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  Chromosome 19 - RH Maps - Single Contig
 

Chromosome 19 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_025920 NT_030867 NT_011227 NT_030171 NT_011277 NT_011269 NT_011268 NT_011258
NT_030869 NT_011271 NT_011255 NT_011274 NT_011316 NT_011145 NT_031917 NT_029485
NT_025133 NT_011176 NT_031915 NT_011151 NT_025155 NT_011290 NT_025130 NT_011281
NT_011141 NT_030861 NT_011288 NT_011295 NT_033318 NT_027203 NT_031920 NT_026483
NT_033317 NT_033315 NT_025183 NT_025175 NT_025197 NT_030182 NT_025922 NT_030862
NT_011196 NT_011294 NT_011296 NT_011192 NT_011233 NT_011250 NT_011139 NT_011266
NT_011109 NT_033313 NT_033316 NT_011091 NT_011148 NT_025184 NT_011225 NT_011150
NT_011104


  NT_011109
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_011109AC021291577755961          
S/G/Y/R/B/O NT_011109AC021092577913663RH10351619249.53    1 AC021092
S/G/Y/R/B/O NT_011109AC021092577913683RH3918719240.79    1 AC021092
S/G/Y/R/B/O NT_011109AC021092578163623RH10251619250.82    1AC074331, AC021092, AC074331
S/G/Y/R/B/O NT_011109AC021092578168273RH9264219250.72    1AC074331, AC021092, AC074331
S/G/Y/R/B/O NT_011109AC074331578386553RH1267  192270.00  1 AC074331
S/G/Y/R/B/O NT_011109AC074331578543983RH7881719250.10    1 AC074331
S/G/Y/R/B/O NT_011109AC074331578592643RH7499319238.63    1AC021291, AC021291, AC074331
S/G/Y/R/B/O NT_011109AC074331579188113RH5583919250.85  19330.901AC021291, AC021291, AC074331
S/G/Y/R/B/O NT_011109AC074331579568253RH5587519250.72  19331.501AC021291, AC021291, AC074331
S/G/Y/R/B/O NT_011109AC074331579569963RH10322619250.85    1AC021291, AC021291, AC074331
S/G/Y/R/B/O NT_011109AC092477579689773          
S/G/Y/R/B/O NT_011109AC084239579886993RH5585919250.82  19331.301AC021291, AC021291, AC084239
S/G/Y/R/B/O NT_011109AC084239579887453RH7823919250.85    1AC021291, AC021291, AC084239
S/G/Y/R/B/O NT_011109AC084239580084933RH3912219250.82    1AC021291, AC021291, AC084239
S/G/Y/R/B/O NT_011109AC084239580085363RH4614019250.85    1AC021291, AC021291, AC084239
S/G/Y/R/B/O NT_011109AC084239581081373RH33792  192274.00  1 AC011822, AC084239, AF025422
S/G/Y/R/B/O NT_011109AC069278581565343RH1270819250.85    1 AC011822, AC069278
S/G/Y/R/B/O NT_011109AC073898583167433RH6742719250.82    2AC013814, AC068948, AC013814, AC068948, AC073898, AC107203
S/G/Y/R/B/O NT_011109AC073898583167593RH3915219250.82    2AC013814, AC068948, AC013814, AC068948, AC073898, AC107203
S/G/Y/R/B/O NT_011109AC068948583433993RH5586019250.72192308.0019332.402AC013814, AC013814, AC068948, AC107203
S/G/Y/R/B/O NT_011109AC068948583434843RH7477919250.51    2AC013814, AC013814, AC068948, AC107203
S/G/Y/R/B/O NT_011109AC068948583459463RH3592919250.82    1AC013814, AC092066, AC013814, AC068948, AC092066, AC107203
S/G/Y/R/B/O NT_011109AC013814583474881          
S/G/Y/R/B/O NT_011109AC092066583635932RH3911619250.82    1AC013814, AC013814, AC092066
S/G/Y/R/B/O NT_011109AC021988584545621RH7621119250.82    1AC092066, AC021988, AC092066, U05681
S/G/Y/R/B/O NT_011109AC083983584869891RH6552819250.82    2AC021988, AC092066, AC092306, AC021988, AC083983, AC092066, AC092306
S/G/Y/R/B/O NT_011109AC092306585156103RH6552819250.82    2AC021988, AC083983, AC092066, AC021988, AC083983, AC092066, AC092306
S/G/Y/R/B/O NT_011109AC092306585314513RH9167019250.75    1AC021988, AC021988, AC092306
S/G/Y/R/B/O NT_011109AC092306585324613RH8107819250.72    1AC021988, AC021988, AC092306
S/G/Y/R/B/O NT_011109AC092306585324903RH9146319250.82    1AC021988, AC021988, AC092306
S/G/Y/R/B/O NT_011109AC093232585429113          
S/G/Y/R/B/O NT_011109AC011481585898643RH13875  192327.00  1AC021988, AC083983, AC011481, AC021988, AC083983
S/G/Y/R/B/O NT_011109AC011481585901053RH2615719250.75    1AC021988, AC083983, AC011481, AC021988, AC083983
S/G/Y/R/B/O NT_011109AC011481586003313RH9434419250.75    2AC021988, AC026009, AC083983, AC092916, AC011481, AC021988, AC026009, AC055748, AC083983, AC092916, AF050154
S/G/Y/R/B/O NT_011109AC011481586201413RH3910819244.69    1AC021988, AC011481, AC021988, AF050154, AF261279, M10065
S/G/Y/R/B/O NT_011109AC011481586203553RH1147019250.72    1AC021988, AC011481, AC021988, AF050154, AF261279, M10065
S/G/Y/R/B/O NT_011109AC011481586204513RH3907619250.75    1AC021988, AC011481, AC021988, AF050154, AF261279, M10065
S/G/Y/R/B/O NT_011109AC011481586423233RH3908419250.82    1 AC011481, M20903
S/G/Y/R/B/O NT_011109AC011481586565653RH4655119250.55    1 AC011481, U32576
S/G/Y/R/B/O NT_011109AC011481586566253RH1839819250.75    1 AC011481, U32576
S/G/Y/R/B/O NT_011109AC011481586585773RH3630519250.75    1 AC011481, J02698, M10612, X05151
S/G/Y/R/B/O NT_011109AF037338587043853RH9148719250.82    1AC011489, AC011489, AF037338
S/G/Y/R/B/O NT_011109AC011489587490653RH5587019250.55  19331.001 AC011489
S/G/Y/R/B/O NT_011109AC011489588020273RH1183  192343.00  1 AC011489
S/G/Y/R/B/O NT_011109AC005757588584023RH9873719250.82    1 AC005757
S/G/Y/R/B/O NT_011109AC005757588610993RH7502319250.55    1 AC005757
S/G/Y/R/B/O NT_011109AC005757588742803RH7560219250.85    1 AC005757
S/G/Y/R/B/O NT_011109AC005779588929283RH4838819250.85    1 AC005779
S/G/Y/R/B/O NT_011109AC093064589195293          


  NT_011109 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_011109AC006126589212673          
S/G/Y/R/B/O NT_011109AC005581589659513          
S/G/Y/R/B/O NT_011109AC005781590059913RH3907119253.85    1  
S/G/Y/R/B/O NT_011109AC005781590060773RH4570219250.55    1 AC005781, AC023329
S/G/Y/R/B/O NT_011109AC005781590143683RH5568819254.05  19331.101 AC005781, AC023329
S/G/Y/R/B/O NT_011109AC005781590146923RH5570519250.62    1 AC005781, AC023329
S/G/Y/R/B/O NT_011109AC005781590146923WI-8030    19321.501 AC005781, AC023329
S/G/Y/R/B/O NT_011109AC005781590147303RH1688019255.09    1 AC005781, AC023329
S/G/Y/R/B/O NT_011109AC005781590147603RH7999  192338.00  1 AC005781, AC023329
S/G/Y/R/B/O NT_011109AC005781590177393RH8090819254.36    1 AC005781, AC023329
S/G/Y/R/B/O NT_011109AC005781590177833RH6907419255.09    1 AC005781, AC023329
S/G/Y/R/B/O NT_011109AC005781590178413RH7619519253.95    1 AC005781, AC023329
S/G/Y/R/B/O NT_011109AC112705590420773          
S/G/Y/R/B/O NT_011109L47234590613363RH10324519254.16    1 AC023329, L47234
S/G/Y/R/B/O NT_011109L47234590627923RH8085819250.82    1 AC023329, L47234
S/G/Y/R/B/O NT_011109L47234590901773RH3919119253.85    1AC092309, AC092309, L47234
S/G/Y/R/B/O NT_011109AC092309590989151          
S/G/Y/R/B/O NT_011109M63796591178093RH3913819255.09    1AC092309, AC092309, M63796
S/G/Y/R/B/O NT_011109M63796591240243RH4703319250.62    1 M63796
S/G/Y/R/B/O NT_011109AC093073591491253          
S/G/Y/R/B/O NT_011109M89651591822183RH4653919250.55    1 M89651
S/G/Y/R/B/O NT_011109M89651591834223RH5570919250.55  19330.901 M89651
S/G/Y/R/B/O NT_011109M89651591852203RH7983  192347.00  1 M89651
S/G/Y/R/B/O NT_011109M89651592007303RH1523319252.34    1 M89651
S/G/Y/R/B/O NT_011109AC006117592177613          
S/G/Y/R/B/O NT_011109AC006261592596613RH6676519250.82    1 AC006261
S/G/Y/R/B/O NT_011109AC011480593009813RH5575319250.62    1 U21051
S/G/Y/R/B/O NT_011109AC011480593009813SGC35535    19322.201 U21051
S/G/Y/R/B/O NT_011109AC011480593014303RH7061119250.51    1 AC011480, U21051
S/G/Y/R/B/O NT_011109AC011480593198963RH4830619250.85    1 AC011480
S/G/Y/R/B/O NT_011109AC011480593479823RH4654119250.55    1 AC011480
S/G/Y/R/B/O NT_011109AC098776593492253          
S/G/Y/R/B/O NT_011109AC006132593923823RH33643  192352.00  1AC007191, AC006132, AC007191
S/G/Y/R/B/O NT_011109AC006132593923893RH7062319253.85    1AC007191, AC006132, AC007191
S/G/Y/R/B/O NT_011109AC007191593926833RH7915119250.85    1 AC007191
S/G/Y/R/B/O NT_011109AC007191593978963RH7965919254.05    2AL390206, AC007191, AL390206
S/G/Y/R/B/O NT_011109AC007774594338733          
S/G/Y/R/B/O NT_011109AC074212594753403RH3909619252.24    1AC011530, AC011530, AC074212, X84813
S/G/Y/R/B/O NT_011109AC074212594801733RH1144019252.34    1AC011530, AC011530, AC074212, L00727, L08835
S/G/Y/R/B/O NT_011109AC011530594944163RH7804919252.34    1 AC011530, L08835
S/G/Y/R/B/O NT_011109AC092301595259683RH1165519252.34    1 AC092301
S/G/Y/R/B/O NT_011109AC008623595837383RH1789219255.50    1 AC008623
S/G/Y/R/B/O NT_011109AC008623595838853RH5583819254.46  19333.301 AC008623
S/G/Y/R/B/O NT_011109AC008623595940673RH5570719254.26  19333.501 AC008623
S/G/Y/R/B/O NT_011109AC008623596005773RH2624419252.34    1 AC008623
S/G/Y/R/B/O NT_011109AC008623596467893RH5588219252.04  19333.301 AC008623
S/G/Y/R/B/O NT_011109AC008623596468383RH3681319252.34    1 AC008623
S/G/Y/R/B/O NT_011109AC008623596494673RH5572019252.24  19334.401AC006540, AC006540, AC008623
S/G/Y/R/B/O NT_011109AC006540596667283          
S/G/Y/R/B/O NT_011109AC011545596822953          


  NT_011109 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_011109AC007785597954013RH7481919252.34    1 AC007785
S/G/Y/R/B/O NT_011109AC006262599273373RH3579819255.50    1 AC006262
S/G/Y/R/B/O NT_011109AC006262599414283RH6580319252.24    1 AC006262
S/G/Y/R/B/O NT_011109AC007193600487273RH7562519255.56    1 AC007193
S/G/Y/R/B/O NT_011109AC007193600523093RH6849019255.29    1 AC007193
S/G/Y/R/B/O NT_011109AC007193600536423RH1019419255.50    1 AC007193
S/G/Y/R/B/O NT_011109AC024584601120603WI-5294    19334.501 AC024584
S/G/Y/R/B/O NT_011109AC011484601769223RH8656  192356.00  1 AC011484
S/G/Y/R/B/O NT_011109AC011484601769373RH2577819254.46    1 AC011484
S/G/Y/R/B/O NT_011109AC011484602022493RH5583519252.34  19336.601 AC011484
S/G/Y/R/B/O NT_011109AC011484602022503RH5570619252.24  19334.401 AC011484
S/G/Y/R/B/O NT_011109AC011484602066873RH7538619254.67    1 AC011484
S/G/Y/R/B/O NT_011109AC011484602180933RH5571519255.92    1 AC011484
S/G/Y/R/B/O NT_011109AC011484602180933D19S412    19343.501 AC011484
S/G/Y/R/B/O NT_011109AC011484602181313RH1104  192361.00  1 AC011484
S/G/Y/R/B/O NT_011109AC011551602403983          
S/G/Y/R/B/O NT_011109AC093503603209643RH1151919254.26    1 AC025983, AC093503, X52608
S/G/Y/R/B/O NT_011109AC093503603312863RH2015  192377.00  1 AC025983, AC093503
S/G/Y/R/B/O NT_011109AC093503603581583RH9909519256.66    1 AC025983, AC093503
S/G/Y/R/B/O NT_011109AC093503603847283RH8779  192372.00  1AC008635, AC008635, AC025983, AC093503
S/G/Y/R/B/O NT_011109AC093503603847463RH2613319255.98    1AC008635, AC008635, AC025983, AC093503
S/G/Y/R/B/O NT_011109AC008635604299383RH2612019254.88    1AC008622, AC008622, AC008635, AC025983
S/G/Y/R/B/O NT_011109AC008635604299523RH1187819256.66    1AC008622, AC008622, AC008635, AC025983
S/G/Y/R/B/O NT_011109AC008622604686623RH2658019254.74    1 AC008622, AC025983
S/G/Y/R/B/O NT_011109AC008622605292923WI-10595    19336.201AC027709, AC008622, AC027709
S/G/Y/R/B/O NT_011109AC008622605485893RH8052219254.67    1AC027709, AC008622, AC027709
S/G/Y/R/B/O NT_011109AC008622605486473RH4704319254.67    1AC027709, AC008622, AC027709
S/G/Y/R/B/O NT_011109AC008895605845413RH3620819256.66    1 AC008895
S/G/Y/R/B/O NT_011109AC008895605920613RH74640  192382.00  2AC027709, AC008895, AC027709
S/G/Y/R/B/O NT_011109AC008895606382843RH6844419264.72    1 AC008895
S/G/Y/R/B/O NT_011109AC008895606913453RH123311931.92    1AC008755, AC008755, AC008895
S/G/Y/R/B/O NT_011109AC008895606914003RH1591819255.29    1AC008755, AC008755, AC008895
S/G/Y/R/B/O NT_011109AC008755607115653RH3910119264.83    1 AC008755
S/G/Y/R/B/O NT_011109AC008755607115943RH6785519265.62    1 AC008755
S/G/Y/R/B/O NT_011109AC008755607143093RH7796219266.47    1 AC008755
S/G/Y/R/B/O NT_011109AC008755607747033RH4841019264.83    1 AC008755, AC024443
S/G/Y/R/B/O NT_011109AC008755607940913RH1643419264.83    1 AC008755
S/G/Y/R/B/O NT_011109AC008755608182923RH9275019263.81    1 AC008755, AC024443
S/G/Y/R/B/O NT_011109AC008532609003053RH9431819264.83    1 AC008532, AC024443
S/G/Y/R/B/O NT_011109AC008532609207703RH5585619264.83    1 AC008532
S/G/Y/R/B/O NT_011109AC008532609207703WI-22443    19343.101 AC008532
S/G/Y/R/B/O NT_011109AC008532609208563RH10342919264.83    1 AC008532
S/G/Y/R/B/O NT_011109AC008532609315013RH7071019265.62    1 AC008532
S/G/Y/R/B/O NT_011109AC099491610117683          
S/G/Y/R/B/O NT_011109AC008754610927063RH6839619264.83    1AC073548, AC008754, AC073548, AC093236
S/G/Y/R/B/O NT_011109AC073548611480642RH5569319265.19    1 AC073548
S/G/Y/R/B/O NT_011109AC073548611480642WI-13762    19343.101 AC073548
S/G/Y/R/B/O NT_011109AC073548611891462WI-19404    19337.901 AC073548
S/G/Y/R/B/O NT_011109AC073548611891462RH5600119267.11    1 AC073548
S/G/Y/R/B/O NT_011109AC073548611892192RH6626419264.55    1 AC073548


  NT_011109 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_011109AC073548611897082RH7443719259.93    1 AC073548
S/G/Y/R/B/O NT_011109AC073548611945562RH5591019263.81192435.00  1 AC073548, AF243529
S/G/Y/R/B/O NT_011109AC073548611945562NIB719    19342.201 AC073548, AF243529
S/G/Y/R/B/O NT_011109AC073548612071652RH1593419265.19    1 AC073548
S/G/Y/R/B/O NT_011109AC073548612155532RH3914119265.94    1 AC073548
S/G/Y/R/B/O NT_011109AC027709611369061RH74640  192382.00  2AC008895, AC008895, AC027709
S/G/Y/R/B/O NT_011109AC016589612401313RH9155219264.02    1AC073548, AC016589, AC073548
S/G/Y/R/B/O NT_011109AC016589612401323RH7652919264.23    1AC073548, AC016589, AC073548
S/G/Y/R/B/O NT_011109AC010331612471083          
S/G/Y/R/B/O NT_011109AC104531613561193          
S/G/Y/R/B/O NT_011109AC008985613655163          
S/G/Y/R/B/O NT_011109AC010519614223873RH4845819266.31    1 AC010519, AC093324
S/G/Y/R/B/O NT_011109AC008745614622833RH5591719266.73  19343.101 AC008745
S/G/Y/R/B/O NT_011109AC008745614697893RH6560619266.52    1 AC008745
S/G/Y/R/B/O NT_011109AC008745615037043RH5586619265.19    1 AC008745
S/G/Y/R/B/O NT_011109AC008745615037043WI-20785    19343.101 AC008745
S/G/Y/R/B/O NT_011109AC008745615038203RH14254  192451.00  1 AC008745
S/G/Y/R/B/O NT_011109AC008745615038933RH4179819264.93    1 AC008745
S/G/Y/R/B/O NT_011109AC008745615362253WI-5375    19343.701 AC008745
S/G/Y/R/B/O NT_011109AC008745615624613RH7818319266.47    1AC024582, AC008745, AC024582
S/G/Y/R/B/O NT_011109AC008745615898973RH3918019264.23    1AC024582, AC008745, AC024582
S/G/Y/R/B/O NT_011109AC008745615907573RH1157419264.02    1AC024582, AC008745, AC024582
S/G/Y/R/B/O NT_011109AC008745615907743RH14160  192453.00  1AC024582, AC008745, AC024582
S/G/Y/R/B/O NT_011109AC024582616197031          
S/G/Y/R/B/O NT_011109 - RH10235819255.29    1AC008392, AC020955, AC008392, AC020955, AC027218, AC073131
S/G/Y/R/B/O NT_011109 - RH10253919253.85    0AC006126, AC006126
S/G/Y/R/B/O NT_011109 - RH10321319255.29    1AC026803, AC008749, AC024740, AC026803
S/G/Y/R/B/O NT_011109 - RH1156819264.23    0  
S/G/Y/R/B/O NT_011109 - RH1233319264.83    1AC016586, AC027272, AC016586, AC027272
S/G/Y/R/B/O NT_011109 - RH1596719253.85    0  
S/G/Y/R/B/O NT_011109 - RH3916119264.02    0 AC093236
S/G/Y/R/B/O NT_011109 - RH4623719250.55    0AC005581, AC005581
S/G/Y/R/B/O NT_011109 - RH4770419250.35    0AC011489, AC011489
S/G/Y/R/B/O NT_011109 - RH4880719250.82    0  
S/G/Y/R/B/O NT_011109 - RH5578119250.82  19331.301 AC107203
S/G/Y/R/B/O NT_011109 - RH5582219255.29    1AC011514, AC011514, AC027218
S/G/Y/R/B/O NT_011109 - RH5590719255.29    1AC010458, AC011466, AC010458, AC011212, AC011466
S/G/Y/R/B/O NT_011109 - RH5591919255.29    1AC022154, AC022154, AC040922
S/G/Y/R/B/O NT_011109 - RH5597519255.40    1AC022154, AB061825, AC022154, AC040922
S/G/Y/R/B/O NT_011109 - RH5598119255.29    0AC008755, AC008755
S/G/Y/R/B/O NT_011109 - RH6537919254.74    0  
S/G/Y/R/B/O NT_011109 - RH6613519250.55    0AC013814, AC068948, AC013814, AC068948
S/G/Y/R/B/O NT_011109 - RH7488219254.56    0  
S/G/Y/R/B/O NT_011109 - RH7849919250.82    0  
S/G/Y/R/B/O NT_011109 - RH9144919250.82    0  
S/G/Y/R/B/O NT_011109 - RH9148819255.29    1AC107976, AC107976
S/G/Y/R/B/O NT_011109 - RH9291919252.34    0  
S/G/Y/R/B/O NT_011109 - RH9333219255.29    1AC011466, AC011212, AC011466
S/G/Y/R/B/O NT_011109 - RH9345919250.85    0  
S/G/Y/R/B/O NT_011109 - RH9438519250.85    0  


  NT_011109 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_011109 - RH9884019250.85    0