Chromosome 19 - RH Maps - Single Contig

Chromosome 19 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_025920	NT_030867	NT_011227	NT_030171	NT_011277	NT_011269	NT_011268	NT_011258
NT_030869	NT_011271	NT_011255	NT_011274	NT_011316	NT_011145	NT_031917	NT_029485
NT_025133	NT_011176	NT_031915	NT_011151	NT_025155	NT_011290	NT_025130	NT_011281
NT_011141	NT_030861	NT_011288	NT_011295	NT_033318	NT_027203	NT_031920	NT_026483
NT_033317	NT_033315	NT_025183	NT_025175	NT_025197	NT_030182	NT_025922	NT_030862
NT_011196	NT_011294	NT_011296	NT_011192	NT_011233	NT_011250	NT_011139	NT_011266
NT_011109	NT_033313	NT_033316	NT_011091	NT_011148	NT_025184	NT_011225	NT_011150
NT_011104

NT_011255

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_011255	AC011488	4335908	2	RH55801	19	32.22			19	17.10	1	AC034201,	AC011488, AC034201
S/G/Y/R/B/O	NT_011255	AC011488	4500600	2	RH41947	19	33.46					1	AC034201,	AC011488, AC034201
S/G/Y/R/B/O	NT_011255	AC011488	4500737	2	RH10789	19	31.19					1	AC034201,	AC011488, AC034201
S/G/Y/R/B/O	NT_011255	AC011488	4533495	2	RH80123	19	31.92					1	AC016586, AC034201,	AC011488, AC016586, AC034201
S/G/Y/R/B/O	NT_011255	AC011488	4533534	2	RH78243	19	31.19					1	AC016586, AC034201,	AC011488, AC016586, AC034201
S/G/Y/R/B/O	NT_011255	AC034201	4517078	1	RH47447	19	31.40					1	AC011488,	AC011488, AC034201
S/G/Y/R/B/O	NT_011255	AC016586	4597345	2	RH91112	19	31.19					1		AC016586
S/G/Y/R/B/O	NT_011255	AC016586	4597382	2	RH25654	19	32.22					1
S/G/Y/R/B/O	NT_011255	AC016586	4604731	2	RH26111	19	31.19					1		AC016586
S/G/Y/R/B/O	NT_011255	AC016586	4661289	2	RH104182	19	32.22					1	AC027272,	AC016586, AC027272
S/G/Y/R/B/O	NT_011255	AC016586	4674283	2	RH17501	19	32.22					1	AC027272,	AC016586, AC027272
S/G/Y/R/B/O	NT_011255	AC016586	4674415	2	RH12333	19	264.83					1	AC027272,	AC016586, AC027272
S/G/Y/R/B/O	NT_011255	AC027272	4623953	1
S/G/Y/R/B/O	NT_011255	AC005620	4740026	3	RH93156	19	31.19					1	AC016586, AC027272,	AC005620, AC016586, AC027272
S/G/Y/R/B/O	NT_011255	AC006930	4742037	3
S/G/Y/R/B/O	NT_011255	AC005578	4802980	3	RH39079	19	32.02					1	AC027272,	AC005578, AC027272
S/G/Y/R/B/O	NT_011255	AC008616	4834552	3	RH102374	19	32.22					1	AC104521,	AC008616, AC104521
S/G/Y/R/B/O	NT_011255	AC008616	4856414	3	RH55756	19	32.33			19	17.40	1	AC104521,	AC008616, AC104521
S/G/Y/R/B/O	NT_011255	AC008616	4889403	3	RH91102	19	32.22					1	AC104521,	AC008616, AC104521
S/G/Y/R/B/O	NT_011255	AC008616	4889904	3	RH55731	19	31.92			19	19.00	1	AC104521,	AC008616, AC104521
S/G/Y/R/B/O	NT_011255	AC104521	4891088	1
S/G/Y/R/B/O	NT_011255	AC007292	4902029	3
S/G/Y/R/B/O	NT_011255	AC011498	5005256	3	RH17788	19	31.92					1		AC011498, AF190465
S/G/Y/R/B/O	NT_011255	AC011498	5005329	3	RH27178	19	32.22					1		AC011498, AF190465
S/G/Y/R/B/O	NT_011255	AC011498	5008192	3	RH32228			19	210.00			1		AC011498, AF190465
S/G/Y/R/B/O	NT_011255	AC011498	5008210	3	RH70581	19	31.92					1		AC011498, AF190465
S/G/Y/R/B/O	NT_011255	AC011498	5010215	3	RH80339	19	33.46					1		AC011498, AF190465
S/G/Y/R/B/O	NT_011255	AC011498	5010256	3	RH78272	19	31.19					1		AC011498, AF190465
S/G/Y/R/B/O	NT_011255	AC011498	5067417	3	RH80135	19	31.32					1		AC011498
S/G/Y/R/B/O	NT_011255	AC011498	5102315	3	RH48973	19	32.33					1		AC011498
S/G/Y/R/B/O	NT_011255	AC011498	5102434	3	RH80514	19	31.92					1		AC011498
S/G/Y/R/B/O	NT_011255	AC011498	5102540	3	RH91548	19	32.22					1		AC011498
S/G/Y/R/B/O	NT_011255	AC005339	5213030	3	RH69233	19	31.92					1		AC005339
S/G/Y/R/B/O	NT_011255	AC005339	5220471	3	RH16448	19	32.22					1		AC005339
S/G/Y/R/B/O	NT_011255	AC005339	5220513	3	RH66880	19	31.92					1		AC005339
S/G/Y/R/B/O	NT_011255	AC005339	5222876	3	RH16158	19	31.19					1		AC005339
S/G/Y/R/B/O	NT_011255	AC005594	5240737	3	RH102208	19	31.19					1		AC005594
S/G/Y/R/B/O	NT_011255	AC005783	5264297	3
S/G/Y/R/B/O	NT_011255	AC006537	5305994	3
S/G/Y/R/B/O	NT_011255	AC005523	5360490	3	RH80153	19	32.95					2		AC005523
S/G/Y/R/B/O	NT_011255	AC027319	5381131	3	RH55885	19	32.64			19	20.10	1		AC027319
S/G/Y/R/B/O	NT_011255	AC027319	5381148	3	RH39149	19	33.36					1		AC027319
S/G/Y/R/B/O	NT_011255	AC027319	5403565	3	RH45134	19	33.46					1		AC027319
S/G/Y/R/B/O	NT_011255	AC027319	5514527	3	D19S216					19	20.80	1	AC019114,	AC019114
S/G/Y/R/B/O	NT_011255	AC027319	5514527	3	RH4508	19	35.88					1	AC019114,	AC019114
S/G/Y/R/B/O	NT_011255	AC104525	5518360	3
S/G/Y/R/B/O	NT_011255	AC053467	5534051	3
S/G/Y/R/B/O	NT_011255	AC019114	5563874	1
S/G/Y/R/B/O	NT_011255	AC005595	5574766	3
S/G/Y/R/B/O	NT_011255	AC093033	5614069	3

NT_011255 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_011255	AC022517	5721410	3	WI-15786			19	20.50	1		AC021618, AC022517
S/G/Y/R/B/O	NT_011255	AC022517	5721410	3	RH55961	19	34.68			1		AC021618, AC022517
S/G/Y/R/B/O	NT_011255	AC022517	5727832	3	WI-4539			1	200.10	2	AC016677, AC103923,	AC016677, AC021618, AC022517, AC103923
S/G/Y/R/B/O	NT_011255	AC022517	5737546	3	RH80247	19	38.62			1		AC021618, AC022517
S/G/Y/R/B/O	NT_011255		-		RH102577	19	33.36			0
S/G/Y/R/B/O	NT_011255		-		RH12331	19	31.92			1	AC008755, AC008895,	AC008755, AC008895
S/G/Y/R/B/O	NT_011255		-		RH39131	19	32.27			0
S/G/Y/R/B/O	NT_011255		-		RH41861	19	32.22			0
S/G/Y/R/B/O	NT_011255		-		RH47736	19	32.22			0	AC016586,	AC016586
S/G/Y/R/B/O	NT_011255		-		RH55742	19	33.56			1	AC011471,	AC011471
S/G/Y/R/B/O	NT_011255		-		RH55768	19	32.74			1	AC004410,	AC004410
S/G/Y/R/B/O	NT_011255		-		RH55772	19	32.74			1	AC004410,	AC004410
S/G/Y/R/B/O	NT_011255		-		RH71348	19	32.74			1	AC005263,	AC005263, K03474
S/G/Y/R/B/O	NT_011255		-		RH78245	19	32.43			0
S/G/Y/R/B/O	NT_011255		-		RH79570	19	32.64			0
S/G/Y/R/B/O	NT_011255		-		RH91513	19	32.22			0