04152
S/G/Y/R/B/O NT_029223AL365187582161861RH500311166.48    1AC025008, AC027052, AL035411, AC025008, AC027052, AL035411, AL365187, J04152
S/G/Y/R/B/O NT_029223AL365187582161861WI-7569    1174.301AC025008, AC027052, AL035411, AC025008, AC027052, AL035411, AL365187, J04152
S/G/Y/R/B/O NT_029223AL365187582174641RH362051162.05    1AC025008, AC027052, AL035411, AC025008, AC027052, AL035411, AL365187, J04152
S/G/Y/R/B/O NT_029223AL365187582174941RH475741162.12    1AC025008, AC027052, AL035411, AC025008, AC027052, AL035411, AL365187, J04152
S/G/Y/R/B/O NT_029223AC025008581591711          
S/G/Y/R/B/O NT_029223AC027052582459661          
S/G/Y/R/B/O NT_029223AL035411582712863RH808381117.64    2AC025008, AL020995, AC025008, AF056332, AL020995, AL035411
S/G/Y/R/B/O NT_029223AL035411582954503WI-14224    1188.801AC025008, AC025008, AL035411
S/G/Y/R/B/O NT_029223AL035411582954503RH506911151.03    1AC025008, AC025008, AL035411
S/G/Y/R/B/O NT_029223AL035411582983693RH647301162.12    1AC025008, AC025008, AL035411
S/G/Y/R/B/O NT_029223AL450024583355703          
S/G/Y/R/B/O NT_029223AL136985583794873WI-4549    1194.801 AL136985
S/G/Y/R/B/O NT_029223AL136985583989293RH38097  12823.00  1 AL136985
S/G/Y/R/B/O NT_029223AL136985584215003RH684041165.46    1 AL136985, J04111
S/G/Y/R/B/O NT_029223AL136985584236173RH685241166.58    1 AL136985, J04111
S/G/Y/R/B/O NT_029223AL136985584565113RH1027841165.46    1 AL136985
S/G/Y/R/B/O NT_029223AL136985584611833D1S220    1199.301 AL136985
S/G/Y/R/B/O NT_029223AL136985584611833RH829  12828.00  1 AL136985
S/G/Y/R/B/O NT_029223AL136985584611833RH132901166.69    1 AL136985
S/G/Y/R/B/O NT_029223AL606762585037813RH14630  12828.00  1AC080177, AC080177, AL606762
S/G/Y/R/B/O NT_029223AL606762585037813RH498901166.69    1AC080177, AC080177, AL606762
S/G/Y/R/B/O NT_029223AL606762585037813SGC31372    1199.301AC080177, AC080177, AL606762


  NT_029223 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_029223AC105277585177331          
S/G/Y/R/B/O NT_029223AL713859585638701RH364801166.58    1 AL713859
S/G/Y/R/B/O NT_029223AL713859585638701RH766521166.69    1 AL713859
S/G/Y/R/B/O NT_029223AL713859585844961RH642651166.58    1 AL713859
S/G/Y/R/B/O NT_029223AL713859585844961WI-18101    1199.301 AL713859
S/G/Y/R/B/O NT_029223AL390234587642203RH492051167.25    1 AC013610
S/G/Y/R/B/O NT_029223AC069129587855091          
S/G/Y/R/B/O NT_029223AC025793588057771          
S/G/Y/R/B/O NT_029223AC093424588253901          
S/G/Y/R/B/O NT_029223AC016336589753891          
S/G/Y/R/B/O NT_029223AL596322589772443          
S/G/Y/R/B/O NT_029223AC093425589961283RH493461163.6512823.00  1AC016336, AC025793, AL596322, AC016336, AC025793, AC093425, AL596322
S/G/Y/R/B/O NT_029223AL592431591732063          
S/G/Y/R/B/O NT_029223AC080177592311281          
S/G/Y/R/B/O NT_029223 - RH805151161.64    0  
S/G/Y/R/B/O NT_029223 - WI-15470    1181.001AL353898, AL353898