Chromosome 10 - RH Maps - Single Contig

Chromosome 10 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_024115	NT_024081	NT_033983	NT_033894	NT_033916	NT_008705	NT_033921	NT_033986
NT_033892	NT_033226	NT_033223	NT_033227	NT_033912	NT_033982	NT_033988	NT_033896
NT_024133	NT_033987	NT_033985	NT_031847	NT_030066	NT_030772	NT_033228	NT_008646
NT_017696	NT_031860	NT_033898	NT_033920	NT_008748	NT_033222	NT_033990	NT_024085
NT_033984	NT_008797	NT_033897	NT_008583	NT_033220	NT_033891	NT_033895	NT_033917
NT_033989	NT_033918	NT_033919	NT_033893	NT_024037	NT_030075	NT_033890	NT_024064
NT_030070	NT_008769	NT_033229	NT_030059	NT_008818	NT_033221	NT_031855	NT_031856
NT_008902	NT_030764	NT_027097	NT_024086	NT_025835	NT_033224	NT_033225	NT_024040
NT_017795	NT_028298

NT_033982

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_033982	AL358234	32709080	2
S/G/Y/R/B/O	NT_033982	AL161936	32820312	3	WI-5715					10	185.30	1	AL358234,	AC005876, AL161936, AL358234, AL445311
S/G/Y/R/B/O	NT_033982	AL161936	32851991	3	WI-5258					10	203.80	1	AL358234,	AC005876, AL161936, AL358234, AL445311
S/G/Y/R/B/O	NT_033982	AL161936	32886065	3	RH1954			10	1445.00			1	AL358234,	AC005876, AL161936, AL358234, AL390996, AL445311
S/G/Y/R/B/O	NT_033982	AL161936	32886069	3	RH8754			10	1441.00			1	AL358234,	AC005876, AL161936, AL358234, AL390996, AL445311
S/G/Y/R/B/O	NT_033982	AL161936	32888041	3	RH40208	10	191.68					1	AL358234,	AC005876, AL161936, AL358234, AL390996, AL445311
S/G/Y/R/B/O	NT_033982	AL161936	32921117	3	AFMC029XE9					10	203.80	1		AL390996
S/G/Y/R/B/O	NT_033982	AL161936	32947659	3	RH51307	10	182.96			10	203.80	1		AJ277488, AL161936
S/G/Y/R/B/O	NT_033982	AL161936	32947749	3	RH44124	10	184.35					1		AJ277488, AL161936
S/G/Y/R/B/O	NT_033982	AL355376	33054866	3	RH101949	10	182.96					1		AL355376, AL365354
S/G/Y/R/B/O	NT_033982	AL390248	33081736	3
S/G/Y/R/B/O	NT_033982	AL359995	33205534	3
S/G/Y/R/B/O	NT_033982	AL355858	33322758	3	RH49523	10	182.89	10	1517.00			1		AL355814, AL355858
S/G/Y/R/B/O	NT_033982	AL357118	33416446	3
S/G/Y/R/B/O	NT_033982	AL365180	33523835	3	RH31079			10	1508.00			2	AC005878,	AC005878, AL365180, AL512431
S/G/Y/R/B/O	NT_033982	AL158167	33686082	3	RH68469	10	188.55					1		AL157390, AL158167
S/G/Y/R/B/O	NT_033982	AL158167	33687325	3	RH98351	10	180.46					1		AL157390, AL158167
S/G/Y/R/B/O	NT_033982	AL158167	33701269	3	RH51372	10	180.46			10	187.50	1		AL157390, AL158167
S/G/Y/R/B/O	NT_033982	AL158167	33701495	3	RH45927	10	182.79					1		AL157390, AL158167
S/G/Y/R/B/O	NT_033982	AL158167	33705096	3	RH35095			10	1477.00			1		AL157390, AL158167
S/G/Y/R/B/O	NT_033982	AL158167	33722749	3	RH69678	10	188.25					1		AL157390, AL158167
S/G/Y/R/B/O	NT_033982	AL158167	33722774	3	RH51562	10	180.46			10	189.20	1		AL157390, AL158167
S/G/Y/R/B/O	NT_033982	AL158167	33723341	3	RH9806	10	188.25					1		AL157390, AL158167
S/G/Y/R/B/O	NT_033982	AL158167	33724435	3	RH44745	10	178.86					1		AL157390, AL158167
S/G/Y/R/B/O	NT_033982	AL158167	33725497	3	RH93747	10	180.46					1		AL157390, AL158167
S/G/Y/R/B/O	NT_033982	AL158167	33726222	3	RH51324	10	182.79			10	201.80	1		AL158167
S/G/Y/R/B/O	NT_033982	AL158167	33726232	3	RH25448	10	190.98					1		AL157390, AL158167
S/G/Y/R/B/O	NT_033982	AL158167	33728319	3	RH77761	10	188.75					1		AL157390, AL158167
S/G/Y/R/B/O	NT_033982	AL158167	33729254	3	RH51532	10	182.38			10	201.70	1		AL158167
S/G/Y/R/B/O	NT_033982	AL158167	33729293	3	RH40254	10	188.55					2	AL451107,	AL158167, AL451107
S/G/Y/R/B/O	NT_033982	AL158167	33734050	3	RH51559	10	182.07			10	187.60	1		AL157390, AL158167
S/G/Y/R/B/O	NT_033982	AL158167	33748693	3	RH68411	10	188.25					2		AL157390, AL158167
S/G/Y/R/B/O	NT_033982	AL158167	33749007	3	RH27010	10	557.00					1		AL157390
S/G/Y/R/B/O	NT_033982	AL158167	33750617	3	RH93948	10	188.65					2	AL451107,	AL158167, AL451107
S/G/Y/R/B/O	NT_033982	AL158167	33752782	3	RH51260	10	182.07			10	201.80	1		AL157390, AL158167
S/G/Y/R/B/O	NT_033982	AL158167	33752901	3	RH102220	10	182.79					2	AL451107,	AL157390, AL158167, AL451107
S/G/Y/R/B/O	NT_033982	AL160060	33872848	3	RH41980	10	183.94					1		AL160060, AL390024, AL591134
S/G/Y/R/B/O	NT_033982	AL160060	33890028	3	RH102520	10	180.46					1		AL160060, AL390024, AL591134
S/G/Y/R/B/O	NT_033982	AL159170	33978393	3	RH49524	10	180.46	10	1491.00			1		AL159170, AL390024
S/G/Y/R/B/O	NT_033982	AL353093	34096126	3
S/G/Y/R/B/O	NT_033982	AL158036	34278179	3	RH17140	10	184.30					1		AL158036, AL360090, AL591103
S/G/Y/R/B/O	NT_033982	AL158036	34278225	3	RH40262	10	188.45					1		AL158036, AL360090, AL591103
S/G/Y/R/B/O	NT_033982	AL158036	34279868	3	RH92192	10	181.97					1		AL158036, AL360090, AL591103
S/G/Y/R/B/O	NT_033982	AL158036	34280509	3	RH51054	10	184.30			10	194.80	1		AL158036, AL360090, AL591103
S/G/Y/R/B/O	NT_033982	AL158036	34282236	3	RH92028	10	182.48					1		AL158036, AL360090, AL591103
S/G/Y/R/B/O	NT_033982	AL158036	34293238	3	RH75627	10	184.35					1		AL158036, AL360090
S/G/Y/R/B/O	NT_033982	AL360172	34369232	3	RH40256	10	188.45					1		AL360172, AL591103
S/G/Y/R/B/O	NT_033982	AL360172	34472042	3	CHLC.GATA73E11					10	191.60	1	AL591705,	AC072024, AL360172, AL591103, AL591705
S/G/Y/R/B/O	NT_033982	AL360172	34479812	3	AFM309YB9					10	187.70	1	AL591705,	AC072024, AL360172, AL390297, AL591103, AL591705
S/G/Y/R/B/O	NT_033982	AL353796	34549683	3	RH15067	10	188.45					1		AL353796

NT_033982 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_033982	AL353796	34549683	3	RH234			10	1544.00			1		AL353796
S/G/Y/R/B/O	NT_033982	AL353796	34578250	3	RH40248	10	184.30					1		AC072024, AL353796, AL355542, AL391279
S/G/Y/R/B/O	NT_033982	AL353796	34578450	3	RH93834	10	184.30					1		AC072024, AL353796, AL355542, AL391279
S/G/Y/R/B/O	NT_033982	AL353796	34578681	3	RH44699	10	182.48					1		AC072024, AL353796, AL355542, AL391279
S/G/Y/R/B/O	NT_033982	AL353796	34578773	3	RH40276	10	188.55					1		AC072024, AL353796, AL355542, AL391279
S/G/Y/R/B/O	NT_033982	AL161651	34704411	3	RH51471	10	182.58			10	194.80	1		AL158037, AL161651, AL355542, AL391279
S/G/Y/R/B/O	NT_033982	AL161651	34726151	3	RH51041	10	181.97	10	1540.00	10	189.90	1		AL158037, AL161651, AL391279
S/G/Y/R/B/O	NT_033982	AL161651	34793120	3	D10S1674					10	194.80	1	AL590068,	AL161651, AL590068, AL591663
S/G/Y/R/B/O	NT_033982	AL590068	34794355	3
S/G/Y/R/B/O	NT_033982	AL451107	34952646	3	WI-4158					10	191.60	1		AL451107
S/G/Y/R/B/O	NT_033982	AL451107	34962243	3	RH102220	10	182.79					2	AL158167,	AL157390, AL158167, AL451107
S/G/Y/R/B/O	NT_033982	AL451107	34964809	3	RH93948	10	188.65					2	AL158167,	AL158167, AL451107
S/G/Y/R/B/O	NT_033982	AL451107	34966473	3	RH68411	10	188.25					2	AL158167,	AL157390, AL158167
S/G/Y/R/B/O	NT_033982	AL451107	34976208	3	RH40254	10	188.55					2	AL158167,	AL158167, AL451107
S/G/Y/R/B/O	NT_033982	AL359532	35110271	2	RH98850	10	184.35					1		AL359532
S/G/Y/R/B/O	NT_033982	AC025341	35209435	1
S/G/Y/R/B/O	NT_033982	AL591707	35210704	3
S/G/Y/R/B/O	NT_033982	AL596113	35214698	3
S/G/Y/R/B/O	NT_033982	AL359546	35293535	3	RH92077	10	182.28					1	AC025341,	AC025341, AL359546, AL365497
S/G/Y/R/B/O	NT_033982	AL359546	35403704	3	RH47832	10	182.38					1		AL359546, AL365497
S/G/Y/R/B/O	NT_033982	AL356258	35453130	3
S/G/Y/R/B/O	NT_033982	AL117340	35589811	3	RH93105	10	182.17					1		AL117340, AL591123
S/G/Y/R/B/O	NT_033982	AL117340	35623685	3	RH92798	10	182.79					1		AL117340, AL591123
S/G/Y/R/B/O	NT_033982	AL117340	35630686	3	RH75212	10	195.14					1		AF225898, AL117340, AL591123
S/G/Y/R/B/O	NT_033982	AL117340	35656456	3	RH38619			10	1659.00			1		AF225898, AL117340
S/G/Y/R/B/O	NT_033982	AL117340	35656462	3	RH1155			10	1578.00			1		AF225898, AL117340
S/G/Y/R/B/O	NT_033982	AL158080	35723595	3	RH1084			10	1570.00			1		AC005877, AF225898, AL158080
S/G/Y/R/B/O	NT_033982	AL158080	35756509	3	RH102061	10	182.79					1		AC005877, AF225898, AL158080
S/G/Y/R/B/O	NT_033982	AL355148	35762261	3
S/G/Y/R/B/O	NT_033982	AL161935	35787773	3	RH68664	10	184.41					1		AC005877, AF225898, AL161935, AL359829
S/G/Y/R/B/O	NT_033982	AL161935	35792649	3	RH32207			10	1582.00			1		AC005877, AF225898
S/G/Y/R/B/O	NT_033982	AL161935	35928004	3	AFMA197WF5					10	212.30	1		AL161935, AL365257
S/G/Y/R/B/O	NT_033982	AL353769	36012910	3	WI-3046					10	185.00	1		AL353769, AL365257, AL445436
S/G/Y/R/B/O	NT_033982	AL390715	36083918	1	RH44894	10	184.35					1		AL390715
S/G/Y/R/B/O	NT_033982	AL591705	36235968	1
S/G/Y/R/B/O	NT_033982	AL365319	36244038	1
S/G/Y/R/B/O	NT_033982	AL161932	36282757	3	RH11000	10	186.02					2	AC006101, AL365319,	AC006101, AL161932, AL365319
S/G/Y/R/B/O	NT_033982	AL161932	36282849	3	RH16965	10	191.70					2	AC006101, AL365319,	AC006101, AL161932, AL365319
S/G/Y/R/B/O	NT_033982	AL161932	36283119	3	RH67470	10	189.45					2	AC006101, AL365319,	AC006101, AL161932, AL365319
S/G/Y/R/B/O	NT_033982	AL161932	36283228	3	RH51574	10	186.02			10	215.40	2	AC006101,	AC006101, AL161932
S/G/Y/R/B/O	NT_033982	AL161932	36283333	3	RH8907			10	1600.00			2	AC006101,	AC006101, AL161932
S/G/Y/R/B/O	NT_033982		-		RH28294	10	183.90					1	AL158834, AL591709,	AL158834, AL591709
S/G/Y/R/B/O	NT_033982		-		RH33822			10	1593.00			1	AC006101,	AC006101
S/G/Y/R/B/O	NT_033982		-		AFM109YG3					10	186.80	1	AL354750,	AC068741, AL354750, AL355540
S/G/Y/R/B/O	NT_033982		-		RH40144	10	187.35					1	AL138920, AL445484, AL591111,	AL138920, AL445484, AL591111
S/G/Y/R/B/O	NT_033982		-		RH45322	10	183.90					1	AL391839,	AL391839, AL591112
S/G/Y/R/B/O	NT_033982		-		RH45612	10	183.94					1	AL121748,	AL121748
S/G/Y/R/B/O	NT_033982		-		RH48447	10	183.63					1	AL160409,	AC025823, AL160409, AL591464, U82210
S/G/Y/R/B/O	NT_033982		-		RH51151	10	183.69					1	AC006101,	AC006101
S/G/Y/R/B/O	NT_033982		-		RH51371	10	183.31			10	194.80	0

NT_033982 (cont)

Links	Contig	Chr Start	STS Marker	GM Chr	GM99 GB4	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_033982	-	RH67109	10	191.19			1	AL160291, AL162272,	AL160291, AL162272
S/G/Y/R/B/O	NT_033982	-	D10S588			10	199.30	1	AC020985, AL355501,	AC020985, AL355501
S/G/Y/R/B/O	NT_033982	-	RH75113	10	184.46			0		More than 15
S/G/Y/R/B/O	NT_033982	-	SGC33447			10	200.40	1	AL390866,	AL390866
S/G/Y/R/B/O	NT_033982	-	RH91394	10	182.07			0
S/G/Y/R/B/O	NT_033982	-	WI-18023			10	200.60	2	AL355372, AL591106,	AL355372, AL591106
S/G/Y/R/B/O	NT_033982	-	RH92912	10	191.37			1	AL365501,	AL138896, AL365501
S/G/Y/R/B/O	NT_033982	-	WI-18103			10	200.60	1	AL445484, AL591111,	AL445484, AL591104, AL591111
S/G/Y/R/B/O	NT_033982	-	RH93349	10	185.19			0
S/G/Y/R/B/O	NT_033982	-	SGC32671			10	200.70	1	AL138920, AL445484, AL591111,	AL138920, AL445484, AL591111
S/G/Y/R/B/O	NT_033982	-	RH93714	10	191.58			1	AL160291,	AL160291, AL365228
S/G/Y/R/B/O	NT_033982	-	D10S600			10	201.00	1	AC022021,	AC022021