Chromosome 10 - RH Maps - Single Contig

Chromosome 10 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_024115	NT_024081	NT_033983	NT_033894	NT_033916	NT_008705	NT_033921	NT_033986
NT_033892	NT_033226	NT_033223	NT_033227	NT_033912	NT_033982	NT_033988	NT_033896
NT_024133	NT_033987	NT_033985	NT_031847	NT_030066	NT_030772	NT_033228	NT_008646
NT_017696	NT_031860	NT_033898	NT_033920	NT_008748	NT_033222	NT_033990	NT_024085
NT_033984	NT_008797	NT_033897	NT_008583	NT_033220	NT_033891	NT_033895	NT_033917
NT_033989	NT_033918	NT_033919	NT_033893	NT_024037	NT_030075	NT_033890	NT_024064
NT_030070	NT_008769	NT_033229	NT_030059	NT_008818	NT_033221	NT_031855	NT_031856
NT_008902	NT_030764	NT_027097	NT_024086	NT_025835	NT_033224	NT_033225	NT_024040
NT_017795	NT_028298

NT_033983

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_033983	AC053504	5516566	1
S/G/Y/R/B/O	NT_033983	AL365356	5563980	3	RH46010	10	52.22					1		AL365356
S/G/Y/R/B/O	NT_033983	AL365356	5612092	3	RH38079			10	170.00	10	50.40	1		AL365356
S/G/Y/R/B/O	NT_033983	AL365356	5623334	3	RH40199	10	52.32					1		AL365356
S/G/Y/R/B/O	NT_033983	AL365356	5673346	3	RH92215	10	52.22					1	AC053504,	AC053504, AL365356
S/G/Y/R/B/O	NT_033983	AL365356	5674934	3	RH98745	10	52.22					1	AC053504,	AC053504, AL365356
S/G/Y/R/B/O	NT_033983	AL365356	5686514	3	RH40207	10	52.22					1	AC053504, AL596094,	AC053504, AL596094
S/G/Y/R/B/O	NT_033983	AL596094	5688528	3	RH40258	10	52.22					1	AC053504,	AC053504
S/G/Y/R/B/O	NT_033983	AL596094	5690322	3	RH80738	10	48.14					2	AC053504, AL365362,	AC021592, AC053504, AL365362, AL596094
S/G/Y/R/B/O	NT_033983	AL596094	5692579	3	RH69293	10	52.32					1	AC053504,	AC053504, AL596094
S/G/Y/R/B/O	NT_033983	AL596094	5698453	3	RH11041	10	52.32					1	AC053504,	AC053504, AL596094
S/G/Y/R/B/O	NT_033983	AL596094	5703693	3	RH91167	10	361.19					5	AC026349, AC053504, AC090229, AJ312687, AL590502, AP002508,	AC026349, AC053504, AC090229, AJ312687, AL590502, AL596094, AP002508
S/G/Y/R/B/O	NT_033983	AL137186	5803196	3	RH92268	10	52.22					1	AC053504,	AC053504, AL137186
S/G/Y/R/B/O	NT_033983	AL137186	5862463	3	RH10634	10	52.22					1	AC053504,	AC053504, AL137186
S/G/Y/R/B/O	NT_033983	AL137186	5868580	3	RH1980			10	283.00			1	AC053504,	AC053504, AL137186
S/G/Y/R/B/O	NT_033983	AL137186	5874004	3	RH76131	10	52.32					2		AL137186, AL137186
S/G/Y/R/B/O	NT_033983	AL137186	5877459	3	RH69914	10	54.16					1		AL137186
S/G/Y/R/B/O	NT_033983	AL137186	5877488	3	RH76131	10	52.32					2		AL137186, AL137186
S/G/Y/R/B/O	NT_033983	AL137186	5877576	3	RH40294	10	54.16					1		AL137186
S/G/Y/R/B/O	NT_033983	AL137186	5937721	3	RH75942	10	49.90					1		AL137186
S/G/Y/R/B/O	NT_033983	AL137186	5937744	3	RH70807	10	54.16					1		AL137186
S/G/Y/R/B/O	NT_033983	AL137186	5949336	3	RH40306	10	54.16					1		AL137186
S/G/Y/R/B/O	NT_033983	AL157395	6040123	3	RH40153	10	56.30					1		AL157395
S/G/Y/R/B/O	NT_033983	AL157395	6041167	3	RH67142	10	58.39					1		AL157395
S/G/Y/R/B/O	NT_033983	AL157395	6041552	3	RH51142	10	54.16			10	56.10	1		AL157395
S/G/Y/R/B/O	NT_033983	AL157395	6065043	3	RH51039	10	54.16			10	56.00	1		AL157395
S/G/Y/R/B/O	NT_033983	AL157395	6095544	3	RH51334	10	56.30	10	223.00	10	61.50	1		AL157395
S/G/Y/R/B/O	NT_033983	AL157395	6143398	3	RH45944	10	56.30					1		AL157395
S/G/Y/R/B/O	NT_033983	AL359960	6158033	3	RH68277	10	58.83					1		AL359960
S/G/Y/R/B/O	NT_033983	AL359960	6160393	3	RH51017	10	49.80			10	54.60	1		AL359960
S/G/Y/R/B/O	NT_033983	AL137145	6235294	3	RH80153	19	32.95					2	AC005523,	AC005523
S/G/Y/R/B/O	NT_033983	AL137145	6352242	3	RH74939	10	56.30					1		AL137145, AL353893
S/G/Y/R/B/O	NT_033983	AL137145	6352711	3	RH37909			10	236.00			1		AL137145, AL353893
S/G/Y/R/B/O	NT_033983	AL137145	6352878	3	RH51459	10	56.10	10	240.00	10	61.30	1		AL137145, AL353893
S/G/Y/R/B/O	NT_033983	AL137145	6352908	3	RH68983	10	54.16					1		AL137145, AL353893
S/G/Y/R/B/O	NT_033983	AL137145	6366542	3	RH51343	10	58.22	10	309.00	10	61.90	1		AL137145, AL353893
S/G/Y/R/B/O	NT_033983	AL137145	6366686	3	RH40252	10	56.30					1		AL137145, AL353893
S/G/Y/R/B/O	NT_033983	AL158043	6458732	3	WI-5084					10	55.50	1		AC010956, AL158043
S/G/Y/R/B/O	NT_033983	AL158043	6509019	3	RH98848	10	56.20					1		AC010956, AL158043
S/G/Y/R/B/O	NT_033983	AL158043	6510158	3	RH51358	10	56.20			10	61.60	1		AC010956, AL158043
S/G/Y/R/B/O	NT_033983	AL158043	6510165	3	RH14281			10	285.00			1		AC010956, AL158043
S/G/Y/R/B/O	NT_033983	AL158043	6511527	3	RH38252			10	280.00			1		AC010956, AL158043
S/G/Y/R/B/O	NT_033983	AL158210	6604984	3	D10S189					10	58.70	1		AL158210
S/G/Y/R/B/O	NT_033983	AL158210	6604984	3	RH49001	10	56.20					1		AL158210
S/G/Y/R/B/O	NT_033983	AL158210	6605135	3	RH195			10	252.00			1		AL158210
S/G/Y/R/B/O	NT_033983	AL158210	6665317	3	RH91961	10	56.20					1		AC015686, AL158210
S/G/Y/R/B/O	NT_033983	AL590637	6678065	3
S/G/Y/R/B/O	NT_033983	AL392086	6838883	3	AFM323TB9					10	61.60	1		AL358945, AL392086
S/G/Y/R/B/O	NT_033983	AL357147	6936585	3
S/G/Y/R/B/O	NT_033983	AL590095	7078716	3	RH31123			10	261.00	10	61.60	1		AC073378

NT_033983 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_033983	AL590095	7083831	3	RH17286	10	56.20					1		AC073378, AL590095
S/G/Y/R/B/O	NT_033983	AL590095	7083850	3	RH102722	10	56.20					1		AC073378, AL590095
S/G/Y/R/B/O	NT_033983	AL590095	7087378	3	RH93166	10	56.20					1		AC073378, AL590095
S/G/Y/R/B/O	NT_033983	AL138771	7144346	3
S/G/Y/R/B/O	NT_033983	AL158046	7194718	3	RH51439	10	60.25			10	62.10	1		AC073378, AL158046
S/G/Y/R/B/O	NT_033983	AL158046	7264592	3	RH74975	10	48.66					1		AL158046
S/G/Y/R/B/O	NT_033983	AL158046	7266773	3	RH51076	10	57.81	10	270.00	10	62.00	1		AL158046
S/G/Y/R/B/O	NT_033983	AL139125	7292557	3
S/G/Y/R/B/O	NT_033983	AL445070	7416894	3
S/G/Y/R/B/O	NT_033983	AL355374	7484473	3	RH40203	10	59.26					1		AL355374
S/G/Y/R/B/O	NT_033983	AL158044	7628400	3	WI-17151					10	55.00	1		AL158044, AL391687
S/G/Y/R/B/O	NT_033983	AL158044	7628400	3	RH51230	10	47.87					1		AL158044, AL391687
S/G/Y/R/B/O	NT_033983	AL158044	7674313	3	RH44110	10	58.02					1		AL158044, AL391687
S/G/Y/R/B/O	NT_033983	AL158044	7676062	3	RH51408	10	58.42			10	64.60	1		AL158044, AL391687
S/G/Y/R/B/O	NT_033983	AL158044	7676175	3	RH67488	10	60.15					1		AL158044, AL391687
S/G/Y/R/B/O	NT_033983	AL353754	7784894	3	RH44374	10	48.45					1		AL353754, AL391687
S/G/Y/R/B/O	NT_033983	AL159172	7889817	3	RH69727	10	71.22					1		AC058800, AL159172
S/G/Y/R/B/O	NT_033983	AL159172	7889844	3	RH51354	10	71.11	10	346.00	10	69.90	1		AC058800, AL159172
S/G/Y/R/B/O	NT_033983	AL390294	7940692	3	RH103586	10	71.22					1		AC058800, AL390294
S/G/Y/R/B/O	NT_033983	AL390294	7977432	3	RH102063	10	71.35					1		AC058800, AL390294
S/G/Y/R/B/O	NT_033983	AL390294	7999097	3	RH1873			10	454.00			1		AL390294
S/G/Y/R/B/O	NT_033983	AL390294	7999396	3	RH16701	10	60.51					1		AC037470, AC058800, AL390294
S/G/Y/R/B/O	NT_033983	AL390294	7999719	3	RH78856	10	71.55					1		AC058800, AL390294
S/G/Y/R/B/O	NT_033983	AL390294	7999926	3	RH17471	10	60.51					1		AL390294
S/G/Y/R/B/O	NT_033983	AL390294	7999931	3	RH51012	10	71.94	10	412.00	10	63.10	1		AC058800, AL390294
S/G/Y/R/B/O	NT_033983	AL357712	8094956	3	RH51516	10	64.31	10	412.00	10	69.80	1		AC037470
S/G/Y/R/B/O	NT_033983	AL390835	8189631	3
S/G/Y/R/B/O	NT_033983	AL356784	8253139	3
S/G/Y/R/B/O	NT_033983	AC025946	8304485	3	CHLC.GATA84C03					10	66.20	1		AC025946
S/G/Y/R/B/O	NT_033983	AC025946	8337185	3	WI-5574					10	68.00	1		AC025946
S/G/Y/R/B/O	NT_033983	AC025946	8388594	3	RH65566	10	69.01					1		AC025946
S/G/Y/R/B/O	NT_033983	AL139403	8505633	3	WI-4224					10	74.30	1		AL139403
S/G/Y/R/B/O	NT_033983	AL355333	8571153	3
S/G/Y/R/B/O	NT_033983		-		RH102818	10	66.77					1	AL138773,	AL138773, AL139127
S/G/Y/R/B/O	NT_033983		-		RH1164			10	382.00			0
S/G/Y/R/B/O	NT_033983		-		SGC30690					10	63.20	0	AL136452,	AL136452
S/G/Y/R/B/O	NT_033983		-		RH16992	10	52.32					0
S/G/Y/R/B/O	NT_033983		-		RH1995			10	378.00			1	AC012544, AL138774,	AC012544, AL138774
S/G/Y/R/B/O	NT_033983		-		AFM154YB4					10	65.00	1	AL136453,	AL136453
S/G/Y/R/B/O	NT_033983		-		RH25804	10	52.32					0
S/G/Y/R/B/O	NT_033983		-		RH31126			10	378.00			1	AC069025,	AC069025, AL161933
S/G/Y/R/B/O	NT_033983		-		RH26057	10	68.81					2
S/G/Y/R/B/O	NT_033983		-		RH37780			10	374.00			1	AC012544, AL138774,	AC012544, AL138774
S/G/Y/R/B/O	NT_033983		-		RH28381	10	49.39					0	AC053504, AL596094,	AC053504, AL596094
S/G/Y/R/B/O	NT_033983		-		RH40287	10	52.32					0
S/G/Y/R/B/O	NT_033983		-		RH44139	10	49.60					0	AL157395,	AL157395
S/G/Y/R/B/O	NT_033983		-		RH44646	10	49.67					0	AC053504,	AC053504
S/G/Y/R/B/O	NT_033983		-		RH51006	10	52.32					0
S/G/Y/R/B/O	NT_033983		-		RH51063	10	48.90					0
S/G/Y/R/B/O	NT_033983		-		RH67523	10	52.22					0

NT_033983 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_033983		-		RH69773	10	58.22					0	AL158044,	AL158044, AL391687
S/G/Y/R/B/O	NT_033983		-		RH78717	10	56.30					0