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  Chromosome 9 - RH Maps - Single Contig
 

Chromosome 9 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_033218 NT_008413 NT_027081 NT_023974 NT_030040 NT_033214 NT_030759 NT_030753
NT_033213 NT_033210 NT_008389 NT_033219 NT_033217 NT_029359 NT_033209 NT_033206
NT_033208 NT_033212 NT_033205 NT_033203 NT_031832 NT_033211 NT_033207 NT_008580
NT_023935 NT_028278 NT_023975 NT_023946 NT_023932 NT_024010 NT_033202 NT_008476
NT_033216 NT_008470 NT_008438 NT_017568 NT_029366 NT_008338 NT_031835 NT_017539
NT_008554 NT_023969 NT_030058 NT_019501 NT_033215 NT_024000 NT_023929 NT_023989


  NT_008476
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_008476AC074086818887211          
S/G/Y/R/B/O NT_008476AL583841818948263RH667689303.18    1 AL583841
S/G/Y/R/B/O NT_008476AL583841820541823RH921649303.41    1AC074086, AC074086, AL583841
S/G/Y/R/B/O NT_008476AL391219821951223RH104649315.93    1 AL391219
S/G/Y/R/B/O NT_008476AL354751822394863WI-2820    9349.201 AL354751
S/G/Y/R/B/O NT_008476AL136097823745403RH174039304.09    1 AC016844, AL136097
S/G/Y/R/B/O NT_008476AL136097824030303RH33084  92975.00  1 AC016844, AL136097, AL354924
S/G/Y/R/B/O NT_008476AL136097824044413RH32190  93001.00  1 AC016844, AL136097, AL354924
S/G/Y/R/B/O NT_008476AL136097824192513RH692699303.37    1 AC016844, AL136097
S/G/Y/R/B/O NT_008476AL137848825489673RH364689304.09    1 AL137848, AL354924
S/G/Y/R/B/O NT_008476AL137848825788543RH403919304.09    1 AB009589, AL137848
S/G/Y/R/B/O NT_008476AL137848826200693RH8797  92994.00  1 AL137848
S/G/Y/R/B/O NT_008476AL137848826201403RH360069304.60    1 AL137848
S/G/Y/R/B/O NT_008476AL137848826225313RH630459305.4292979.009348.701 AL137848
S/G/Y/R/B/O NT_008476AL137848826226853RH403519304.09    1 AL137848
S/G/Y/R/B/O NT_008476AL137848826251503RH8781  92979.00  1 AL137848
S/G/Y/R/B/O NT_008476AL137848826526343RH683989316.42    1AL157827, AC025394, AL137848, AL157827
S/G/Y/R/B/O NT_008476AL137848826591783RH629469305.4292977.009348.701AL157827, AC025394, AL137848, AL157827
S/G/Y/R/B/O NT_008476AL137848826591953RH474329304.81    1AL157827, AC025394, AL137848, AL157827
S/G/Y/R/B/O NT_008476AL137848826601083RH697549304.09    1 AL137848
S/G/Y/R/B/O NT_008476AL157827827766023RH628439305.42  9348.701 AC025394, AL157827
S/G/Y/R/B/O NT_008476AL157827827769523RH655179304.09    1 AL157827
S/G/Y/R/B/O NT_008476AL157827827784213RH628809304.09  9344.801 AC025394, AL157827
S/G/Y/R/B/O NT_008476AL157827827841443RH755019316.04    1 AC025394, AL157827
S/G/Y/R/B/O NT_008476AL137074828220503RH630359304.0992999.009344.801 AL137074
S/G/Y/R/B/O NT_008476AL137074828221623RH165799305.42    1 AL137074
S/G/Y/R/B/O NT_008476AL137074828752673RH983079304.09    1 AL137074
S/G/Y/R/B/O NT_008476AL137074828757273RH631889305.42  9348.601 AL137074
S/G/Y/R/B/O NT_008476AL137074828765953RH107449304.09    1 AL137074
S/G/Y/R/B/O NT_008476AL136981829569973RH653449305.42    1 AL136981
S/G/Y/R/B/O NT_008476AL136981829976903RH782259307.02    1 AL136981
S/G/Y/R/B/O NT_008476AL136981830020713RH485619307.02    1 AL136981
S/G/Y/R/B/O NT_008476AL389924830765043          
S/G/Y/R/B/O NT_008476AL451065831998583RH404189305.49    1 AL451065
S/G/Y/R/B/O NT_008476AL451065832394933RH453869305.42    1 AL451065
S/G/Y/R/B/O NT_008476AL451065832486603RH1034849305.42    1 AL451065
S/G/Y/R/B/O NT_008476AL451065832853613RH418119305.42    1AL390760, AL390760, AL451065
S/G/Y/R/B/O NT_008476AL390760833085953          
S/G/Y/R/B/O NT_008476AL354991834386623          
S/G/Y/R/B/O NT_008476AL583839834769233RH627139305.32  9347.701 AL583839
S/G/Y/R/B/O NT_008476AL583839834820473RH631769305.39  9347.702AC022082, AC022082, AL583839
S/G/Y/R/B/O NT_008476AL583839834828123RH629969305.42  9346.202AC022082, AC022082, AL583839
S/G/Y/R/B/O NT_008476AL583839834828773RH663069305.42    2AC022082, AC022082, AL583839
S/G/Y/R/B/O NT_008476AL583839836047333WI-2958    9346.202AC022082, AC022082, AL583839
S/G/Y/R/B/O NT_008476AL583839836100503RH631449305.4993047.009347.401 AC007526, AL583839
S/G/Y/R/B/O NT_008476AL583839836104413RH629409305.39  9346.201AL353629, AL353629, AL583839
S/G/Y/R/B/O NT_008476AL583839836104993RH181799305.42    1AL353629, AL353629, AL583839
S/G/Y/R/B/O NT_008476AL353629836611213RH628819305.52  9347.401 AL353629
S/G/Y/R/B/O NT_008476AL353629836662753D9S197    9346.201 AL353629
S/G/Y/R/B/O NT_008476AL353629836949643RH631819308.44  9348.601 AL353629


  NT_008476 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_008476AL353629836962143RH940229307.02    1 AL353629
S/G/Y/R/B/O NT_008476AL359181838432063RH442809308.65    1 AL359181
S/G/Y/R/B/O NT_008476AL359181838755853RH134479307.0293130.00  1 AL359181
S/G/Y/R/B/O NT_008476AL442224839445843          
S/G/Y/R/B/O NT_008476AL357073840455411          
S/G/Y/R/B/O NT_008476AL360020842042332RH665139307.02    1AL357073, AL353226, AL357073, AL360020
S/G/Y/R/B/O NT_008476AL360020842717262RH185319308.44    1AC083821, AC087784, AC007924, AC083821, AC087784, AL360020
S/G/Y/R/B/O NT_008476AL360020842734892RH630669307.02  9348.901AC083821, AC087784, AC007924, AC083821, AC087784, AL360020
S/G/Y/R/B/O NT_008476AL360020842735072RH459309307.02    1AC083821, AC087784, AC007924, AC083821, AC087784, AL360020
S/G/Y/R/B/O NT_008476AL158152843318793RH283839307.02    1AC087784, AC007924, AC087784, AL158152
S/G/Y/R/B/O NT_008476AL158152843424343RH266589305.42    1AC083821, AC087784, AC007924, AC083821, AC087784, AL158152
S/G/Y/R/B/O NT_008476AL158152843429153RH940179307.02    1AC083821, AC087784, AC007924, AC083821, AC087784, AL158152
S/G/Y/R/B/O NT_008476AL669815844164353          
S/G/Y/R/B/O NT_008476AL691447844652781RH631839307.0293078.009348.901 AL160055, AL691447
S/G/Y/R/B/O NT_008476AL691447844667261RH365679308.44    1 AL160055, AL691447
S/G/Y/R/B/O NT_008476AL691447844746651WI-5442    9350.101 AL160055, AL691447
S/G/Y/R/B/O NT_008476AL691447844935551RH14795  93148.00  2AL158827, AC009485, AL158827, AL160055, AL691447
S/G/Y/R/B/O NT_008476AL691447844937071RH628749307.02  9349.402AL158827, AC009485, AL158827, AL160055, AL691447
S/G/Y/R/B/O NT_008476AL691447845088941RH403959313.03    2AL158827, AC009485, AL158827, AL160055, AL691447
S/G/Y/R/B/O NT_008476AL691447845293801RH164269313.03    2AL158827, AL158827, AL160055
S/G/Y/R/B/O NT_008476AC083821844772661          
S/G/Y/R/B/O NT_008476AC087784844855211          
S/G/Y/R/B/O NT_008476AL358232845985283RH485139308.44    2AL158827, AL691447, AL158827, AL160055, AL358232, AL691447
S/G/Y/R/B/O NT_008476AL358232845985283RH485769308.44    2AL158827, AL691447, AC009485, AL158827, AL160055, AL358232, AL691447
S/G/Y/R/B/O NT_008476AL358232846383663RH630799308.6093113.009349.601 AC068317, AL358232
S/G/Y/R/B/O NT_008476AL358232846386163RH776919305.42    1 AC068317, AL358232
S/G/Y/R/B/O NT_008476AL358232846388443RH629639305.32  9348.701 AL358232
S/G/Y/R/B/O NT_008476AL358232846390193RH649099307.02    1 AL358232
S/G/Y/R/B/O NT_008476AL358232846390683RH286769307.02    1 AL358232
S/G/Y/R/B/O NT_008476AL161728847371993RH755999307.42    1 AC068317, AL161728
S/G/Y/R/B/O NT_008476AL161728847372423RH418089308.44    1 AC068317, AL161728
S/G/Y/R/B/O NT_008476AL161728847607553AFM070XB11    9348.901 AC068317, AL161728
S/G/Y/R/B/O NT_008476AL161728847815853RH14036  93121.00  1 AL161728
S/G/Y/R/B/O NT_008476AL161728847816563RH115099307.02    1 AC068317, AL161728
S/G/Y/R/B/O NT_008476AL157936849836413RH764199304.70    1AC015671, AC015671, AL157936
S/G/Y/R/B/O NT_008476AC015671849923661          
S/G/Y/R/B/O NT_008476AL353768850587193RH630989307.0293092.009348.901 AC022185, AL353768
S/G/Y/R/B/O NT_008476AL353768851256713RH628909304.7093165.009349.201 AC022185, AL353768
S/G/Y/R/B/O NT_008476AL353768851472073RH801621941.45    1 AC022185, AL353768
S/G/Y/R/B/O NT_008476AL353768851487023RH479339306.92    1 AC022185, AL353768
S/G/Y/R/B/O NT_008476AL353768851675933RH631739306.9293165.009349.501 AC022185, AL353768
S/G/Y/R/B/O NT_008476AL353768851676573RH359469306.92    1 AC022185, AL353768
S/G/Y/R/B/O NT_008476AL353768851905093RH750559306.92    1 AC022185, AL353768
S/G/Y/R/B/O NT_008476AL353768851905233RH455789306.92    1 AC022185, AL353768
S/G/Y/R/B/O NT_008476AL354893852000443RH478859306.92    1 AC022185
S/G/Y/R/B/O NT_008476AL354893852030323RH630499306.8293165.009349.501 AC022185, AL354893
S/G/Y/R/B/O NT_008476AL354893852030523RH163969306.92    1 AC022185, AL354893
S/G/Y/R/B/O NT_008476AL354893852137653RH182109306.92    1 AL354893
S/G/Y/R/B/O NT_008476AL354893852137843RH418109306.92    1 AL354893
S/G/Y/R/B/O NT_008476AL354893852138043RH172979309.06    1 AL354893


  NT_008476 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_008476AL354893852259113RH628349306.92  9349.501 AL354893
S/G/Y/R/B/O NT_008476AL354893852259903RH404589306.92    1 AL354893
S/G/Y/R/B/O NT_008476AL354893852282653RH628069306.92  9349.501 AL354893
S/G/Y/R/B/O NT_008476AL354893852491663RH403569309.06    1 AL354893
S/G/Y/R/B/O NT_008476AL354893852721253RH628219306.92  9350.001 AC016667, AC027180, AL354893
S/G/Y/R/B/O NT_008476AL157384853051533RH988399309.06    1 AC016667, AC027180, AL157384
S/G/Y/R/B/O NT_008476AL157384853160713RH627899309.11  9352.101 AC016667, AC027180, AL157384
S/G/Y/R/B/O NT_008476AL157384853170493RH1989  93174.00  1 AC016667, AC027180, AL157384
S/G/Y/R/B/O NT_008476AL446023854581443          
S/G/Y/R/B/O NT_008476AL161729855726932RH74664  93202.00  1AC027096, AC053475, AC027096, AC053475, AL161729
S/G/Y/R/B/O NT_008476AL161729856369392RH929189309.11    1AC053475, AC053475, AL161729
S/G/Y/R/B/O NT_008476AL161729856526612RH629279309.06  9352.001AC053475, AC053475, AL161729
S/G/Y/R/B/O NT_008476AC053475856877061          
S/G/Y/R/B/O NT_008476AC027096856923341          
S/G/Y/R/B/O NT_008476AL392185857053503          
S/G/Y/R/B/O NT_008476AL355536857750323          
S/G/Y/R/B/O NT_008476AL354861858330663RH137049310.9093202.00  1 AC011845, AL354861
S/G/Y/R/B/O NT_008476AL354861858560333WI-10685    9353.901 AL354861
S/G/Y/R/B/O NT_008476AL354861859117873AFMA350XG1    9352.001 AC011845, AL354861
S/G/Y/R/B/O NT_008476AL354861859386953RH796169315.09    1 AC011845, AL354861
S/G/Y/R/B/O NT_008476AL354861859544813RH665309309.06    1 AL354861
S/G/Y/R/B/O NT_008476AL161454860042563RH939099309.06    1 AC061980, AL161454
S/G/Y/R/B/O NT_008476AL161454860778233RH629749309.1193193.009352.001 AC061980, AL161454
S/G/Y/R/B/O NT_008476AL159167861102013RH364719309.06    1 AL159167
S/G/Y/R/B/O NT_008476AL159167861103973RH648589310.90    1 AL159167
S/G/Y/R/B/O NT_008476AL159167861112703WI-6937    9352.101 AC061980, AL159167
S/G/Y/R/B/O NT_008476AL159167861112703RH629699314.04    1 AC061980, AL159167
S/G/Y/R/B/O NT_008476AL159167861428563RH1035819309.06    1 AC061980, AL159167
S/G/Y/R/B/O NT_008476AL159167861435493RH941759310.90    1 AL159167
S/G/Y/R/B/O NT_008476AL159167861435713RH403929310.90    1 AC061980, AL159167
S/G/Y/R/B/O NT_008476AL159167861474263RH182099310.90    1 AL159167
S/G/Y/R/B/O NT_008476AL159167861525183RH631129310.90  9352.001 AC061980, AL159167
S/G/Y/R/B/O NT_008476AL159167861530553WI-2013    9351.801 AC061980, AL159167
S/G/Y/R/B/O NT_008476AL449403861736661          
S/G/Y/R/B/O NT_008476AL138754863455823          
S/G/Y/R/B/O NT_008476AL160269863645633RH628829309.06  9352.001 AL160269
S/G/Y/R/B/O NT_008476AL160269863786383RH922109309.06    1 AL160269
S/G/Y/R/B/O NT_008476AL160269863994103AFM023XH8    9352.001 AL160269
S/G/Y/R/B/O NT_008476AL160269864069563RH41755  93206.00  1 AL160269
S/G/Y/R/B/O NT_008476AL133477866193793RH271929308.54    1 AL133477
S/G/Y/R/B/O NT_008476AL133477866203773RH626739310.90  9352.001 AL133477
S/G/Y/R/B/O NT_008476AL133477866203953RH99139310.90    1 AL133477
S/G/Y/R/B/O NT_008476AL133477866319013RH655249309.06    3AC004899, AC004899, AC093692, AL133477
S/G/Y/R/B/O NT_008476AL133477866436923RH630449309.06  9352.001 AL133477
S/G/Y/R/B/O NT_008476AL133477866450443RH1037849309.06    1 AL133477
S/G/Y/R/B/O NT_008476AL353578866817773RH630469309.11  9352.101 AL353578
S/G/Y/R/B/O NT_008476AL353578866817823RH403539310.90    1 AL353578
S/G/Y/R/B/O NT_008476AL589843868508053RH1041439309.06    1 AL589843
S/G/Y/R/B/O NT_008476AL589843868670123RH750339313.73    1 AL589843
S/G/Y/R/B/O NT_008476AL589843868839193RH127339309.06    1 AL589843


  NT_008476 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_008476AL589843868839333RH170189310.90    1 AL589843
S/G/Y/R/B/O NT_008476AL589843868845933RH359769309.06    1 AL589843
S/G/Y/R/B/O NT_008476AL589843868851293RH627349306.92  9352.001 AL589843
S/G/Y/R/B/O NT_008476AL589843868851793RH991939309.06    1 AL589843
S/G/Y/R/B/O NT_008476AL589843868860973RH630289309.06  9352.001 AL589843
S/G/Y/R/B/O NT_008476AL589843868923053RH921529309.06    1 AL589843
S/G/Y/R/B/O NT_008476AL451122869317213          
S/G/Y/R/B/O NT_008476AL161629869999883RH31107  92903.00  1 AC015889, AL161629
S/G/Y/R/B/O NT_008476AL353649871283403          
S/G/Y/R/B/O NT_008476AL389888871944913CHLC.GATA11A07    9338.101 AL389888
S/G/Y/R/B/O NT_008476AL389888873161573RH654289297.91    1 AL389888
S/G/Y/R/B/O NT_008476AL161632873958053          
S/G/Y/R/B/O NT_008476AL354853875386943RH632229299.5992921.009338.101 AC021583, AL354853
S/G/Y/R/B/O NT_008476AL353619876250523RH264709299.59    1 AC021582, AC021583, AL353619
S/G/Y/R/B/O NT_008476AL353619876253953RH628869301.37  9339.701 AC021582, AC021583, AL353619
S/G/Y/R/B/O NT_008476AL353619876255833RH358279299.59    1 AC021582, AC021583, AL353619
S/G/Y/R/B/O NT_008476AL446024877167253          
S/G/Y/R/B/O NT_008476AL354862878592042RH762769301.17    1 AC010612, AC021581, AL354862
S/G/Y/R/B/O NT_008476AL354862878612742RH486729301.27    1 AC010612, AC021581, AL354862
S/G/Y/R/B/O NT_008476AL354862878835862RH680799301.27    1 AC021581, AL354862
S/G/Y/R/B/O NT_008476AL354862879108032RH632279301.27  9339.602AC021580, AC021580, AC021581, AL354862
S/G/Y/R/B/O NT_008476AL354862879111622RH690359301.27    2AC021580, AC021580, AC021581
S/G/Y/R/B/O NT_008476AL354862879135062RH8019  92948.00  2AC021580, AC021580, AC021581, AL354862
S/G/Y/R/B/O NT_008476AL354862879135462RH914259301.27    2AC021580, AC021580, AC021581, AL354862
S/G/Y/R/B/O NT_008476AL162585879200813          
S/G/Y/R/B/O NT_008476AL355607879621223          
S/G/Y/R/B/O NT_008476AL158071881201352RH755819301.27    1 AL158071
S/G/Y/R/B/O NT_008476AL158071881281982WI-4577    9339.601 AL158071
S/G/Y/R/B/O NT_008476AL158071881540352RH495169301.2792931.00  1 AL158071
S/G/Y/R/B/O NT_008476AL158071882289562RH630149301.2792948.009339.601 AL158071
S/G/Y/R/B/O NT_008476AL513353882530533          
S/G/Y/R/B/O NT_008476AL353645883637853WI-532    9341.201 AL353645
S/G/Y/R/B/O NT_008476AL353764884236512RH457109303.18    1AC016177, AC016177, AL353764
S/G/Y/R/B/O NT_008476AL353764884241802RH629249303.31  9339.601AC016177, AC016177, AL353764
S/G/Y/R/B/O NT_008476AL353764884244152RH404559301.27    1AC016177, AC016177, AL353764
S/G/Y/R/B/O NT_008476AL159999885546393          
S/G/Y/R/B/O NT_008476AL591214886544983          
S/G/Y/R/B/O NT_008476AC016177887195571          
S/G/Y/R/B/O NT_008476 - RH101149309.06    0AL159167, AC061980, AL159167
S/G/Y/R/B/O NT_008476 - RH13846  92959.00  0 AF294796
S/G/Y/R/B/O NT_008476 - RH1030039310.90    0  
S/G/Y/R/B/O NT_008476 - RH163769304.09    0AL137848, AL137848, AL354924
S/G/Y/R/B/O NT_008476 - RH253979304.81    0  
S/G/Y/R/B/O NT_008476 - RH368849299.59    0  
S/G/Y/R/B/O NT_008476 - RH483039299.59    0  
S/G/Y/R/B/O NT_008476 - RH487649302.67    0  
S/G/Y/R/B/O NT_008476 - RH628569299.59    0  
S/G/Y/R/B/O NT_008476 - RH629489305.70    3AC015671, AC015671
S/G/Y/R/B/O NT_008476 - RH630739299.59    0  
S/G/Y/R/B/O NT_008476 - RH630879299.69  9338.200  


  NT_008476 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_008476 - RH982009304.09    0  
S/G/Y/R/B/O NT_008476 - RH807329306.92    0AC015671, AC015671
S/G/Y/R/B/O NT_008476 - RH809649305.29    0AL137848, AL137848, AL354924
S/G/Y/R/B/O NT_008476 - RH935059304.09    0