Chromosome 19 - RH Maps - Single Contig

Chromosome 19 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_025920	NT_030867	NT_011227	NT_030171	NT_011277	NT_011269	NT_011268	NT_011258
NT_030869	NT_011271	NT_011255	NT_011274	NT_011316	NT_011145	NT_031917	NT_029485
NT_025133	NT_011176	NT_031915	NT_011151	NT_025155	NT_011290	NT_025130	NT_011281
NT_011141	NT_030861	NT_011288	NT_011295	NT_033318	NT_027203	NT_031920	NT_026483
NT_033317	NT_033315	NT_025183	NT_025175	NT_025197	NT_030182	NT_025922	NT_030862
NT_011196	NT_011294	NT_011296	NT_011192	NT_011233	NT_011250	NT_011139	NT_011266
NT_011109	NT_033313	NT_033316	NT_011091	NT_011148	NT_025184	NT_011225	NT_011150
NT_011104

NT_011145

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_011145	AC010606	7837810	1	RH39185	19	41.59					1		AC010606, AC092305
S/G/Y/R/B/O	NT_011145	AC010606	7837812	1	RH47261	19	43.64					1		AC010606, AC092305
S/G/Y/R/B/O	NT_011145	AC022146	8194775	1	RH55760	19	52.59			19	38.80	1		AC010323, AC022146
S/G/Y/R/B/O	NT_011145	AC092304	7786465	1
S/G/Y/R/B/O	NT_011145	AC010311	7861633	3	RH92589	19	41.65					1	AC010606,	AC010311, AC010606, L07782
S/G/Y/R/B/O	NT_011145	AC010311	7865486	3	RH93377	19	41.65					1	AC010606,	AC010311, AC010606, L07782
S/G/Y/R/B/O	NT_011145	AC010311	7866121	3	RH75943	19	41.55					1	AC010606,	AC010311, AC010606
S/G/Y/R/B/O	NT_011145	AC010311	7912335	3	RH32544			19	232.00			1		AC010311
S/G/Y/R/B/O	NT_011145	AC010311	7916355	3	RH80156	19	41.45					1		AC010311
S/G/Y/R/B/O	NT_011145	AC010526	7952210	3	RH66229	19	41.03					1		AC010526
S/G/Y/R/B/O	NT_011145	AC010324	7955630	1
S/G/Y/R/B/O	NT_011145	AC114799	8131371	1
S/G/Y/R/B/O	NT_011145	AC092310	8215964	3	RH36281	19	52.81					1
S/G/Y/R/B/O	NT_011145	AC092310	8225237	3	RH77704	19	52.59					1	AC022146,	AC010323, AC022146, AC092310, AC093233
S/G/Y/R/B/O	NT_011145	AC092310	8235905	3	RP_S28_1					19	38.80	1		AB061846, AC010323, AC092310, AC093233
S/G/Y/R/B/O	NT_011145	AC092310	8235905	3	RH55660	19	53.99					1		AB061846, AC010323, AC092310, AC093233
S/G/Y/R/B/O	NT_011145	AC092310	8236392	3	RH55775	19	52.59			19	37.50	1		AB061846, AC010323
S/G/Y/R/B/O	NT_011145	AC092310	8236486	3	RH78597	19	52.59					1		AB061846, AC010323, AC092310, AC093233
S/G/Y/R/B/O	NT_011145	AC092310	8236675	3	RH55873	19	52.59			19	37.40	1		AC010323, AC092310, AC093233
S/G/Y/R/B/O	NT_011145	AC008878	8347111	2	RH28608	19	41.65					1		AC008878
S/G/Y/R/B/O	NT_011145	AC008878	8347288	2	RH78224	19	41.86					1		AC008878
S/G/Y/R/B/O	NT_011145	AC008878	8348593	2	RH55713	19	52.06					1		AC008878
S/G/Y/R/B/O	NT_011145	AC008878	8348593	2	WI-14772					19	23.50	1		AC008878
S/G/Y/R/B/O	NT_011145	AC008878	8353427	2	RH104314	19	41.65					1		AC008878
S/G/Y/R/B/O	NT_011145	AC008878	8384774	2	RH104354	19	41.03					1	AC021153,	AC008878, AC021153
S/G/Y/R/B/O	NT_011145	AC008878	8397242	2	RH68764	19	40.39					1	AC021153,	AC008878, AC021153
S/G/Y/R/B/O	NT_011145	AC009003	8410089	3	RH91529	19	41.65					1	AC008878, AC021153,	AC008878, AC009003, AC021153, AF287270
S/G/Y/R/B/O	NT_011145	AC009003	8438082	3	RH11760	19	43.64					1	AC021153,	AC009003, AC021153
S/G/Y/R/B/O	NT_011145	AC021153	8444860	1
S/G/Y/R/B/O	NT_011145	AC008763	8493792	2	RH55815	19	48.69			19	33.90	1		AC008763
S/G/Y/R/B/O	NT_011145	AC008763	8493824	2	RH47063	19	51.09					1	AC021153,	AC008763, AC021153
S/G/Y/R/B/O	NT_011145	AC008763	8558667	2	RH47627	19	48.40					1		AC008763
S/G/Y/R/B/O	NT_011145	AC008763	8558672	2	RH41788	19	51.30					1		AC008763
S/G/Y/R/B/O	NT_011145	AC008763	8564989	2	RH76194	19	49.92					1		AC008763
S/G/Y/R/B/O	NT_011145	AC008812	8600333	3	AFMA134XB9					19	33.80	1	AC008763,	AC008763, AC008812
S/G/Y/R/B/O	NT_011145	AC008812	8616005	3	RH98479	19	49.74					1	AC008763,	AC008763, AC008812
S/G/Y/R/B/O	NT_011145	AC008812	8616382	3	RH76073	19	48.40					1	AC008763,	AC008763, AC008812
S/G/Y/R/B/O	NT_011145	AC008812	8666833	3	RH66629	19	48.71					1		AC008812, AC024700
S/G/Y/R/B/O	NT_011145	AC008812	8682755	3	RH74436	19	46.06					1		AC008812, AC024700
S/G/Y/R/B/O	NT_011145	AC010336	8740732	3	RH35995	19	50.56					1		AC024700
S/G/Y/R/B/O	NT_011145	AC010336	8780831	3	RH55971	19	50.77			19	28.10	1		AC010336, AC024700
S/G/Y/R/B/O	NT_011145	AC010336	8798833	3	RH98907	19	50.56					1		AC010336, AC024700
S/G/Y/R/B/O	NT_011145	AC010336	8835133	3	RH25082	19	52.59					1		AC010336
S/G/Y/R/B/O	NT_011145	AC010336	8835188	3	RH55750	19	52.54					1		AC010336
S/G/Y/R/B/O	NT_011145	AC010336	8836681	3	RH25126	19	52.70					1		AC010336
S/G/Y/R/B/O	NT_011145	AC010336	8838372	3	RH55840	19	52.59			19	36.90	1		AC010336
S/G/Y/R/B/O	NT_011145	AC010336	8838372	3	RH33200			19	202.00			1		AC010336
S/G/Y/R/B/O	NT_011145	AC008975	8855553	3
S/G/Y/R/B/O	NT_011145	AC008946	8883789	3
S/G/Y/R/B/O	NT_011145		-		RH11623	19	52.59					0		AC010323

NT_011145 (cont)

Links	Contig	Chr Start	STS Marker	GM Chr	GM99 GB4	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_011145	-	RH36223	19	49.21	0
S/G/Y/R/B/O	NT_011145	-	RH47612	19	52.59	0		AC010323
S/G/Y/R/B/O	NT_011145	-	RH65754	19	50.77	0
S/G/Y/R/B/O	NT_011145	-	RH76399	19	41.45	0	Z84497, Z96104,	AC011086, AL645941, AL662845, AL671924, X96670, Z84497, Z96104
S/G/Y/R/B/O	NT_011145	-	RH80162	19	41.45	1	AL353768,	AC022185, AL353768
S/G/Y/R/B/O	NT_011145	-	RH80210	19	52.59	1	AC008760, AC025343,	AC008760, AC025343
S/G/Y/R/B/O	NT_011145	-	RH80512	19	52.16	0	AC008878, AC009003, AC021153,	AC008878, AC009003, AC021153, AF287270