Chromosome 19 - RH Maps - Single Contig

Chromosome 19 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_025920	NT_030867	NT_011227	NT_030171	NT_011277	NT_011269	NT_011268	NT_011258
NT_030869	NT_011271	NT_011255	NT_011274	NT_011316	NT_011145	NT_031917	NT_029485
NT_025133	NT_011176	NT_031915	NT_011151	NT_025155	NT_011290	NT_025130	NT_011281
NT_011141	NT_030861	NT_011288	NT_011295	NT_033318	NT_027203	NT_031920	NT_026483
NT_033317	NT_033315	NT_025183	NT_025175	NT_025197	NT_030182	NT_025922	NT_030862
NT_011196	NT_011294	NT_011296	NT_011192	NT_011233	NT_011250	NT_011139	NT_011266
NT_011109	NT_033313	NT_033316	NT_011091	NT_011148	NT_025184	NT_011225	NT_011150
NT_011104

NT_011091

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_011091	AC008655	64254888	3	RH80516	19	271.19			2	AC019157,	AC008655, AC019157
S/G/Y/R/B/O	NT_011091	AC008655	64327355	3	RH55725	19	272.69	19	347.10	1	AC073646,	AC073646
S/G/Y/R/B/O	NT_011091	AC020909	64362511	2	RH47504	19	272.79			1	AC073646,	AC020909, AC073646
S/G/Y/R/B/O	NT_011091	AC020909	64435322	2	RH65961	19	272.79			1	AC073646,	AC020909, AC073646
S/G/Y/R/B/O	NT_011091	AC020909	64452490	2	RH102046	19	270.99			1	AC008743,	AC008743, AC020909
S/G/Y/R/B/O	NT_011091	AC073646	64438435	1
S/G/Y/R/B/O	NT_011091	AC008743	64504277	3	RH74438	19	272.69			1		AC008743
S/G/Y/R/B/O	NT_011091	AC010325	64744496	2	RH10097	19	270.78			1		AC010325, AC027602
S/G/Y/R/B/O	NT_011091	AC011523	64801362	3	RH70617	19	275.75			1	AF243527,	AC011523, AC027602, AF243527, AF394907, M24543, M27274, U37672, X14810
S/G/Y/R/B/O	NT_011091	AC011523	64806256	3	RH55719	19	274.71	19	351.80	1	AF243527,	AC011523, AC027602, AF243527, M24543, M27274
S/G/Y/R/B/O	NT_011091	AC037199	64825064	3	RH76263	19	275.96			1	AF243527,	AC027602, AC037199, AF243527, M18157
S/G/Y/R/B/O	NT_011091	AC037199	64825356	3	RH71453	19	275.75			1	AF243527,	AC027602, AF243527, M18157
S/G/Y/R/B/O	NT_011091	AC037199	64835328	3	WI-5264			19	351.90	1	AF243527,	AC027602, AC037199, AF243527
S/G/Y/R/B/O	NT_011091	AF243527	64905265	3	RH55996	19	274.61	19	349.90	1		AC011483, AC027602, AF149289, AF243527
S/G/Y/R/B/O	NT_011091	AF243527	64961052	3	RH48452	19	274.81			1	AC011473,	AC011473, AF243527
S/G/Y/R/B/O	NT_011091	AC011473	65003340	3	RH92090	19	275.75			1		AC011473, AC073185, AF135024
S/G/Y/R/B/O	NT_011091	AC063977	65085458	2	CHLC.GAAT2D02			19	349.90	2		AC026638, AC063977
S/G/Y/R/B/O	NT_011091	AC063977	65186652	2	RH11526	19	275.75			2		AC026638, AC063977
S/G/Y/R/B/O	NT_011091	AC008750	65291715	3	RH11652	19	275.75			1		AC008750
S/G/Y/R/B/O	NT_011091	AC008750	65318149	3	RH55913	19	275.75			1		AC008750, AF305941
S/G/Y/R/B/O	NT_011091	AC008750	65318149	3	SGC35527			19	349.20	1		AC008750, AF305941
S/G/Y/R/B/O	NT_011091	AC020914	65416624	3
S/G/Y/R/B/O	NT_011091	AC018755	65557529	3	RH39061	19	275.75			1		AC018755
S/G/Y/R/B/O	NT_011091	AC018755	65692501	3	RH17955	19	276.90			1		L10820
S/G/Y/R/B/O	NT_011091	AC018755	65698369	3	RH69009	19	276.48			1		AC018755, L10820
S/G/Y/R/B/O	NT_011091	AC018755	65716270	3	RH55778	19	277.00	19	355.40	1		AC018755
S/G/Y/R/B/O	NT_011091	AC018755	65716288	3	RH11725	19	276.94			1		AC018755
S/G/Y/R/B/O	NT_011091	AC018755	65716830	3	RH39151	19	276.90			1		AC018755
S/G/Y/R/B/O	NT_011091	AC005946	65771244	3	RH71357	19	307.75			1	AC006272,	AC005946, AC006272
S/G/Y/R/B/O	NT_011091	AC005946	65772371	3	RH99009	19	277.00			1	AC006272,	AC005946, AC006272
S/G/Y/R/B/O	NT_011091	AC006272	65774704	3
S/G/Y/R/B/O	NT_011091	AC074141	65807031	3
S/G/Y/R/B/O	NT_011091	AC011460	65836612	3	WI-22544			19	356.50	1		AC011460
S/G/Y/R/B/O	NT_011091	AC011460	65836612	3	RH55850	19	307.87			1		AC011460
S/G/Y/R/B/O	NT_011091	AC011460	65838248	3	RH18492	19	278.55			1		AC011460
S/G/Y/R/B/O	NT_011091	AC011460	65892039	3	RH92372	19	278.55			1		AC011460
S/G/Y/R/B/O	NT_011091	AC011460	65911214	3	RH48568	19	278.44			1		AC011460
S/G/Y/R/B/O	NT_011091	AC011460	65911294	3	RH41908	19	277.83			1		AC011460
S/G/Y/R/B/O	NT_011091	AC011468	65975601	3	RH76071	19	303.80			1		AC011468
S/G/Y/R/B/O	NT_011091	AC011468	65977950	3	RH55773	19	277.00	19	356.40	1		AC011468
S/G/Y/R/B/O	NT_011091	AC011468	65996182	3	RH55694	19	277.76			1		AC011468
S/G/Y/R/B/O	NT_011091	AC011468	65996182	3	SGC30985			19	385.20	1		AC011468
S/G/Y/R/B/O	NT_011091	AC011468	66005189	3	RH103973	19	278.34			1		AC011468
S/G/Y/R/B/O	NT_011091	AC011468	66007143	3	RH16431	19	278.14			1		AC011468
S/G/Y/R/B/O	NT_011091	AC011468	66007266	3	RH26758	19	303.58			1		AC011468
S/G/Y/R/B/O	NT_011091	AC011468	66057900	3	SGC34059			19	356.50	1		AC011468
S/G/Y/R/B/O	NT_011091	AC011468	66057900	3	RH55734	19	308.44			1		AC011468
S/G/Y/R/B/O	NT_011091	AC011468	66057986	3	RH80165	19	277.83			1		AC011468
S/G/Y/R/B/O	NT_011091	AC011468	66060587	3	RH11971	19	278.34			1		AC011468
S/G/Y/R/B/O	NT_011091	AC011468	66061003	3	RH80131	19	307.64			1		AC011468

NT_011091 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_011091	AC011468	66106922	3	RH65995	19	278.34					1	AC010320,	AC010320, AC011468
S/G/Y/R/B/O	NT_011091	AC010320	66108312	3
S/G/Y/R/B/O	NT_011091	AC010332	66341859	3	RH48329	19	277.76					1		AC010332, AC021112, AC027474
S/G/Y/R/B/O	NT_011091	AC010506	66421556	3
S/G/Y/R/B/O	NT_011091	AC022150	66463190	3	RH9926	19	278.34					1		AC021112, AC021848, AC022150
S/G/Y/R/B/O	NT_011091	AC022150	66474890	3	RH48095	19	278.34					3	AC008813, AC010467, AC022137, AC024120,	AC008813, AC010467, AC021112, AC021848, AC022137, AC022150, AC024120
S/G/Y/R/B/O	NT_011091	AC022150	66515127	3	RH39137	19	278.55					1	AC024120,	AC021848, AC022150, AC024120
S/G/Y/R/B/O	NT_011091	AC022150	66515343	3	RH39179	19	278.07					5	AC008813, AC010487, AC022137, AC024120, AP004783,	AC008813, AC010487, AC021848, AC022137, AC022150, AC022150, AC024120, AP004783
S/G/Y/R/B/O	NT_011091	AC022150	66533411	3	RH55791	19	278.55					1	AC024120,	AC021848, AC022150, AC024120
S/G/Y/R/B/O	NT_011091	AC022150	66533411	3	WI-16992					19	382.30	1	AC024120,	AC021848, AC022150, AC024120
S/G/Y/R/B/O	NT_011091	AC022150	66546352	3	RH39179	19	278.07					5	AC008813, AC010487, AC022137, AC024120, AP004783,	AC008813, AC010487, AC021848, AC022137, AC022150, AC022150, AC024120, AP004783
S/G/Y/R/B/O	NT_011091	AC022150	66546446	3	RH79113	19	277.76					1	AC008813,	AC008813, AC021848, AC022150
S/G/Y/R/B/O	NT_011091	AC022150	66558933	3	RH32402			19	2755.00			1		AC021848, AC022150
S/G/Y/R/B/O	NT_011091	AC022150	66559011	3	RH26087	19	277.76					1		AC021848, AC022150
S/G/Y/R/B/O	NT_011091	AC022150	66559541	3	RH75637	19	276.38					2	AC024120,	AC021848, AC022150, AC024120
S/G/Y/R/B/O	NT_011091	AC008813	66680785	3	RH48095	19	278.34					3	AC010467, AC022137, AC022150, AC024120,	AC008813, AC010467, AC021112, AC021848, AC022137, AC022150, AC024120
S/G/Y/R/B/O	NT_011091	AC008813	66697209	3	WI-11361					19	356.50	1		AC008813
S/G/Y/R/B/O	NT_011091	AC008813	66697209	3	RH55787	19	308.68					1		AC008813
S/G/Y/R/B/O	NT_011091	AC008813	66712806	3	RH70673	19	277.93					1		AC008813
S/G/Y/R/B/O	NT_011091	AC008813	66740239	3	RH74439	19	278.55					1		AC008813
S/G/Y/R/B/O	NT_011091	AC008813	66760351	3	RH47139	14	22.67					2	AL049829, AL049829, AP004783,	AC008813, AL049829, AL049829, AP004783
S/G/Y/R/B/O	NT_011091	AC008813	66785176	3	RH17058	19	276.94					1	AP004783,	AC008813, AP004783
S/G/Y/R/B/O	NT_011091	AC010487	66823365	3	RH27067	19	303.47					1	AP004783,	AC010487, AP004783
S/G/Y/R/B/O	NT_011091	AC010487	66872188	3	RH39179	19	278.07					5	AC008813, AC022137, AC022150, AC022150, AC024120, AP004783,	AC008813, AC010487, AC021848, AC022137, AC022150, AC022150, AC024120, AP004783
S/G/Y/R/B/O	NT_011091	AC010487	66895003	3	RH39147	19	278.44					1	AP004783,	AP004783
S/G/Y/R/B/O	NT_011091	AC010487	66895958	3	RH39165	19	277.00					1	AC024120, AP004783,	AC010487, AC024120, AP004783
S/G/Y/R/B/O	NT_011091	AC010328	66914752	3	RH39186	19	278.44					1	AP004783,	AC010328, AP004783
S/G/Y/R/B/O	NT_011091	AC010328	66915465	3	RH39039	19	278.44					1	AP004783,	AC010328, AP004783
S/G/Y/R/B/O	NT_011091	AC010328	67013236	3	RH39109	19	278.44					1		AC010328
S/G/Y/R/B/O	NT_011091	AC010328	67015188	3	RH48199	19	277.93					2	AC092070,	AC010328, AC015589, AC092070
S/G/Y/R/B/O	NT_011091	AC010328	67054435	3	RH41763			19	2736.00			1		AC010328, AC015589
S/G/Y/R/B/O	NT_011091	AC010328	67054435	3	RH55818	19	308.56			19	383.10	1		AC010328, AC015589
S/G/Y/R/B/O	NT_011091	AC010328	67054668	3	RH10377	19	278.55					1		AC010328, AC015589
S/G/Y/R/B/O	NT_011091	AC010328	67055326	3	RH17322	19	278.34					1		AC010328, AC015589
S/G/Y/R/B/O	NT_011091	AC010328	67085862	3	RH39065	19	278.34					1		AC010328, AC015589
S/G/Y/R/B/O	NT_011091	AC010328	67086084	3	RH10802	19	278.34					1		AC010328, AC015589
S/G/Y/R/B/O	NT_011091	AP004783	67093425	1	RH39179	19	278.07					5	AC008813, AC010487, AC022137, AC022150, AC022150, AC024120,	AC008813, AC010487, AC021848, AC022137, AC022150, AC022150, AC024120, AP004783
S/G/Y/R/B/O	NT_011091		-		RH12308	19	275.75					0	AC018755,	AC018755
S/G/Y/R/B/O	NT_011091		-		RH8963			19	2742.00			0
S/G/Y/R/B/O	NT_011091		-		RH17676	19	276.43					0	AF243527,	AC027602, AF243527, M24543, M27274, X14810
S/G/Y/R/B/O	NT_011091		-		RH39192	19	278.34					0	AC010487, AP004783,	AC010487, AP004783
S/G/Y/R/B/O	NT_011091		-		RH48555	19	276.38					0	AC018755,	AC018755
S/G/Y/R/B/O	NT_011091		-		RH80489	19	278.34					0
S/G/Y/R/B/O	NT_011091		-		RH93828	19	278.55					0