Chromosome 10 - RH Maps - Single Contig

Chromosome 10 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_024115	NT_024081	NT_033983	NT_033894	NT_033916	NT_008705	NT_033921	NT_033986
NT_033892	NT_033226	NT_033223	NT_033227	NT_033912	NT_033982	NT_033988	NT_033896
NT_024133	NT_033987	NT_033985	NT_031847	NT_030066	NT_030772	NT_033228	NT_008646
NT_017696	NT_031860	NT_033898	NT_033920	NT_008748	NT_033222	NT_033990	NT_024085
NT_033984	NT_008797	NT_033897	NT_008583	NT_033220	NT_033891	NT_033895	NT_033917
NT_033989	NT_033918	NT_033919	NT_033893	NT_024037	NT_030075	NT_033890	NT_024064
NT_030070	NT_008769	NT_033229	NT_030059	NT_008818	NT_033221	NT_031855	NT_031856
NT_008902	NT_030764	NT_027097	NT_024086	NT_025835	NT_033224	NT_033225	NT_024040
NT_017795	NT_028298

NT_008705

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_008705	AL512783	12932789	3	RH51390	10	95.14			10	87.10	1		AC008647, AL512783
S/G/Y/R/B/O	NT_008705	AL512783	12932840	3	RH10216	10	95.14					1		AC008647, AL512783
S/G/Y/R/B/O	NT_008705	AL512783	12932877	3	RH10562	10	95.24					1		AC008647, AL512783
S/G/Y/R/B/O	NT_008705	AL512783	12933500	3	WI-13657					10	87.10	1		AC008647, AL512783
S/G/Y/R/B/O	NT_008705	AL512783	12933500	3	RH51477	10	95.04					1		AC008647, AL512783
S/G/Y/R/B/O	NT_008705	AL353586	12977270	3	AFM105XA9					10	87.10	1		AL353586
S/G/Y/R/B/O	NT_008705	AL353586	12982330	3	D10S570					10	103.80	1		AL353586
S/G/Y/R/B/O	NT_008705	AL353586	12995402	3	RH51014	10	95.04			10	86.20	1		AC053464, AL353586
S/G/Y/R/B/O	NT_008705	AL353586	12995802	3	RH74950	10	95.14					1		AC053464, AL353586
S/G/Y/R/B/O	NT_008705	AL353586	12995825	3	WI-20155					10	87.20	1		AC053464, AL353586
S/G/Y/R/B/O	NT_008705	AL353586	12995825	3	RH51510	10	95.04					1		AC053464, AL353586
S/G/Y/R/B/O	NT_008705	AL353586	12995872	3	RH44500	10	95.04					1		AC053464, AL353586
S/G/Y/R/B/O	NT_008705	AL353586	12995971	3	RH44318	10	95.14					1		AC053464, AL353586
S/G/Y/R/B/O	NT_008705	AL353586	12996080	3	RH70051	10	95.24					1		AC053464, AL353586
S/G/Y/R/B/O	NT_008705	AL353586	12996186	3	RH44748	10	95.14					1		AC053464, AL353586
S/G/Y/R/B/O	NT_008705	AL596124	13049634	3
S/G/Y/R/B/O	NT_008705	AL355355	13167399	3	RH91847	10	95.24					1		AC013446, AL355355
S/G/Y/R/B/O	NT_008705	AL355355	13224772	3	RH8935			10	599.00			1		AC013446, AF283525, AL355355
S/G/Y/R/B/O	NT_008705	AL355355	13224914	3	RH27932	10	94.94					1		AC013446, AF283525, AL355355
S/G/Y/R/B/O	NT_008705	AL355355	13236552	3	RH26016	10	95.24					1		AF283527, AL355355
S/G/Y/R/B/O	NT_008705	AL355355	13236614	3	RH70007	10	95.14					1		AF283527, AL355355
S/G/Y/R/B/O	NT_008705	AL355355	13237255	3	RH9803	10	95.14					1		AF283527, AL355355
S/G/Y/R/B/O	NT_008705	AL355355	13237257	3	RH44326	10	95.14					1		AF283527, AL355355
S/G/Y/R/B/O	NT_008705	AL138764	13321149	3	RH101945	10	95.04					1		AL138764
S/G/Y/R/B/O	NT_008705	AL138764	13376960	3	WI-16723					10	87.10	1		AL138764
S/G/Y/R/B/O	NT_008705	AL138764	13376960	3	RH51299	10	95.04					1		AL138764
S/G/Y/R/B/O	NT_008705	AL138764	13398713	3	RH44439	10	96.73					1		AL138764
S/G/Y/R/B/O	NT_008705	AL138764	13416606	3	RH51179	10	97.29			10	88.60	1		AL138764
S/G/Y/R/B/O	NT_008705	AL138764	13417856	3	RH48902	10	96.73					1		AL138764
S/G/Y/R/B/O	NT_008705	AL355870	13424614	3
S/G/Y/R/B/O	NT_008705	AL359172	13540276	3	RH76580	10	96.77					1		AL359172
S/G/Y/R/B/O	NT_008705	AL590677	13592298	3	RH47609	10	96.73					1		AL590677
S/G/Y/R/B/O	NT_008705	AL157392	13729419	3	RH69227	10	96.77					1		AL157392
S/G/Y/R/B/O	NT_008705	AL157392	13729558	3	RH70670	10	97.34					1		AL157392
S/G/Y/R/B/O	NT_008705	AL157392	13737641	3	RH46419	10	96.73					1		AL157392
S/G/Y/R/B/O	NT_008705	AL157392	13742872	3	RH51128	10	97.91			10	88.60	1		AL157392
S/G/Y/R/B/O	NT_008705	AL157392	13745067	3	RH50921	10	97.29			10	95.00	1		AL157392
S/G/Y/R/B/O	NT_008705	AL157392	13745203	3	RH10385	10	96.73					1		AL157392
S/G/Y/R/B/O	NT_008705	AL157392	13745529	3	RH45517	10	97.29					1		AL157392
S/G/Y/R/B/O	NT_008705	AL157392	13746907	3	RH51134	10	96.73	10	648.00	10	88.60	1		AL157392
S/G/Y/R/B/O	NT_008705	AL157392	13747018	3	RH70373	10	97.34					1		AL157392
S/G/Y/R/B/O	NT_008705	AL157392	13754868	3	RH37937			10	638.00			1		AL157392
S/G/Y/R/B/O	NT_008705	AL157392	13774933	3	RH45365	10	96.77					1		AL157392
S/G/Y/R/B/O	NT_008705	AL157392	13774951	3	RH40241	10	97.34					1		AL157392
S/G/Y/R/B/O	NT_008705	AL157392	13789037	3	RH65818	10	96.73					1		AL157392
S/G/Y/R/B/O	NT_008705	AL157392	13828735	3	RH46504	10	96.77					1		AL157392
S/G/Y/R/B/O	NT_008705	AL512660	13853630	3	AFMA111YB9					10	88.60	1		AL512660
S/G/Y/R/B/O	NT_008705	AL365495	13888428	2	RH42377	10	97.29			10	98.00	1		AC074244, AL365495
S/G/Y/R/B/O	NT_008705	AL365495	13888428	2	RH909			10	662.00			1		AC074244, AL365495
S/G/Y/R/B/O	NT_008705	AL365495	14005880	2	RH26694	10	96.73					1	AC021349, AC044781,	AC021349, AC044781, AC074244, AL365495

NT_008705 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_008705	AL365495	14006713	2	RH51560	10	97.29			10	88.60	1	AC021349, AC044781,	AC021349, AC044781, AC074244, AL365495
S/G/Y/R/B/O	NT_008705	AC044781	14047018	1	RH78375	10	96.73					1		AC044781
S/G/Y/R/B/O	NT_008705	AC021690	14168409	1
S/G/Y/R/B/O	NT_008705	AC021349	14173440	1
S/G/Y/R/B/O	NT_008705	AL607075	14176166	3
S/G/Y/R/B/O	NT_008705	AL157896	14191514	3	RH94371	10	96.73					1	AC021690,	AC021690, AL157896
S/G/Y/R/B/O	NT_008705	AC069025	14252988	3	RH50920	10	97.29			10	90.30	1		AC069025
S/G/Y/R/B/O	NT_008705	AC069025	14254374	3	RH26584	10	99.23					1		AC069025
S/G/Y/R/B/O	NT_008705	AC069025	14370165	3	RH49522	10	97.91					1		AC069025, AL161933
S/G/Y/R/B/O	NT_008705	AC069025	14370165	3	RH31126			10	378.00			1		AC069025, AL161933
S/G/Y/R/B/O	NT_008705	AC069025	14379887	3	RH75146	10	97.91					1		AC069025, AL161933
S/G/Y/R/B/O	NT_008705	AC069025	14379910	3	RH51406	10	97.91			10	88.60	1		AC069025, AL161933
S/G/Y/R/B/O	NT_008705	AL139405	14571633	3	WI-7482					10	88.60	1		AL139405
S/G/Y/R/B/O	NT_008705	AL139405	14625964	3	RH15036	10	99.33					1	AL157706,	AL139405, AL157706
S/G/Y/R/B/O	NT_008705	AL139405	14625972	3	RH634			10	694.00			1	AL157706,	AL139405, AL157706
S/G/Y/R/B/O	NT_008705	AL139405	14626991	3	RH44385	10	97.91					1	AL157706,	AL139405, AL157706
S/G/Y/R/B/O	NT_008705	AL157706	14628103	3	RH98163	10	99.33					1		AL157706
S/G/Y/R/B/O	NT_008705	AL157706	14628679	3	RH66346	10	97.91					1		AL157706
S/G/Y/R/B/O	NT_008705	AL157706	14666903	3	RH67687	10	99.33					1		AL157706
S/G/Y/R/B/O	NT_008705	AL157706	14666943	3	RH45961	10	99.33					1		AL157706
S/G/Y/R/B/O	NT_008705	AL157706	14668528	3	RH51270	10	96.73			10	88.60	1		AL157706
S/G/Y/R/B/O	NT_008705	AL157706	14690264	3	WI-9933					10	88.60	1		AL157706
S/G/Y/R/B/O	NT_008705	AL158168	14744303	3
S/G/Y/R/B/O	NT_008705	AC069544	14951950	3	RH51178	10	97.29			10	99.80	1		AC069544
S/G/Y/R/B/O	NT_008705	AC069544	14952105	3	RH51131	10	97.91			10	88.50	1		AC069544
S/G/Y/R/B/O	NT_008705	AC069544	14954847	3	RH33187			10	707.00			1		AC069544
S/G/Y/R/B/O	NT_008705	AC069544	14954847	3	RH54867	16	63.97			16	29.50	1		AC069544
S/G/Y/R/B/O	NT_008705	AC069544	14954864	3	RH26137	10	97.91					1
S/G/Y/R/B/O	NT_008705	AC069544	14979473	3	RH45792	10	97.91					1		AC069544
S/G/Y/R/B/O	NT_008705	AC069544	15005835	3	RH92823	10	97.91					1		AC069544
S/G/Y/R/B/O	NT_008705	AC069544	15006631	3	RH51254	10	99.43			10	99.70	1		AC069544
S/G/Y/R/B/O	NT_008705	AL360083	15011199	3	RH48597	10	97.91					2	AL139396,	AC002413, AL139396, AL360083
S/G/Y/R/B/O	NT_008705	AL360083	15013038	3	RH76565	10	97.94					2	AL139396,	AC002413, AL139396, AL360083
S/G/Y/R/B/O	NT_008705	AL360083	15013049	3	RH40281	10	99.23					1		AL360083
S/G/Y/R/B/O	NT_008705	AL360083	15016594	3	RH26366	10	97.91					1		AL360083
S/G/Y/R/B/O	NT_008705	AL360083	15016754	3	RH40264	10	99.23					1		AL360083
S/G/Y/R/B/O	NT_008705	AL360083	15063612	3	RH66273	10	97.91					1		AL360083
S/G/Y/R/B/O	NT_008705	AL157391	15102998	3
S/G/Y/R/B/O	NT_008705	AL590365	15212451	3	RH71259	10	101.35					1		AL590365
S/G/Y/R/B/O	NT_008705	AL590365	15216993	3	RH75714	10	102.58					1		AL590365
S/G/Y/R/B/O	NT_008705	AL590365	15276093	3	RH104381	10	103.11					1		AL590365
S/G/Y/R/B/O	NT_008705	AL607028	15340977	3
S/G/Y/R/B/O	NT_008705	AL139338	15457131	3
S/G/Y/R/B/O	NT_008705	AL590636	15705160	3	RH48069	10	106.67					1		AC018794, AL590636
S/G/Y/R/B/O	NT_008705	AL359645	15744238	3	RH31127			10	738.00			1		AC018794, AL359645
S/G/Y/R/B/O	NT_008705	AL590439	15886579	3	RH51513	10	116.51			10	113.40	1		AL590439
S/G/Y/R/B/O	NT_008705	AL590439	15897383	3	RH51289	10	108.85			10	108.10	1		AL590439
S/G/Y/R/B/O	NT_008705	AL358033	16060697	3	RH74406	10	111.78	10	765.00			1		AL358033
S/G/Y/R/B/O	NT_008705	AL359816	16123100	3
S/G/Y/R/B/O	NT_008705	AL358978	16223201	3

NT_008705 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_008705	AL355339	16305425	3
S/G/Y/R/B/O	NT_008705	AL360230	16585538	3	CHLC.GATA6E06.200					10	112.20	1		AC024339, AL360230
S/G/Y/R/B/O	NT_008705	AL360230	16620415	3	RH75118	10	132.10					1		AC024339, AL360230
S/G/Y/R/B/O	NT_008705	AL360230	16621575	3	RH48169	10	115.15					1		AC024339, AL360230
S/G/Y/R/B/O	NT_008705	AL360230	16624199	3	RH98481	10	111.58					1		AC024339, AL360230
S/G/Y/R/B/O	NT_008705	AL353576	16627589	3
S/G/Y/R/B/O	NT_008705	AC073367	16700421	3	RH40214	10	112.08					1		AC021030, AC021031, AC021041, AC022282, AC068893, AC073367
S/G/Y/R/B/O	NT_008705	AC073367	16701357	3	RH17616	10	115.15					1		AC021030, AC021031, AC021041, AC022282, AC073367
S/G/Y/R/B/O	NT_008705	AC073367	16769624	3	RH31129			10	794.00			1		AC021030, AC021031, AC021033, AC021041, AC068893, AC073367
S/G/Y/R/B/O	NT_008705	AC073367	16828704	3	RH76743	10	124.09					1		AC068893, AC073367
S/G/Y/R/B/O	NT_008705	AC073367	16828820	3	RH103137	10	115.15					1		AC068893, AC073367
S/G/Y/R/B/O	NT_008705	AC073367	16840242	3	RH74842	10	115.21					1	AL365215,	AC019248, AC068893, AC073367, AL365215
S/G/Y/R/B/O	NT_008705	AL365215	16885382	3	RH51394	10	115.11			10	110.20	1		AC019248, AL365215
S/G/Y/R/B/O	NT_008705	AL365215	16887162	3	RH26639	10	131.99					1		AC019248, AL365215
S/G/Y/R/B/O	NT_008705	AL596445	17024619	3
S/G/Y/R/B/O	NT_008705	AC053510	17035341	1
S/G/Y/R/B/O	NT_008705	AC024605	17067266	1
S/G/Y/R/B/O	NT_008705	AC067747	17257221	3	RH70165	10	112.08					1	AL133415,	AC067747, AL133415
S/G/Y/R/B/O	NT_008705	AL133415	17309357	3	RH92114	10	115.21					1		AL133415
S/G/Y/R/B/O	NT_008705	AL133415	17322809	3	RH51148	10	115.21			10	112.60	1		AC016235, AL133415
S/G/Y/R/B/O	NT_008705	AL133415	17345638	3	RH11024	10	111.98					1		AC016235, AL133415
S/G/Y/R/B/O	NT_008705	AL158164	17423877	3	RH40131	10	115.15					1		AC016235, AL158164
S/G/Y/R/B/O	NT_008705	AL158164	17423892	3	RH45105	10	115.05					1		AC016235, AL158164
S/G/Y/R/B/O	NT_008705	AL158164	17428092	3	RH51198	10	115.15			10	114.10	1		AC016235, AL158164
S/G/Y/R/B/O	NT_008705	AL158164	17428206	3	RH46071	10	115.36					1		AC016235, AL158164
S/G/Y/R/B/O	NT_008705	AL158164	17462000	3	RH40178	10	115.15					1		AC016235, AL158164
S/G/Y/R/B/O	NT_008705	AL158164	17502372	3	RH70064	10	115.15					1		AC016235, AL158164
S/G/Y/R/B/O	NT_008705	AL158164	17516477	3	RH94156	10	115.15					1		AL158164
S/G/Y/R/B/O	NT_008705	AL160289	17563620	3	RH91938	10	115.21					1		AL160289
S/G/Y/R/B/O	NT_008705	AL391334	17584173	3
S/G/Y/R/B/O	NT_008705	AC069542	17698388	3	RH40201	10	111.68					1		AC068897, AC069542
S/G/Y/R/B/O	NT_008705	AC069542	17793466	3	RH45982	10	114.60					1	AL139238,	AC011640, AC068897, AC069542, AL139238
S/G/Y/R/B/O	NT_008705	AC069542	17795739	3	RH46555	10	115.15					1	AL139238,	AL139238
S/G/Y/R/B/O	NT_008705	AC069542	17823277	3	RH40166	10	115.15					1	AL139238,	AC011640, AC068897, AC069542, AL139238
S/G/Y/R/B/O	NT_008705	AC069542	17823838	3	RH70633	10	111.98					1	AL139238,	AC011640, AC068897, AC069542, AL139238
S/G/Y/R/B/O	NT_008705	AC069542	17838611	3	RH75564	10	127.75					1	AL139238,	AC011640, AC068897, AC069542, AL139238
S/G/Y/R/B/O	NT_008705	AC069542	17843052	3	RH45650	10	115.15					1		AC011640
S/G/Y/R/B/O	NT_008705	AL139238	17908937	2	RH102562	10	115.15					1	AC069023,	AC011640, AC069023, AL139238
S/G/Y/R/B/O	NT_008705	AL139238	17917649	2	RH40289	10	115.15					1		AC011640, AL139238
S/G/Y/R/B/O	NT_008705	AC069023	18015881	1	RH69202	10	115.15					1	AC011982, AC015944,	AC011982, AC015944, AC069023, AL157885
S/G/Y/R/B/O	NT_008705	AC069023	18018846	1	RH8302			10	841.00			1	AC011982, AC015944,	AC011982, AC015944, AC069023, AL157885
S/G/Y/R/B/O	NT_008705	AC069023	18019131	1	RH40181	10	114.60					1	AC011982, AC015944,	AC011982, AC015944, AC069023, AL157885
S/G/Y/R/B/O	NT_008705	AC011982	17964507	1	RH69201	10	114.60					1		AC011982, AL157885
S/G/Y/R/B/O	NT_008705	AC015944	17971644	1
S/G/Y/R/B/O	NT_008705	AL590111	18070385	3
S/G/Y/R/B/O	NT_008705	AL360231	18260969	3	RH103864	10	115.21					1		AL360231
S/G/Y/R/B/O	NT_008705	AL353603	18279760	3	RH51074	10	115.21	10	899.00	10	114.90	1		AL353603
S/G/Y/R/B/O	NT_008705	AL390783	18301983	2	RH33475			10	863.00			1		AL390783
S/G/Y/R/B/O	NT_008705	AL390783	18302054	2	RH44603	10	129.20					1		AL390783
S/G/Y/R/B/O	NT_008705	AL390783	18437518	2	RH51094	10	115.88			10	114.30	1		AL390783

NT_008705 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_008705	AL139814	18540589	3	D10S548					10	124.90	1		AL139814
S/G/Y/R/B/O	NT_008705	AL139814	18540589	3	RH967			10	863.00			1		AL139814
S/G/Y/R/B/O	NT_008705	AL139814	18540733	3	RH49063	10	119.58					1		AL139814
S/G/Y/R/B/O	NT_008705	AL139814	18572462	3	RH17936	10	119.48					1		AL139814
S/G/Y/R/B/O	NT_008705	AL139814	18572605	3	RH27039	10	122.09					1		AL139814
S/G/Y/R/B/O	NT_008705	AL450364	18587667	3
S/G/Y/R/B/O	NT_008705	AL450384	18647829	3	RH7876			10	868.00			1		AL450384, AY027898
S/G/Y/R/B/O	NT_008705	AL450384	18649062	3	RH40272	10	122.09					1		AL450384, AY027898
S/G/Y/R/B/O	NT_008705	AL450384	18651622	3	RH40198	10	117.35					1		AL450384
S/G/Y/R/B/O	NT_008705	AL450384	18659419	3	RH51431	10	121.38			10	124.90	1		AL450384
S/G/Y/R/B/O	NT_008705	AL450384	18722049	3	RH40237	10	124.29					1		AL450384
S/G/Y/R/B/O	NT_008705	AL450384	18722136	3	RH45948	10	122.09					1		AL450384
S/G/Y/R/B/O	NT_008705	AL512641	18746327	3
S/G/Y/R/B/O	NT_008705	AL589882	18917015	3
S/G/Y/R/B/O	NT_008705	AL357520	19049110	3	RH40154	10	122.04					1		AL357520
S/G/Y/R/B/O	NT_008705	AL450470	19161223	3
S/G/Y/R/B/O	NT_008705	AL391992	19257142	3	CHLC.GATA70E11					10	121.70	1		AC015460, AL391992
S/G/Y/R/B/O	NT_008705	AL590378	19270054	3
S/G/Y/R/B/O	NT_008705		-		RH44190	10	115.15					0	AC011982,	AC011982, AL157885
S/G/Y/R/B/O	NT_008705		-		RH31125			10	682.00			1	AL355591,	AL355591
S/G/Y/R/B/O	NT_008705		-		WI-11468					10	100.80	1	AL512770,	AL512770
S/G/Y/R/B/O	NT_008705		-		RH51251	10	117.38					1	AL353790,	AL353790
S/G/Y/R/B/O	NT_008705		-		SGC33345					10	104.80	1	AC026221,	AC026221