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  Chromosome 10 - RH Maps - Single Contig
 

Chromosome 10 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_024115 NT_024081 NT_033983 NT_033894 NT_033916 NT_008705 NT_033921 NT_033986
NT_033892 NT_033226 NT_033223 NT_033227 NT_033912 NT_033982 NT_033988 NT_033896
NT_024133 NT_033987 NT_033985 NT_031847 NT_030066 NT_030772 NT_033228 NT_008646
NT_017696 NT_031860 NT_033898 NT_033920 NT_008748 NT_033222 NT_033990 NT_024085
NT_033984 NT_008797 NT_033897 NT_008583 NT_033220 NT_033891 NT_033895 NT_033917
NT_033989 NT_033918 NT_033919 NT_033893 NT_024037 NT_030075 NT_033890 NT_024064
NT_030070 NT_008769 NT_033229 NT_030059 NT_008818 NT_033221 NT_031855 NT_031856
NT_008902 NT_030764 NT_027097 NT_024086 NT_025835 NT_033224 NT_033225 NT_024040
NT_017795 NT_028298


  NT_033890
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_033890AC069537817431631RH31144  103612.00  1 AC069537
S/G/Y/R/B/O NT_033890AC069537817431631RH4952610390.16    1 AC069537
S/G/Y/R/B/O NT_033890AC023291817082151          
S/G/Y/R/B/O NT_033890AC010163818880393RH6798610397.70    1AC069537, AC010163, AC069537
S/G/Y/R/B/O NT_033890AC012560819728683          
S/G/Y/R/B/O NT_033890AL583852821117763AFM094YH3    10465.101AC016820, AC012084, AC016820, AC073371, AL583852
S/G/Y/R/B/O NT_033890AC016820821941293RH4821510388.64    1 AC010187, AC011795, AC016820, AC023800
S/G/Y/R/B/O NT_033890AC013419823476231CHLC.GATA91D01    10469.401AC010195, AC010195, AC013419, AC074323
S/G/Y/R/B/O NT_033890AC010195823548891          
S/G/Y/R/B/O NT_033890AL358034823674313          
S/G/Y/R/B/O NT_033890AL450398824976433WI-5260    10467.501AC013253, AC013253, AL450398
S/G/Y/R/B/O NT_033890AL450398825018083RH9932210388.64    1 AL450398
S/G/Y/R/B/O NT_033890AL356753825950513RH8058310387.52    1AC013253, AC013253, AL356753
S/G/Y/R/B/O NT_033890AL358782827103273          
S/G/Y/R/B/O NT_033890AC013253827522991          
S/G/Y/R/B/O NT_033890AC012465827540541          
S/G/Y/R/B/O NT_033890AL391665827648452RH7029310390.06    1 AC006188, AL391665
S/G/Y/R/B/O NT_033890AL391665828324922RH1089  103688.00  1 AL139242, AL391665
S/G/Y/R/B/O NT_033890AL391665828445002RH6856910390.06    1 AL139242, AL391665
S/G/Y/R/B/O NT_033890AL391665828788372RH4754610388.64    1 AL139242, AL391665
S/G/Y/R/B/O NT_033890AL391665828793712RH989810388.64    1 AL139242, AL391665
S/G/Y/R/B/O NT_033890AL391665828990722WI-19453    10465.801 AL391665
S/G/Y/R/B/O NT_033890AL391665828990722RH5111910388.77    1 AL391665
S/G/Y/R/B/O NT_033890AL133481829176433WI-6610    10467.502AC023161, AL391665, AC023161, AC078775, AL133481, AL391665
S/G/Y/R/B/O NT_033890AL133481829176433RH5096610388.64    2AC023161, AL391665, AC023161, AC078775, AL133481, AL391665
S/G/Y/R/B/O NT_033890AL133481829176663RH1714810397.81    2AC023161, AL391665, AC023161, AC078775, AL133481, AL391665
S/G/Y/R/B/O NT_033890AL133481829180173RH10293810388.64    2AL391665, AL133481, AL391665
S/G/Y/R/B/O NT_033890AL133481829181063WI-20925    10467.502AC023161, AL391665, AC023161, AC078775, AL133481, AL391665
S/G/Y/R/B/O NT_033890AL133481829181063RH5124110388.64    2AC023161, AL391665, AC023161, AC078775, AL133481, AL391665
S/G/Y/R/B/O NT_033890AL133481829455233WI-12518    10467.402AC023161, AL391665, AC023161, AC078775, AL133481, AL391665
S/G/Y/R/B/O NT_033890AL133481829455233RH5137810388.64    2AC023161, AL391665, AC023161, AC078775, AL133481, AL391665
S/G/Y/R/B/O NT_033890AL133481829455263RH3666910388.54    2AC023161, AL391665, AC023161, AC078775, AL133481, AL391665
S/G/Y/R/B/O NT_033890AL133481829455333TIGR-A004Y13    10465.702AC023161, AL391665, AC023161, AC078775, AL133481, AL391665
S/G/Y/R/B/O NT_033890AL133481829455333RH5122210388.74    2AC023161, AL391665, AC023161, AC078775, AL133481, AL391665
S/G/Y/R/B/O NT_033890AL133481829464583RH2605310388.54    2AC023161, AL391665, AC023161, AC078775, AL133481, AL391665
S/G/Y/R/B/O NT_033890AL133481829468713RH7611410388.38    2AC023161, AL391665, AC023161, AC078775, AL133481, AL391665
S/G/Y/R/B/O NT_033890AL133481829675553RH10415510398.22    1 AC006108, AC078775, AL133481
S/G/Y/R/B/O NT_033890AC068139830794523RH9315310388.64    2AL513174, AC010194, AC012043, AC068139, AC078775, AL513174
S/G/Y/R/B/O NT_033890AC068139831190353RH1769010399.13    2 AC010194, M30838
S/G/Y/R/B/O NT_033890AC068139831191473RH5096710398.22103725.0010472.201 AC010194, AC068139, M68519
S/G/Y/R/B/O NT_033890AC068139831782903RH4027410398.22    1 AC010194, AC068139, M30838
S/G/Y/R/B/O NT_033890AC068139831784883RH1769010399.13    2 AC010194, M30838
S/G/Y/R/B/O NT_033890AC068139831786033RH9320010388.64    1 AC010194, AC068139, M30838
S/G/Y/R/B/O NT_033890AL132656832398063RH9878110399.13    4AC068619, AC091134, AL157893, AL645612, AC010194, AC068619, AC091134, AL132656, AL132656, AL157893, AL645612
S/G/Y/R/B/O NT_033890AL132656832401403RH9337810420.28    4AC069545, AL157893, AL645612, AC010194, AC069545, AL132656, AL132656, AL157893, AL645612, AL713976
S/G/Y/R/B/O NT_033890AL132656832807293RH5108910399.08  10477.403AL157893, AL355334, AL645992, AC010194, AL132656, AL157893, AL355334, AL645992
S/G/Y/R/B/O NT_033890AL132656832813003RH5108310400.57  10480.203AL157893, AL355334, AL645992, AC010194, AL132656, AL157893, AL355334, AL645992
S/G/Y/R/B/O NT_033890AL132656832813993RH4425410432.51    3AL157893, AL355334, AL645992, AC010194, AL132656, AL157893, AL355334, AL645992
S/G/Y/R/B/O NT_033890AL132656832823483RH5155310413.13  10505.102AL157893, AL645992, AL132656, AL157893, AL645992
S/G/Y/R/B/O NT_033890AL132656833096913RH4589510433.83    3AL157893, AL355334, AL645992, AL132656, AL157893, AL355334, AL645992


  NT_033890 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_033890AL132656833277893RH4017710407.49    2AL355334, AL132656, AL355334
S/G/Y/R/B/O NT_033890AL132656833292413RH4435410420.60    3AL157893, AL355334, AL645612, AL645992, AL132656, AL157893, AL355334, AL645612, AL645992
S/G/Y/R/B/O NT_033890AL132656833425013RH5117410413.13  10505.103AL157893, AL355334, AL645612, AL645612, AL132656, AL157893, AL355334, AL645612, AL645612
S/G/Y/R/B/O NT_033890AL132656833525213RH4466710396.96    1 AL132656
S/G/Y/R/B/O NT_033890AL132656833540623RH9213010432.65    2AL157893, AL645612, AL132656, AL157893, AL645612
S/G/Y/R/B/O NT_033890AL132656833599243RH6759010420.98    2AL157893, AL645612, AL132656, AL157893, AL645612
S/G/Y/R/B/O NT_033890AL132656833609243RH9337810420.28    4AC069545, AL157893, AL645612, AC010194, AC069545, AL132656, AL132656, AL157893, AL645612, AL713976
S/G/Y/R/B/O NT_033890AL132656833612943RH9878110399.13    4AC068619, AC091134, AL157893, AL645612, AC010194, AC068619, AC091134, AL132656, AL132656, AL157893, AL645612
S/G/Y/R/B/O NT_033890AL603703833650483          
S/G/Y/R/B/O NT_033890AL135925833670423          
S/G/Y/R/B/O NT_033890AL512662834550883RH7842  54558.00  3AC008494, AC094095, AL589794, AC008494, AC008585, AC016663, AC094095, AL512662, AL513306, AL589794
S/G/Y/R/B/O NT_033890AL512662834699563RH2540110281.21    4AC022400, AC037447, AL603966, AL603982, AL645813, AC022400, AC037447, AL023808, AL360082, AL512662, AL591132, AL591181, AL603966, AL603982, AL645813
S/G/Y/R/B/O NT_033890AL512662834847673RH4016210400.25    1 AL512662
S/G/Y/R/B/O NT_033890AL512662835011113RH7135310399.29    1 AL512662
S/G/Y/R/B/O NT_033890AL512662835012693RH4031310399.93    1 AL512662
S/G/Y/R/B/O NT_033890AL356095836095793RH5140010397.28  10469.101 AL356095
S/G/Y/R/B/O NT_033890AL356095836097343RH4608410398.82    1 AL356095
S/G/Y/R/B/O NT_033890AL356095836514683RH4022010402.21    1 AC012043, AL356095
S/G/Y/R/B/O NT_033890AL356095836543303RH5118310400.03  10477.403 AC012043, AL356095
S/G/Y/R/B/O NT_033890AL356095836555193RH5126610402.03  10477.601 AC012043, AL356095
S/G/Y/R/B/O NT_033890AL356095837085503RH4646510401.30    1 AL356095, AL357792
S/G/Y/R/B/O NT_033890AL356095837124153RH4852710397.49    1 AC012043, AL356095, AL357792
S/G/Y/R/B/O NT_033890AL356095837145393RH10286010399.97    1 AC012043, AL356095, AL357792
S/G/Y/R/B/O NT_033890AL356095837185773RH4022110402.53    1 AC012043, AL356095, AL357792
S/G/Y/R/B/O NT_033890AL356095837189413RH4407810401.27    1 AC012043, AL356095, AL357792
S/G/Y/R/B/O NT_033890AL356095837203453RH5112010400.03  10477.401 AC012043, AL356095, AL357792
S/G/Y/R/B/O NT_033890AL513174838072863RH9315310388.64    2AC068139, AC010194, AC012043, AC068139, AC078775, AL513174
S/G/Y/R/B/O NT_033890AL359195838352893RH4410510398.82    1 AL357792, AL357792, AL359195
S/G/Y/R/B/O NT_033890AC021028839953301RH8940  103749.00  1 AC021028
S/G/Y/R/B/O NT_033890AC021028839960671RH9242110401.20    1 AC021028
S/G/Y/R/B/O NT_033890AC021028840000391RH4013310400.03    1AC068407, AC092786, AC021028, AC068407, AC092786, AP002889
S/G/Y/R/B/O NT_033890AC021028840001691RH5109810400.03  10477.401 AC021028
S/G/Y/R/B/O NT_033890AC021028840731831RH5108810400.03  10477.401AC063966, AC021028, AC063966
S/G/Y/R/B/O NT_033890AC021028840733161RH7530810397.39    1AC063966, AC021028, AC063966
S/G/Y/R/B/O NT_033890AC021028840828401RH1041810402.03    1AC063966, AC021028, AC063966
S/G/Y/R/B/O NT_033890AC021028840856721RH6771110401.93    1AC063966, AC021028, AC063966
S/G/Y/R/B/O NT_033890AC021028840893601RH5104710398.92  10469.201AC063966, AC021028, AC063966
S/G/Y/R/B/O NT_033890AC021028840894111RH4528210402.66    1AC063966, AC021028, AC063966
S/G/Y/R/B/O NT_033890AC021028840930911RH14289  103739.00  1AC063966, AC021028, AC063966
S/G/Y/R/B/O NT_033890AC021028840936531RH2549310397.70    1AC063966, AC021028, AC063966
S/G/Y/R/B/O NT_033890AC063966841325501          
S/G/Y/R/B/O NT_033890AC016818842202651          
S/G/Y/R/B/O NT_033890AC009405842202663          
S/G/Y/R/B/O NT_033890AC027673842875253          
S/G/Y/R/B/O NT_033890AC013242844570771          
S/G/Y/R/B/O NT_033890AL356154847018582RH1317  122167.00  2AC023794, AC025507, AC078778, AC023794, AC025507, AC078778, AL356154
S/G/Y/R/B/O NT_033890AL356307847643293          
S/G/Y/R/B/O NT_033890AL512627848458683          
S/G/Y/R/B/O NT_033890AL161650848709473          
S/G/Y/R/B/O NT_033890AL096707850077503          


  NT_033890 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_033890AL356795851602193          
S/G/Y/R/B/O NT_033890AL096704852322563          
S/G/Y/R/B/O NT_033890AL096706853284263          
S/G/Y/R/B/O NT_033890AL096863854641873CHLC.ATC2E08    10482.401 AL096863
S/G/Y/R/B/O NT_033890AL096863854850843WI-4544    10488.801 AL096863
S/G/Y/R/B/O NT_033890AL096864855442743          
S/G/Y/R/B/O NT_033890AL096705857317453RH4952710405.17103813.00  1 AL096705
S/G/Y/R/B/O NT_033890AC010157857689343RH6739210405.17    1 AC010157
S/G/Y/R/B/O NT_033890AC010157857730163RH4605110405.17    1 AC010157
S/G/Y/R/B/O NT_033890AC010157857730173RH7666710398.92    1 AC010157
S/G/Y/R/B/O NT_033890AL356129858325683          
S/G/Y/R/B/O NT_033890AL391478858928193RH5153810399.82  10482.601 AL391478
S/G/Y/R/B/O NT_033890AL391478859199503RH5126710405.17  10488.701 AL391478
S/G/Y/R/B/O NT_033890AL391478859269243WI-5171    10482.401 AL391478
S/G/Y/R/B/O NT_033890AL391478859338353RH6882710405.17    1 AL391478
S/G/Y/R/B/O NT_033890AL391478860115303RH7035410405.17    1 AL391478
S/G/Y/R/B/O NT_033890AL391478860115423RH5116410405.17103818.0010488.701 AL391478
S/G/Y/R/B/O NT_033890AL391478860394553RH6647810399.50    1 AL391478
S/G/Y/R/B/O NT_033890AL391478860409153RH33673  103818.00  1 AL391478
S/G/Y/R/B/O NT_033890AL513316860434493          
S/G/Y/R/B/O NT_033890AL358552861066093RH5157910407.08103823.0010487.601 AL358552
S/G/Y/R/B/O NT_033890AL358552862145673RH7034010405.17    1 AC022746, AL358552
S/G/Y/R/B/O NT_033890AL358552862146683RH5109610400.88103828.0010484.401 AC022746, AL358552
S/G/Y/R/B/O NT_033890AL358552862202893RH5156710400.88103828.0010483.901 AL358552
S/G/Y/R/B/O NT_033890AL513204862339943RH8012010403.77    1 AL355813, AL513204
S/G/Y/R/B/O NT_033890AL354749863870743RH5103710407.08  10491.701 AC025673, AL354749
S/G/Y/R/B/O NT_033890AL136085864916733          
S/G/Y/R/B/O NT_033890AL589782865449143RH7776010405.17    1 AL589782
S/G/Y/R/B/O NT_033890AL589782865450633RH1036110405.17    1 AL589782
S/G/Y/R/B/O NT_033890AL592302867138573          
S/G/Y/R/B/O NT_033890AL451146867911601          
S/G/Y/R/B/O NT_033890AL356140869900513          
S/G/Y/R/B/O NT_033890AL138763871935543RH34276  103881.0010493.601 AL138763
S/G/Y/R/B/O NT_033890AL138763871935543RH543  103872.00  1 AL138763
S/G/Y/R/B/O NT_033890AL138763871936383RH4907010407.49    1 AL138763
S/G/Y/R/B/O NT_033890AL138763872010533RH30754  103902.00  1 AL138763
S/G/Y/R/B/O NT_033890AL354918872084413          
S/G/Y/R/B/O NT_033890AC069540872150763          
S/G/Y/R/B/O NT_033890 - RH4561810397.49    0  
S/G/Y/R/B/O NT_033890 - RH7867  103703.00  1AC023161, AC023161
S/G/Y/R/B/O NT_033890 - SGC32818    10479.101AC027393, AL392111, AC027393, AL392111
S/G/Y/R/B/O NT_033890 - RH7602210400.19    0  
S/G/Y/R/B/O NT_033890 - RH7629810400.30    1AC022389, AC022389
S/G/Y/R/B/O NT_033890 - RH9346810399.93    0