Chromosome 9 - RH Maps - Single Contig

Chromosome 9 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_033218	NT_008413	NT_027081	NT_023974	NT_030040	NT_033214	NT_030759	NT_030753
NT_033213	NT_033210	NT_008389	NT_033219	NT_033217	NT_029359	NT_033209	NT_033206
NT_033208	NT_033212	NT_033205	NT_033203	NT_031832	NT_033211	NT_033207	NT_008580
NT_023935	NT_028278	NT_023975	NT_023946	NT_023932	NT_024010	NT_033202	NT_008476
NT_033216	NT_008470	NT_008438	NT_017568	NT_029366	NT_008338	NT_031835	NT_017539
NT_008554	NT_023969	NT_030058	NT_019501	NT_033215	NT_024000	NT_023929	NT_023989

NT_019501

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_019501	AL669970	125659281	1	RH71144	9	414.50					1		AL158031, AL669970
S/G/Y/R/B/O	NT_019501	AL669970	125661496	1	RH70281	9	414.50					1		AL669970
S/G/Y/R/B/O	NT_019501	AL669970	125662539	1	RH75099	9	414.50					1		AL158031, AL669970
S/G/Y/R/B/O	NT_019501	AL669970	125662541	1	RH36155	9	414.50					1		AL158031, AL669970
S/G/Y/R/B/O	NT_019501	AL669970	125662978	1	RH62905	9	414.54			9	497.30	1		AL158031, AL669970
S/G/Y/R/B/O	NT_019501	AL669970	125663171	1	RH36686	9	414.50					1		AL158031, AL669970
S/G/Y/R/B/O	NT_019501	AL669970	125707924	1	RH65655	9	414.50					1		AL158031, AL669970
S/G/Y/R/B/O	NT_019501	AL591890	125807620	1	RH25607	7	510.76					2	AC025605, AC091654, AL669970,	AC025605, AC091654, AL591890, AL669970
S/G/Y/R/B/O	NT_019501	AC084100	125894532	1
S/G/Y/R/B/O	NT_019501	AL645768	125995052	3	RH101994	9	414.50					1		AL645768
S/G/Y/R/B/O	NT_019501	AL603650	126068109	3	RH76241	9	415.88					1		AL603650
S/G/Y/R/B/O	NT_019501	AL603650	126068408	3	RH45344	9	414.50					1		AL603650
S/G/Y/R/B/O	NT_019501	AL603650	126069073	3	RH67846	9	414.50					1		AL603650
S/G/Y/R/B/O	NT_019501	AL603650	126069989	3	RH70759	9	414.50					1		AL603650
S/G/Y/R/B/O	NT_019501	AL603650	126070317	3	RH70027	9	414.50					1		AL603650
S/G/Y/R/B/O	NT_019501	AL603650	126113080	3	RH71323	9	414.50					1		AL603650
S/G/Y/R/B/O	NT_019501	AL603650	126114834	3	RH40343	9	414.50					1		AL603650
S/G/Y/R/B/O	NT_019501	AL353611	126135434	3	RH70225	9	434.89					1
S/G/Y/R/B/O	NT_019501	AL353611	126219682	3	RH98378	9	414.50					1	AC022606,	AC022606, AL353611
S/G/Y/R/B/O	NT_019501	AL159992	126235212	3
S/G/Y/R/B/O	NT_019501	AC022606	126306285	1
S/G/Y/R/B/O	NT_019501	AL390778	126323656	2	WI-16144					9	497.30	1		AL390778
S/G/Y/R/B/O	NT_019501	AL390778	126323656	2	RH62899	9	411.07					1		AL390778
S/G/Y/R/B/O	NT_019501	AL390778	126346371	2	NIB29					9	497.30	1	AC022606,	AC022606, AL390778
S/G/Y/R/B/O	NT_019501	AL390778	126346371	2	RH7446	9	411.00	9	4775.00			1	AC022606,	AC022606, AL390778
S/G/Y/R/B/O	NT_019501	AL390778	126446633	2	RH47805	9	414.50					1		AL390778
S/G/Y/R/B/O	NT_019501	AL353615	126527559	1
S/G/Y/R/B/O	NT_019501	AL161452	126715558	3	RH62889	9	415.92			9	498.60	1		AC016427, AL161452
S/G/Y/R/B/O	NT_019501	AL161452	126722380	3	RH101935	9	415.92					1		AC016427, AL161452
S/G/Y/R/B/O	NT_019501	AL354761	126793613	3	RH63211	9	415.92			9	499.10	1		AC016427, AL354761
S/G/Y/R/B/O	NT_019501	AL158822	126883222	2	RH47750	9	415.92					1		AL158822
S/G/Y/R/B/O	NT_019501	AL158822	126920368	2	RH104343	9	417.72					1		AL158822
S/G/Y/R/B/O	NT_019501	AL158822	126989832	2	RH40425	9	417.62					1		AL158822
S/G/Y/R/B/O	NT_019501	AL158822	127035560	2	RH25593	9	432.46					1		AL158822
S/G/Y/R/B/O	NT_019501	AL158822	127036580	2	RH33683			9	4823.00			1		AL158822
S/G/Y/R/B/O	NT_019501	AL158822	127036588	2	RH62725	9	417.72			9	500.70	1		AL158822
S/G/Y/R/B/O	NT_019501	AL158822	127037440	2	RH62844	9	417.72			9	500.60	1		AL158822
S/G/Y/R/B/O	NT_019501	AL158822	127037586	2	RH16849	9	417.62					1		AL158822
S/G/Y/R/B/O	NT_019501	AL158822	127049404	2	RH18182	9	417.72					1		AL158822
S/G/Y/R/B/O	NT_019501	AL353636	127076879	3	RH62828	9	417.72			9	500.60	1		AL353636
S/G/Y/R/B/O	NT_019501	AL353636	127076886	3	RH76389	9	434.78					1		AL353636
S/G/Y/R/B/O	NT_019501	AL353636	127089398	3	RH70341	9	417.62					1		AL353636
S/G/Y/R/B/O	NT_019501	AL355574	127141817	2	RH76085	9	418.74					1		AL355574
S/G/Y/R/B/O	NT_019501	AL355574	127159977	2	RH62815	9	417.72			9	500.60	1		AL355574
S/G/Y/R/B/O	NT_019501	AL355574	127163255	2	RH27158	9	415.88					1		AL355574
S/G/Y/R/B/O	NT_019501	AL355574	127242869	2	RH104119	9	417.72					1		AL355574
S/G/Y/R/B/O	NT_019501	AL591038	127267834	3
S/G/Y/R/B/O	NT_019501	AL138781	127341611	3	RH76011	9	419.63					1		AL138781
S/G/Y/R/B/O	NT_019501	AL138781	127433341	3	RH63009	9	417.72			9	500.60	1		AL138781
S/G/Y/R/B/O	NT_019501	AL138781	127434205	3	D9S158					9	500.70	1		AL138781

NT_019501 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_019501	AL138781	127434205	3	RH13219	9	417.72			1		AL138781
S/G/Y/R/B/O	NT_019501	AL138781	127434205	3	RH631			9	4878.00	1		AL138781
S/G/Y/R/B/O	NT_019501		-		RH10071	9	414.54			0	AL390778,	AL390778
S/G/Y/R/B/O	NT_019501		-		RH11868	9	415.92			0
S/G/Y/R/B/O	NT_019501		-		RH40446	9	417.62			0	AL355987, AL590226,	AL355987, AL590226
S/G/Y/R/B/O	NT_019501		-		RH66592	9	417.72			0	AL355987, AL590226,	AL355987, AL590226