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  Chromosome 7 - RH Maps - Single Contig
 

Chromosome 7 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_029998 NT_007968 NT_033967 NT_033174 NT_033965 NT_007819 NT_033177 NT_023530
NT_030008 NT_033968 NT_023629 NT_028235 NT_030001 NT_033184 NT_033969 NT_007758
NT_007834 NT_017168 NT_033966 NT_033176 NT_033964 NT_007930 NT_029999 NT_033180
NT_007912 NT_023632 NT_007933 NT_030012 NT_023649 NT_007688 NT_027067 NT_033179
NT_033181 NT_007914 NT_033182 NT_033175 NT_007666 NT_007905 NT_007741 NT_028233


  NT_033964
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_033964AC002451950314743WI-8563    7459.501 AC002451
S/G/Y/R/B/O NT_033964AC002451950314743RH617927492.54    1 AC002451
S/G/Y/R/B/O NT_033964AC002451950315903RH250197492.54    1 AC002451
S/G/Y/R/B/O NT_033964AC002451950334423RH706757488.38    1 AC002451
S/G/Y/R/B/O NT_033964AC022261952285483WI-21055    7462.902AC079350, AC022261, AC023460, AC073096, AC079350
S/G/Y/R/B/O NT_033964AC022261952285483RH619067492.54    2AC079350, AC022261, AC023460, AC073096, AC079350
S/G/Y/R/B/O NT_033964AC022261952285773RH407597490.11    2AC079350, AC022261, AC023460, AC073096, AC079350
S/G/Y/R/B/O NT_033964AC022261952662053TIGR-A004Y38    7462.101AC079350, AC022261, AC073096, AC079350
S/G/Y/R/B/O NT_033964AC022261952662053RH616397492.54    1AC079350, AC022261, AC073096, AC079350
S/G/Y/R/B/O NT_033964AC079350952912961          
S/G/Y/R/B/O NT_033964AC024172952952831          
S/G/Y/R/B/O NT_033964AC091779953344603RH286017496.19    1AC024172, AC024172, AC091779
S/G/Y/R/B/O NT_033964AC002452954209873WI-3762    7476.701AC024172, AC002452, AC024172
S/G/Y/R/B/O NT_033964AC002452954452193RH134287501.7574499.00  1AC024172, AC002452, AC024172
S/G/Y/R/B/O NT_033964AC002452955155663RH786347494.60    1 AC002452
S/G/Y/R/B/O NT_033964AC002540955574303RH469927501.85    1 AC002540
S/G/Y/R/B/O NT_033964AC002540955575233RH14763  74499.007464.801 AC002540
S/G/Y/R/B/O NT_033964AC002540955575233RH615887494.70    1 AC002540
S/G/Y/R/B/O NT_033964AC002540955576463RH107027494.60    1 AC002540
S/G/Y/R/B/O NT_033964AC002540955577173RH268757501.75    1 AC002540
S/G/Y/R/B/O NT_033964AC002540955798833RH33647  74499.007464.801 AC002540
S/G/Y/R/B/O NT_033964AC002540955798833RH616957496.19    1 AC002540
S/G/Y/R/B/O NT_033964AC002540955806013RH261007494.60    1 AC002540
S/G/Y/R/B/O NT_033964AC002450956431033WI-5844    7466.001 AC002450
S/G/Y/R/B/O NT_033964AC096775956532213RH38196  74504.00  1 AC096775
S/G/Y/R/B/O NT_033964AC096775957286083RH619717506.29  7466.001 AC096775
S/G/Y/R/B/O NT_033964AC084368957468143          
S/G/Y/R/B/O NT_033964AC004458958876543CHLC.GATA5D08.584    7465.701 AC004458
S/G/Y/R/B/O NT_033964AC093644959389153          
S/G/Y/R/B/O NT_033964AC092031959799403WI-7472    7467.701 AC092031
S/G/Y/R/B/O NT_033964AC073230961044993RH932687508.76    1 AC073230
S/G/Y/R/B/O NT_033964AC073230961086613RH619047506.49  7467.801 AC073230
S/G/Y/R/B/O NT_033964AC073230961086613RH33655  74545.00  1 AC073230
S/G/Y/R/B/O NT_033964AC073230961088303RH932057507.12    1 AC073230
S/G/Y/R/B/O NT_033964AC073230961123443RH110137494.07    1 AC073230
S/G/Y/R/B/O NT_033964AC073230961475613RH364207508.76    1 AC073230
S/G/Y/R/B/O NT_033964AC073230961632983RH420407503.97    1 AC073230
S/G/Y/R/B/O NT_033964AC073230961632983RH647  74545.00  1 AC073230
S/G/Y/R/B/O NT_033964AC092595962206113          
S/G/Y/R/B/O NT_033964AC004774964250983RH474187503.97    1 AC004774
S/G/Y/R/B/O NT_033964AC004774964263803RH619137507.85  7465.801 AC004774
S/G/Y/R/B/O NT_033964AC004774964264113RH257947504.07    1 AC004774
S/G/Y/R/B/O NT_033964AC004774964699903RH167987493.55    1 AC004774
S/G/Y/R/B/O NT_033964AC004774964700003RH14233  74556.00  1 AC004774
S/G/Y/R/B/O NT_033964AC004774964702093RH918207509.98    1 AC004774
S/G/Y/R/B/O NT_033964AC004774964798223RH693227510.30    1 AC004774
S/G/Y/R/B/O NT_033964AC073421965152263          
S/G/Y/R/B/O NT_033964AC073900966409543RH921737507.81    1 AC073900
S/G/Y/R/B/O NT_033964AC004745966963763          
S/G/Y/R/B/O NT_033964AC007316967933133          


  NT_033964 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_033964AC007360968995053          
S/G/Y/R/B/O NT_033964AC003085969801633          
S/G/Y/R/B/O NT_033964AC007875971047993          
S/G/Y/R/B/O NT_033964AC004140971993833RH614807506.18  7469.401 AC004140, AC040907
S/G/Y/R/B/O NT_033964AC004140971993863RH1867  74569.00  1 AC004140, AC040907
S/G/Y/R/B/O NT_033964AC004140971996433RH408027511.59    1 AC004140, AC040907
S/G/Y/R/B/O NT_033964AC005326972896783WI-5508    7468.001 AC005326, AC040907
S/G/Y/R/B/O NT_033964AC005326973116733RH619897509.98  7467.801AC079781, AC005326, AC079781
S/G/Y/R/B/O NT_033964AC079781973550403          
S/G/Y/R/B/O NT_033964AC004967974052413RH462227508.70    1AC011744, AC073507, AC004967, AC011744, AC073507
S/G/Y/R/B/O NT_033964AC073101975718313RH614757513.10  7469.301AC025605, AC025605, AC073101
S/G/Y/R/B/O NT_033964AC073101976169213RH464677509.29    1AC025605, AC025605, AC073101
S/G/Y/R/B/O NT_033964AC091654976653483RH1039357509.29    1AC025605, AC025605, AC091654
S/G/Y/R/B/O NT_033964AC091654976689353RH256077510.76    2AC025605, AL591890, AL669970, AC025605, AC091654, AL591890, AL669970
S/G/Y/R/B/O NT_033964AC091654976746393RH615747511.59  7469.201AC025605, AC025605, AC091654
S/G/Y/R/B/O NT_033964AC091654976747263RH407587513.10    1AC025605, AC025605, AC091654
S/G/Y/R/B/O NT_033964AC091654976749533RH485107509.29    1AC025605, AC025605, AC091654
S/G/Y/R/B/O NT_033964AC091654977506183SGC31939    7470.601AC093169, AC091654, AC093169
S/G/Y/R/B/O NT_033964AC091654977511613RH796697510.61    1AC093169, AC091654, AC093169
S/G/Y/R/B/O NT_033964AC093169977514433          
S/G/Y/R/B/O NT_033964AC004841977679083RH126257513.10    1 AC004841
S/G/Y/R/B/O NT_033964AC004841977696693RH986447513.10    1 AC004841
S/G/Y/R/B/O NT_033964AC004841977826383RH927697509.29    1AC093799, AC093799
S/G/Y/R/B/O NT_033964AC004841978282443RH1764  74586.00  1AC093799, AC004841, AC093799
S/G/Y/R/B/O NT_033964AC093799979212653WI-4019    7470.701 AC025491, AC079881, AC093799
S/G/Y/R/B/O NT_033964AC074121980874353RH284117509.92    1 AC025491, AC074121
S/G/Y/R/B/O NT_033964AC074121980876673RH102347514.6174632.00  1 AC025491, AC074121
S/G/Y/R/B/O NT_033964AC074121980877413RH105637514.61    1 AC025491, AC074121
S/G/Y/R/B/O NT_033964AC092688980909873          
S/G/Y/R/B/O NT_033964AC095044982729833RH613277514.6174640.007474.401AC004991, AC004991, AC095044, AC099650
S/G/Y/R/B/O NT_033964AC004991983612353RH618177514.61  7470.601 AC004991, AC099650
S/G/Y/R/B/O NT_033964AC004991983700953WI-5284    7470.401 AC004991, AC061971, AC099650
S/G/Y/R/B/O NT_033964AC004991983774153RH423727514.61  7472.301 AC004991
S/G/Y/R/B/O NT_033964AC004893984386043RH265757510.82    1 AC004893, AC061971, AC099650
S/G/Y/R/B/O NT_033964AC004893984394233NIB217    7472.001 AC004893, AC061971, AC099650
S/G/Y/R/B/O NT_033964AC004893984394463RH616877512.40    1 AC004893, AC061971, AC099650
S/G/Y/R/B/O NT_033964AC004893984539153RH169667514.61    2AC104864, AC004893, AC061971, AC099650, AC104864
S/G/Y/R/B/O NT_033964AC004893984539193RH614217514.61  7474.701 AC004893, AC061971, AC099650
S/G/Y/R/B/O NT_033964AC004893984566363RH1415  74818.00  1 AC061971, AC099650
S/G/Y/R/B/O NT_033964AC004893984769303RH615417514.6174632.007474.501 AC004893, AC061971, AC099650
S/G/Y/R/B/O NT_033964AC114500984888103          
S/G/Y/R/B/O NT_033964AC073468985333473WI-10648    7472.301 AC073468
S/G/Y/R/B/O NT_033964AC073468985455533RH619197510.92  7472.301 AC073468
S/G/Y/R/B/O NT_033964AC112711986572813          
S/G/Y/R/B/O NT_033964AC005163986896163          
S/G/Y/R/B/O NT_033964AC004834987070323RH703297510.92    1 AC004834
S/G/Y/R/B/O NT_033964AC004834987563773RH119617510.92    1 AC004834
S/G/Y/R/B/O NT_033964AC004922988179183RH270287511.14    1 AC004922
S/G/Y/R/B/O NT_033964AC004922988179843RH166057511.80    1 AC004922
S/G/Y/R/B/O NT_033964AC004922988220943RH408117515.73    1 AC004922


  NT_033964 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_033964AC004922988222483RH767867515.80    1 AC004922
S/G/Y/R/B/O NT_033964AC090113988562523          
S/G/Y/R/B/O NT_033964AC073063988835443RH263707515.73    1 AC073063
S/G/Y/R/B/O NT_033964AC073063988836043RH128277515.73    1 AC073063
S/G/Y/R/B/O NT_033964AC073063988846693RH619737509.40  7476.701AL445189, AC073063, AL133266, AL445189
S/G/Y/R/B/O NT_033964AC005020989595143RH613967516.20  7476.101 AC005020, NG_000004
S/G/Y/R/B/O NT_033964AC005020989599733RH940117515.73    1 AC005020, NG_000004
S/G/Y/R/B/O NT_033964AC005020989737183RH924227515.73    1 AC005020, NG_000004
S/G/Y/R/B/O NT_033964AC005020989843343RH925147515.73    1 AC005020, NG_000004
S/G/Y/R/B/O NT_033964AC005020989909183RH1023307511.14    1AC006512, AC005020, AC006512, NG_000004
S/G/Y/R/B/O NT_033964AC005020990023263RH8271  74824.00  1 AC005020, NG_000004
S/G/Y/R/B/O NT_033964AC005020990027393RH617347515.73  7476.301 AC005020, NG_000004
S/G/Y/R/B/O NT_033964AC005020990373313RH482947510.30    1 AC005020, NG_000004
S/G/Y/R/B/O NT_033964AC005020990543313RH462317513.20    1 AC005020, NG_000004
S/G/Y/R/B/O NT_033964AC005020990747143RH713437515.73    1 AC005020, NG_000004
S/G/Y/R/B/O NT_033964AC005020990971013RH8555  74846.00  1 AC005020, NG_000004
S/G/Y/R/B/O NT_033964AC005020990975023RH459817511.14    1 AC005020, NG_000004
S/G/Y/R/B/O NT_033964AC005020990975413RH30612  74864.00  1 AC005020, NG_000004
S/G/Y/R/B/O NT_033964AC069294991306333RH677657515.80    1 AC069294, AF280107, NG_000004
S/G/Y/R/B/O NT_033964AC069294991315173RH614387513.2074829.007474.501 AC069294, AF280107, NG_000004
S/G/Y/R/B/O NT_033964AC069294991408353RH615757515.7374864.007476.301 AC069294, AF280107, NG_000004
S/G/Y/R/B/O NT_033964AC069294991492373RH14267  74864.00  1 AC069294, AF280107, NG_000004
S/G/Y/R/B/O NT_033964AC069294991841493RH615697511.0374829.007474.301 AC069294, AF209389, AF280107, NG_000004
S/G/Y/R/B/O NT_033964AC011904993174233RH618687510.2374841.007476.402AC004977, AC004977, AC011904, NG_000004
S/G/Y/R/B/O NT_033964AC011904993444563RH1039017512.29    2AC004977, AC004977, AC011904, NG_000004
S/G/Y/R/B/O NT_033964AC011904993497683RH801477516.24    2AC004977, AC004977, AC011904, NG_000004
S/G/Y/R/B/O NT_033964AC025605993596401          
S/G/Y/R/B/O NT_033964 - RH1032007511.14    1AC092849, AC092849
S/G/Y/R/B/O NT_033964 - RH1320  74734.00  1AC005088, AC005088, AF030453
S/G/Y/R/B/O NT_033964 - SGC35227    7468.701AC004011, AC004011
S/G/Y/R/B/O NT_033964 - RH1032857510.30    0  
S/G/Y/R/B/O NT_033964 - RH1325  74711.00  1AC005072, AC005072, AF006752
S/G/Y/R/B/O NT_033964 - RH1034957511.14    1AC004522, AC004522
S/G/Y/R/B/O NT_033964 - RH13896  74769.00  1AC009488, AC009488, AF053356, M11319, X02158
S/G/Y/R/B/O NT_033964 - RH1041027509.71    1AC092849, AC092849
S/G/Y/R/B/O NT_033964 - RH1416  74694.00  1AC004953, AC004953
S/G/Y/R/B/O NT_033964 - RH116907511.14    1AC092849, AC092849
S/G/Y/R/B/O NT_033964 - RH1428  74853.00  1AC093619, AC093619
S/G/Y/R/B/O NT_033964 - RH124827516.24    2AC073842, AC092483, AC073842, AC092483
S/G/Y/R/B/O NT_033964 - RH1913  74656.00  1AC009330, AC009542, AC009330, AC009542
S/G/Y/R/B/O NT_033964 - RH179887511.14    1AC093619, AC093619
S/G/Y/R/B/O NT_033964 - RH361437516.24    1AC005071, AC005073, AC005071, AC005073
S/G/Y/R/B/O NT_033964 - RH367367510.34    0AC092849, AC092849, AF264752
S/G/Y/R/B/O NT_033964 - RH369617510.30    0AC073842, AC073842
S/G/Y/R/B/O NT_033964 - RH407307516.24    1AC073842, AC092483, AC073842, AC092483
S/G/Y/R/B/O NT_033964 - RH472787510.34    0AC004922, AC090439, AC004922, AC090439
S/G/Y/R/B/O NT_033964 - RH473057511.14    1AC073842, AC092483, AC073842, AC092483
S/G/Y/R/B/O NT_033964 - RH476467511.14    1AC005071, AC092483, AC005071, AC092483
S/G/Y/R/B/O NT_033964 - RH476727509.40    1AC073842, AC073842
S/G/Y/R/B/O NT_033964 - RH613707512.60  7472.301AC073842, AC073842


  NT_033964 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_033964 - RH615027516.24  7474.001AC005071, AC005071
S/G/Y/R/B/O NT_033964 - RH615057516.24  7474.002AC073842, AC092483, AC073842, AC092483
S/G/Y/R/B/O NT_033964 - RH615257516.24  7474.001AC073842, AC092483, AC073842, AC092483
S/G/Y/R/B/O NT_033964 - RH615377510.34  7474.101AC093619, AC093619
S/G/Y/R/B/O NT_033964 - RH616737516.24  7474.101AC005071, AC005073, AC005071, AC005073
S/G/Y/R/B/O NT_033964 - RH616787510.92  7474.100AC005740, AC005740
S/G/Y/R/B/O NT_033964 - RH617007516.24  7474.102AC073842, AC092483, AC073842, AC092483
S/G/Y/R/B/O NT_033964 - RH617107511.14  7474.301AC069281, AC069281, AF053356
S/G/Y/R/B/O NT_033964 - RH618957511.1474864.007474.501AC069281, AC069281
S/G/Y/R/B/O NT_033964 - RH32204  74853.00  1AC093619, AC093619
S/G/Y/R/B/O NT_033964 - RH32716  74829.00  1AC006387, AC006387
S/G/Y/R/B/O NT_033964 - RH33366  74801.00  1AC073873, AC073873
S/G/Y/R/B/O NT_033964 - RH33659  74630.00  2AC073517, AC073842, AC073517, AC073842, AC091390
S/G/Y/R/B/O NT_033964 - RH38193  74750.00  1AC005250, AC005250
S/G/Y/R/B/O NT_033964 - RH38534  74705.00  1AF047825, AF047825
S/G/Y/R/B/O NT_033964 - RH38594  74694.00  1AC004965, AC004965
S/G/Y/R/B/O NT_033964 - RH41714  74614.00  1AC011895, AC084057, AC011895, AC084057, AF312032, AY056047
S/G/Y/R/B/O NT_033964 - RH646  74678.00  1AC004876, AC004876, AF386492
S/G/Y/R/B/O NT_033964 - RH8512  74780.00  2AC073842, AC092483, AC073842, AC092483
S/G/Y/R/B/O NT_033964 - RH8524  74780.00  2AC073842, AC092483, AC073842, AC092483
S/G/Y/R/B/O NT_033964 - RH8764  74623.00  1AC011895, AC084057, AC011895, AC084057, AF312032, AY056047
S/G/Y/R/B/O NT_033964 - RH619017511.07  7474.501AC004522, AC004977, AC004522, AC004977, D14034, X69953
S/G/Y/R/B/O NT_033964 - RH619317511.14  7476.101AC073842, AC073842
S/G/Y/R/B/O NT_033964 - RH656837511.14    1AC092849, AC092849
S/G/Y/R/B/O NT_033964 - WI-13317    7476.301AC093619, AC093619
S/G/Y/R/B/O NT_033964 - RH656927516.24    0  
S/G/Y/R/B/O NT_033964 - RH678757511.35    1AC009488, AC009488, AF053356
S/G/Y/R/B/O NT_033964 - RH681867515.73    0  
S/G/Y/R/B/O NT_033964 - RH748497510.19    0  
S/G/Y/R/B/O NT_033964 - RH751587511.56    1AC084876, AC040979, AC084876
S/G/Y/R/B/O NT_033964 - RH764977506.00    1AC096662, AC096662
S/G/Y/R/B/O NT_033964 - RH765757510.40    1AC009488, AC009488, AF053356
S/G/Y/R/B/O NT_033964 - RH784747510.34    1AC073842, AC073842
S/G/Y/R/B/O NT_033964 - RH796827510.82    0  
S/G/Y/R/B/O NT_033964 - RH921067516.24    1AC092849, AC092849
S/G/Y/R/B/O NT_033964 - RH924247511.14    1AC005071, AC005073, AC005071, AC005073
S/G/Y/R/B/O NT_033964 - RH933517514.61    0  
S/G/Y/R/B/O NT_033964 - RH940357510.44    1AC005071, AC005073, AC005071, AC005073
S/G/Y/R/B/O NT_033964 - RH988937503.17    0