Chromosome 1 - RH Maps - Single Contig

Chromosome 1 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_032954	NT_004350	NT_022058	NT_004321	NT_004547	NT_021917	NT_028054	NT_032970
NT_032967	NT_021937	NT_004488	NT_022041	NT_004873	NT_030584	NT_004572	NT_029218
NT_004610	NT_032979	NT_004391	NT_030571	NT_004782	NT_028053	NT_004538	NT_004511
NT_004852	NT_032963	NT_032971	NT_032972	NT_031724	NT_004386	NT_032978	NT_032977
NT_004424	NT_032976	NT_032965	NT_032973	NT_031689	NT_029223	NT_004641	NT_029865
NT_031737	NT_004636	NT_032948	NT_004464	NT_032953	NT_004483	NT_004302	NT_032960
NT_032956	NT_032974	NT_004902	NT_026943	NT_029231	NT_004658	NT_004686	NT_021979
NT_030565	NT_028050	NT_004308	NT_004623	NT_030567	NT_032957	NT_021977	NT_029860
NT_019273	NT_031697	NT_004754	NT_032961	NT_032975	NT_022052	NT_022071	NT_004434
NT_032962	NT_021907	NT_004441	NT_030577	NT_004858	NT_019291	NT_031708	NT_029226
NT_026945	NT_004982	NT_032952	NT_004668	NT_029874	NT_004487	NT_032958	NT_004599
NT_031716	NT_004671	NT_021909	NT_004416	NT_029862	NT_021905	NT_032947	NT_021877
NT_004612	NT_031718	NT_032950	NT_004525	NT_032955	NT_029863	NT_032951	NT_021953
NT_004861	NT_031696	NT_004908	NT_004559	NT_031728	NT_021973	NT_004753	NT_004433
NT_030561	NT_004836	NT_031685	NT_004771	NT_004734	NT_031700	NT_031719	NT_004536
NT_032964	NT_031732	NT_032966	NT_031730	NT_029870	NT_032969	NT_032968

NT_004754

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_004754	AL445231	118275919	3	SGC33573					1	438.10	1		AL445231
S/G/Y/R/B/O	NT_004754	AL445231	118275919	3	RH16595	1	388.17					1		AL445231
S/G/Y/R/B/O	NT_004754	AL445231	118276719	3	RH104519	1	390.60					1		AL445231
S/G/Y/R/B/O	NT_004754	AL445231	118277162	3	RH25951	1	392.21					1		AL445231
S/G/Y/R/B/O	NT_004754	AL445231	118277162	3	RH64617	1	390.60					1		AL445231
S/G/Y/R/B/O	NT_004754	AL445231	118278519	3	RH91725	1	390.60					1		AL445231
S/G/Y/R/B/O	NT_004754	AL445231	118324528	3	RH64469	1	393.97			1	454.20	1		AL445231
S/G/Y/R/B/O	NT_004754	AL139248	118351275	3
S/G/Y/R/B/O	NT_004754	AL391476	118390836	3	RH33749			1	5469.00			1		AL391476
S/G/Y/R/B/O	NT_004754	AL391476	118395346	3	RH36149	1	390.50					1		AL391476
S/G/Y/R/B/O	NT_004754	AL391476	118430056	3	RH49878	1	390.50			1	437.70	1		AL391476
S/G/Y/R/B/O	NT_004754	AL391476	118430141	3	RH12350	1	390.50					1		AL391476
S/G/Y/R/B/O	NT_004754	AL391476	118430181	3	RH44726	1	390.60					1		AL391476
S/G/Y/R/B/O	NT_004754	AL391476	118431056	3	RH12023	1	390.50					1		AL391476
S/G/Y/R/B/O	NT_004754	AL391476	118431960	3	RH50823	1	396.46					1		AL391476
S/G/Y/R/B/O	NT_004754	AL391476	118431960	3	WI-18059					1	491.20	1		AL391476
S/G/Y/R/B/O	NT_004754	AL391476	118461615	3	RH29943			1	5501.00			1		AL391476
S/G/Y/R/B/O	NT_004754	AL365264	118522867	3
S/G/Y/R/B/O	NT_004754	AL360298	118539432	3
S/G/Y/R/B/O	NT_004754	AC053494	118647167	1
S/G/Y/R/B/O	NT_004754	AL358072	118651837	2
S/G/Y/R/B/O	NT_004754	AL157902	118811209	3	RH68338	1	390.50					1	AL358072,	AC022671, AL157902, AL358072
S/G/Y/R/B/O	NT_004754	AL157902	118812773	3	RH64796	1	390.60	1	5479.00			1		AC022671, AL157902
S/G/Y/R/B/O	NT_004754	AL157902	118813861	3	RH64389	1	390.40			1	438.20	1		AC022671, AL157902
S/G/Y/R/B/O	NT_004754	AL157902	118816265	3	RH50897	1	390.70			1	438.20	1		AC022671, AL157902
S/G/Y/R/B/O	NT_004754	AL365331	118894579	3	RH16230	1	390.70					1		AC012347, AL365331
S/G/Y/R/B/O	NT_004754	AL365331	118894648	3	RH49740	1	388.68			1	440.10	1		AC012347, AL365331
S/G/Y/R/B/O	NT_004754	AL365331	118909800	3	RH2174	1	394.47			1	445.80	1		AC084875, AL365331
S/G/Y/R/B/O	NT_004754	AL365331	118909800	3	RH408			1	5493.00			1		AC084875, AL365331
S/G/Y/R/B/O	NT_004754	AL365331	118915663	3	RH50243	1	387.54			1	444.20	1		AC012347, AC084875, AL365331
S/G/Y/R/B/O	NT_004754	AL390877	118946856	3
S/G/Y/R/B/O	NT_004754	AL122007	119147934	3	RH49929	1	387.13			1	439.40	1		AL122007, AL365320
S/G/Y/R/B/O	NT_004754	AL122007	119157836	3	RH69672	1	390.50					1		AL122007, AL365320
S/G/Y/R/B/O	NT_004754	AL121993	119168438	3	RH64749	1	390.70					1		AL121993
S/G/Y/R/B/O	NT_004754	AL121993	119181872	3	RH50611	1	388.48			1	451.50	1		AL121993
S/G/Y/R/B/O	NT_004754	AL121993	119201116	3	RH36267	1	390.70					1		AL121993
S/G/Y/R/B/O	NT_004754	AL139345	119262317	3
S/G/Y/R/B/O	NT_004754	AL513191	119320180	3
S/G/Y/R/B/O	NT_004754	AL391557	119489381	3	AFM037XF6					1	453.00	1		AL391557
S/G/Y/R/B/O	NT_004754	AL391557	119508991	3	RH49247	1	390.70					1		AL391557
S/G/Y/R/B/O	NT_004754	AL512823	119604525	3
S/G/Y/R/B/O	NT_004754	AL122006	119652037	3	WI-3524					1	450.30	1		AL122006
S/G/Y/R/B/O	NT_004754	AL390117	119780667	3
S/G/Y/R/B/O	NT_004754	AL606843	119879827	3
S/G/Y/R/B/O	NT_004754	AL139148	119973855	3
S/G/Y/R/B/O	NT_004754	AC027610	120064469	1
S/G/Y/R/B/O	NT_004754		-		RH69083	1	387.69					0	AL135798,	AL135798
S/G/Y/R/B/O	NT_004754		-		WI-4131					1	442.50	0