Chromosome 7 - RH Maps - Single Contig

Chromosome 7 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_029998	NT_007968	NT_033967	NT_033174	NT_033965	NT_007819	NT_033177	NT_023530
NT_030008	NT_033968	NT_023629	NT_028235	NT_030001	NT_033184	NT_033969	NT_007758
NT_007834	NT_017168	NT_033966	NT_033176	NT_033964	NT_007930	NT_029999	NT_033180
NT_007912	NT_023632	NT_007933	NT_030012	NT_023649	NT_007688	NT_027067	NT_033179
NT_033181	NT_007914	NT_033182	NT_033175	NT_007666	NT_007905	NT_007741	NT_028233

NT_027067

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_027067	AC006021	139978592	3
S/G/Y/R/B/O	NT_027067	AC004914	140198626	3	RH79695	7	641.16					1		AC004914
S/G/Y/R/B/O	NT_027067	AC004914	140198646	3	RH40783	7	640.66					1		AC004914
S/G/Y/R/B/O	NT_027067	AC004961	140256797	3	RH1725			7	6081.00			1		AC004961
S/G/Y/R/B/O	NT_027067	AC025816	140288331	3
S/G/Y/R/B/O	NT_027067	AC004849	140318268	3	CHLC.GATA63F08					7	614.00	1		AC004849
S/G/Y/R/B/O	NT_027067	AC004849	140319938	3	RH102756	7	640.66					1		AC004849
S/G/Y/R/B/O	NT_027067	AC004849	140321525	3	RH18256	7	640.66					1		AC004849
S/G/Y/R/B/O	NT_027067	AC004849	140326969	3	RH61322	7	640.66			7	613.50	1		AC004849
S/G/Y/R/B/O	NT_027067	AC004849	140326995	3	RH40772	7	640.66					1		AC004849
S/G/Y/R/B/O	NT_027067	AC004849	140396116	3	RH40640	7	640.66					1		AC004849
S/G/Y/R/B/O	NT_027067	AC005377	140423753	3
S/G/Y/R/B/O	NT_027067	AC093087	140570451	3	RH32327			7	6048.00			1		AC091440, AC093087, AC093695
S/G/Y/R/B/O	NT_027067	AC093087	140570577	3	RH17193	7	641.27					1		AC091440, AC093087, AC093695
S/G/Y/R/B/O	NT_027067	AC093087	140591305	3	RH104127	7	641.27					1		AC091440, AC093087, AC093695
S/G/Y/R/B/O	NT_027067	AC069335	140692888	3	RH61929	7	641.37			7	616.50	1		AC069335, AC093695, AF192792
S/G/Y/R/B/O	NT_027067	AC069335	140692969	3	RH47137	7	641.09					1		AC069335, AC093695, AF192792
S/G/Y/R/B/O	NT_027067	AC069335	140755169	3	RH75260	7	643.42					1		AC069335, AC093695
S/G/Y/R/B/O	NT_027067	AC006452	140800427	3
S/G/Y/R/B/O	NT_027067	AC006344	140931493	3	RH10197	7	642.99					1		AC006344, AC023303, AC092429
S/G/Y/R/B/O	NT_027067	AC006344	140931493	3	RH1422			7	6074.00			1		AC006344, AC023303, AC092429
S/G/Y/R/B/O	NT_027067	AC006344	140956181	3	RH98519	7	643.53					2	AC093150,	AC006344, AC023303, AC092429, AC093150
S/G/Y/R/B/O	NT_027067	AC006344	141045425	3	RH40782	7	642.94					1		AC006344
S/G/Y/R/B/O	NT_027067	AC079339	141047379	3
S/G/Y/R/B/O	NT_027067	AC006347	141065929	3	RH33661			7	6073.00			1		AC006347
S/G/Y/R/B/O	NT_027067	AC006347	141066685	3	RH61864	7	642.99			7	617.80	1		AC006347
S/G/Y/R/B/O	NT_027067	AC006347	141085244	3	WI-4975					7	617.70	1		AC006347
S/G/Y/R/B/O	NT_027067	AC006006	141239320	3	RH61413	7	643.86			7	618.30	2		AC006006, AC069511
S/G/Y/R/B/O	NT_027067	AC006006	141242856	3	RH33762			4	2553.00			2		AC006006, AC069511
S/G/Y/R/B/O	NT_027067	AC006006	141248566	3	RH16193	7	642.94					2		AC006006, AC069511
S/G/Y/R/B/O	NT_027067	AC006351	141253960	3
S/G/Y/R/B/O	NT_027067	AC006362	141295258	3	RH14225			7	6074.00			2		AC006362, AC069511, AC091653
S/G/Y/R/B/O	NT_027067	AC006362	141307438	3	RH40727	7	642.94					2		AC006362, AC069511
S/G/Y/R/B/O	NT_027067	AC006362	141370023	3	RH61889	7	642.99			7	617.80	1		AC006362
S/G/Y/R/B/O	NT_027067	AC006362	141407437	3	D7S1779					7	619.20	1		AC006362
S/G/Y/R/B/O	NT_027067	AC006396	141433707	3	WI-681					7	619.20	1		AC006396
S/G/Y/R/B/O	NT_027067	AC006396	141458438	3	WI-9957					7	619.20	1		AC006396
S/G/Y/R/B/O	NT_027067	AC004928	141508189	3	RH36919	7	646.23					1		AC004928
S/G/Y/R/B/O	NT_027067	AC004928	141508239	3	RH1324			7	6076.00			1		AC004928
S/G/Y/R/B/O	NT_027067	AC005692	141630642	3
S/G/Y/R/B/O	NT_027067	AC073878	141711793	3	RH61477	7	645.48			7	619.70	1		AC073878
S/G/Y/R/B/O	NT_027067	AC073878	141716026	3	RH18406	7	644.40					1		AC073878
S/G/Y/R/B/O	NT_027067	AC099547	141804153	3
S/G/Y/R/B/O	NT_027067	AC004918	141889099	3	RH80969	7	646.40					1		AC004918
S/G/Y/R/B/O	NT_027067	AC004918	141893497	3	RH10701	7	646.06					1		AC004918
S/G/Y/R/B/O	NT_027067	AC004918	141894307	3	RH18340	7	646.02					1		AC004918
S/G/Y/R/B/O	NT_027067	AC004918	141897560	3	RH61404	7	646.23			7	620.30	1		AC004918
S/G/Y/R/B/O	NT_027067	AC004918	141897945	3	RH8506			7	6100.00			1		AC004918
S/G/Y/R/B/O	NT_027067	AC004918	141916559	3	RH61782	7	649.66			7	623.40	1		AC004918
S/G/Y/R/B/O	NT_027067	AC004918	141941072	3	RH80733	7	647.69					1		AC004918

NT_027067 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_027067	AC004918	141941227	3	RH40789	7	649.95					1
S/G/Y/R/B/O	NT_027067	AC004979	141986998	3	RH61494	7	647.79			7	622.90	1		AC004979
S/G/Y/R/B/O	NT_027067	AC004979	141987011	3	RH61467	7	649.95			7	623.60	1		AC004979
S/G/Y/R/B/O	NT_027067	AC004979	141987017	3	RH47311	7	649.95					1		AC004979
S/G/Y/R/B/O	NT_027067	AC093638	142065699	3
S/G/Y/R/B/O	NT_027067	AC073647	142094746	3
S/G/Y/R/B/O	NT_027067	AC091684	142265524	3
S/G/Y/R/B/O	NT_027067	AC091742	142343271	3	RH61325	7	651.77			7	625.20	1		AC091742
S/G/Y/R/B/O	NT_027067	AC091742	142343271	3	RH32530			7	6074.00			1		AC091742
S/G/Y/R/B/O	NT_027067	AC091742	142401786	3	WI-4587					7	624.90	1		AC091686, AC091742
S/G/Y/R/B/O	NT_027067	U66059	142543893	3	RH74470	7	651.77					1		U07977, U66059
S/G/Y/R/B/O	NT_027067	U66059	142543893	3	RH31770			7	6054.00			1		U07977, U66059
S/G/Y/R/B/O	NT_027067	U66059	142599938	3	RH94247	7	651.77					1		AC091686, U07978, U66059
S/G/Y/R/B/O	NT_027067	U66059	142643573	3	RH71395	7	651.77					1		AF009660, U66059
S/G/Y/R/B/O	NT_027067	U66059	142646735	3	RH103934	7	651.77					1		AF009660, U66059
S/G/Y/R/B/O	NT_027067	U66059	142651313	3	RH70695	7	651.77					1		AF009660, U66059
S/G/Y/R/B/O	NT_027067	U66060	142751472	3	RH66819	7	651.77					3		AF009663, AF009663, AF009663, U66060, U66060, U66060
S/G/Y/R/B/O	NT_027067	U66060	142770924	3	RH66819	7	651.77					3		AF009663, AF009663, AF009663, U66060, U66060, U66060
S/G/Y/R/B/O	NT_027067	U66060	142791288	3	RH66819	7	651.77					3		AF009663, AF009663, AF009663, U66060, U66060, U66060
S/G/Y/R/B/O	NT_027067	U66060	142797618	3	RH61731	7	651.77			7	625.20	1		AF009663, U66060
S/G/Y/R/B/O	NT_027067	U66060	142797618	3	RH14514			7	6013.00			1		AF009663, U66060
S/G/Y/R/B/O	NT_027067	U66060	142877291	3	RH62006	7	653.50			7	628.50	1		U03115, U66060
S/G/Y/R/B/O	NT_027067	U66060	142877291	3	RH33636			7	6039.00			1		U03115, U66060
S/G/Y/R/B/O	NT_027067	U66060	142898458	3	RH13997			7	6030.00			1	U66061,	AL390202, U66060, U66061
S/G/Y/R/B/O	NT_027067	U66060	142916031	3	RH61992	7	653.50			7	628.50	1	U66061,	U66060, U66061
S/G/Y/R/B/O	NT_027067	U66060	142916241	3	RH40684	7	653.50					1	U66061,	U66060, U66061
S/G/Y/R/B/O	NT_027067	U66061	142949315	3	RH98372	9	135.31					2	AL356489,	AF029308, AL356489
S/G/Y/R/B/O	NT_027067	U66061	142995993	3	RH103391	7	653.50					1		U66061
S/G/Y/R/B/O	NT_027067	U66061	142998611	3	RH69087	7	653.50					1		U66061
S/G/Y/R/B/O	NT_027067	U66061	143018222	3	RH46953	7	654.79					1	AC104597, AL358573,	AC104597, AF029308, AL358573
S/G/Y/R/B/O	NT_027067	U66061	143085182	3	RH75839	7	654.85					2	AC099395,	AC099395, M14158, U66061
S/G/Y/R/B/O	NT_027067	U66061	143085964	3	RH69072	7	653.50					1		M14158, U66061
S/G/Y/R/B/O	NT_027067	U66061	143086788	3	RH76190	7	654.23					2	AC099395,	AC099395, M14158, U66061
S/G/Y/R/B/O	NT_027067	U66061	143100758	3	RH69537	7	653.50					3	AC099395, AC104597,	AC099395, AC104597, M12510, M12888, U66061
S/G/Y/R/B/O	NT_027067	U66061	143100759	3	RH61630	7	653.50			7	628.50	3	AC099395, AC104597,	AC099395, AC104597, M12510, M12888, U66061
S/G/Y/R/B/O	NT_027067	U66061	143100759	3	RH33580			7	5993.00			3	AC099395, AC104597,	AC099395, AC104597, M12510, M12888, U66061
S/G/Y/R/B/O	NT_027067	AF107256	143129153	3
S/G/Y/R/B/O	NT_027067		-		RH27017	7	646.23					1	AC092463,	AC004555, AC092463
S/G/Y/R/B/O	NT_027067		-		RH45804	7	646.12					0	AC004918,	AC004918
S/G/Y/R/B/O	NT_027067		-		RH61311	7	653.47			7	617.80	0	AC073342,	AC073342
S/G/Y/R/B/O	NT_027067		-		RH61571	7	642.99			7	617.90	0	AC069335,	AC069335, AC093695
S/G/Y/R/B/O	NT_027067		-		RH61998	7	643.10			7	626.80	0
S/G/Y/R/B/O	NT_027067		-		RH75576	7	643.20					0
S/G/Y/R/B/O	NT_027067		-		RH78212	7	653.50					0
S/G/Y/R/B/O	NT_027067		-		RH98249	7	643.37					0
S/G/Y/R/B/O	NT_027067		-		RH98408	7	647.16					0
S/G/Y/R/B/O	NT_027067		-		RH99114	7	646.23					0	AC004918,	AC004918