Chromosome 12 - RH Maps - Single Contig

Chromosome 12 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_009759	NT_009738	NT_024413	NT_033253	NT_009731	NT_009702	NT_009714	NT_033252
NT_027128	NT_024397	NT_030810	NT_009700	NT_030814	NT_024382	NT_030804	NT_026404
NT_009666	NT_009471	NT_033254	NT_033256	NT_033255	NT_033247	NT_024380	NT_025869
NT_024352	NT_009486	NT_024370	NT_028332	NT_009781	NT_030809	NT_009784	NT_009785
NT_009526	NT_026397	NT_024417	NT_026409	NT_009782	NT_009609	NT_030118	NT_009563
NT_009458	NT_009485	NT_009509	NT_009410	NT_024362	NT_028337	NT_009441	NT_024372
NT_009432	NT_027130	NT_009711	NT_009506	NT_030813	NT_027129	NT_009616	NT_009561
NT_029419	NT_009540	NT_009528	NT_015310	NT_009456	NT_029428	NT_024375	NT_009593
NT_033251	NT_024460	NT_024381	NT_024354	NT_030815	NT_024373	NT_009551	NT_019546
NT_029418	NT_024420	NT_024356	NT_026408	NT_024480	NT_026396	NT_024454	NT_025864
NT_009538	NT_030122	NT_024363	NT_029420	NT_024400	NT_009729	NT_019555	NT_009447
NT_009513	NT_009690	NT_015316	NT_030816	NT_009575	NT_024394	NT_033258	NT_009681
NT_009743	NT_033257	NT_024383	NT_030807	NT_030124	NT_009660	NT_033245	NT_009770
NT_009601	NT_009654	NT_030806	NT_029421	NT_009436	NT_009775	NT_028327	NT_009487
NT_009438	NT_009464	NT_033248	NT_009755	NT_009534	NT_009482	NT_024376	NT_009523
NT_024369	NT_033246	NT_033250	NT_027131	NT_009455	NT_024477

NT_009731

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_009731	AC005904	5786773	1	RH52677	12	36.27			12	66.70	1		AC005904
S/G/Y/R/B/O	NT_009731	AC006576	5801209	3
S/G/Y/R/B/O	NT_009731	AC005846	5846583	3
S/G/Y/R/B/O	NT_009731	AC005845	5958487	1
S/G/Y/R/B/O	NT_009731	AC006057	6050577	3	RH52831	12	37.53			12	69.00	1		AC006057
S/G/Y/R/B/O	NT_009731	AC006057	6050577	3	RH33416			12	309.00			1		AC006057
S/G/Y/R/B/O	NT_009731	AC006057	6050621	3	RH67766	12	37.53					1		AC006057
S/G/Y/R/B/O	NT_009731	AC006057	6050638	3	RH44617	12	25.03					1		AC006057
S/G/Y/R/B/O	NT_009731	AC006057	6067200	3	RH39774	12	39.88					1		AC006057
S/G/Y/R/B/O	NT_009731	AC006057	6067231	3	RH1904			12	312.00			1		AC006057
S/G/Y/R/B/O	NT_009731	AC006057	6157632	3	RH44631	12	26.86					1		AC006057
S/G/Y/R/B/O	NT_009731	AC006057	6158173	3	RH52683	12	34.19			12	65.70	1		AC006057, M75866
S/G/Y/R/B/O	NT_009731	AC006057	6158461	3	RH76225	12	41.10					1		AC006057, M75866
S/G/Y/R/B/O	NT_009731	AC006057	6176502	3	RH39912	12	37.53					1	AC005840,	AC005840, AC006057, AF060913, Z92981
S/G/Y/R/B/O	NT_009731	AC006057	6177038	3	RH80869	12	36.90					1	AC005840,	AC005840, AC006057, AF060913, L29007, Z92981
S/G/Y/R/B/O	NT_009731	AC005840	6215660	3	RH45015	12	37.01					1		AC005840
S/G/Y/R/B/O	NT_009731	AC005840	6220573	3	RH8615			12	391.00			1		AC005840
S/G/Y/R/B/O	NT_009731	AC005840	6268570	3	RH53034	12	39.88	12	463.00	12	71.30	1		AC005840
S/G/Y/R/B/O	NT_009731	AC005840	6280795	3	RH52674	12	41.72			12	83.30	1	AC006064,	AC005840, AC006064
S/G/Y/R/B/O	NT_009731	AC005840	6291476	3	RH44502	12	38.85					1	AC006064,	AC005840, AC006064
S/G/Y/R/B/O	NT_009731	AC005840	6291816	3	RH10321	12	39.88					1	AC006064,	AC005840, AC006064
S/G/Y/R/B/O	NT_009731	AC005840	6293020	3	RH1318			12	453.00			1	AC006064,	AC005840, AC006064
S/G/Y/R/B/O	NT_009731	AC005840	6293099	3	WI-2742					12	73.50	1	AC006064,	AC005840, AC006064
S/G/Y/R/B/O	NT_009731	AC005840	6293496	3	RH39772	12	39.81					1	AC006064,	AC005840, AC006064
S/G/Y/R/B/O	NT_009731	AC005840	6293619	3	RH80806	12	41.61					1	AC006064,	AC005840, AC006064
S/G/Y/R/B/O	NT_009731	AC005840	6311452	3	RH80926	12	147.93					3	AC006064, AC073262, AC084824, AC087588, AL132794,	AC005840, AC006064, AC019269, AC073262, AC084824, AC087588, AL132794, AL513529
S/G/Y/R/B/O	NT_009731	AC006064	6361230	3	RH52958	12	42.78			12	73.20	1		AC006064, AC021182
S/G/Y/R/B/O	NT_009731	AC006064	6367266	3	RH44173	12	42.22					1		AC006064, J04038
S/G/Y/R/B/O	NT_009731	AC006064	6368976	3	RH93399	12	42.28					1		AC006064
S/G/Y/R/B/O	NT_009731	AC006064	6386276	3	RH52937	12	40.88			12	82.40	1		AC006064, M33132
S/G/Y/R/B/O	NT_009731	AC006064	6399491	3	RH52554	12	41.72			12	83.30	1		AC006064, M33132
S/G/Y/R/B/O	NT_009731	AC006064	6399512	3	RH64827	12	42.28					1		AC006064, M33132
S/G/Y/R/B/O	NT_009731	AC006064	6399571	3	RH44080	12	42.61					1		AC006064, M33132
S/G/Y/R/B/O	NT_009731	AC006064	6399941	3	RH52712	12	41.32			12	82.90	1		AC006064
S/G/Y/R/B/O	NT_009731	AC006064	6420892	3	RH48433	12	42.22					1		AC006064
S/G/Y/R/B/O	NT_009731	AC079387	6452935	1	RH52552	12	43.35	12	473.00	12	82.90	1		AC079387
S/G/Y/R/B/O	NT_009731	AC079387	6473028	1	RH52854	12	43.69	12	422.00	12	75.20	1		AC079387
S/G/Y/R/B/O	NT_009731	AC079387	6495680	1	RH77738	12	45.10					1		AC079387
S/G/Y/R/B/O	NT_009731	AC079387	6512622	1	RH80941	12	44.09					1		AC079387
S/G/Y/R/B/O	NT_009731	AC079387	6519315	1	RH76202	12	43.35					1		AC079387, Y10211, Y13586
S/G/Y/R/B/O	NT_009731	AC079387	6519559	1	RH44859	12	43.41					1		AC079387, Y10211
S/G/Y/R/B/O	NT_009731	AC079387	6538623	1	RH53050	12	43.35			12	83.30	1		AC079387
S/G/Y/R/B/O	NT_009731	AC079387	6538705	1	RH44159	12	43.69					1		AC079387
S/G/Y/R/B/O	NT_009731	AC079387	6557150	1	RH53085	12	43.35			12	82.90	1		AC079387
S/G/Y/R/B/O	NT_009731	AC079387	6557181	1	RH10442	12	43.69					1		AC079387
S/G/Y/R/B/O	NT_009731	AC079387	6557225	1	RH44179	12	43.35					1		AC079387
S/G/Y/R/B/O	NT_009731	AC079387	6604120	1	RH78547	3	119.63					2	AC006058, AC107625,	AC006058, AC079387, AC107625
S/G/Y/R/B/O	NT_009731	AC079387	6604299	1	RH10501	3	143.05					2	AC006058, AC107625,	AC006058, AC079387, AC107625
S/G/Y/R/B/O	NT_009731	AC079387	6604399	1	RH58719	3	143.16			3	171.20	2	AC006058, AC107625,	AC006058, AC079387, AC107625
S/G/Y/R/B/O	NT_009731	AC079387	6604399	1	RH9920	3	143.89					2	AC006058, AC107625,	AC006058, AC079387, AC107625

NT_009731 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_009731	AC079387	6615258	1	RH52917	12	43.41					1		AC079387
S/G/Y/R/B/O	NT_009731	AC079387	6615258	1	WI-20949					12	84.80	1		AC079387
S/G/Y/R/B/O	NT_009731	AC079387	6615288	1	RH44540	12	43.69					1		AC079387
S/G/Y/R/B/O	NT_009731	AC079387	6615651	1	RH45060	12	43.35					1		AC079387
S/G/Y/R/B/O	NT_009731	AC079387	6932985	1	RH39803	12	43.69					1		AC079387
S/G/Y/R/B/O	NT_009731	U47924	6655960	3	RH14040			12	483.00			1		U47924
S/G/Y/R/B/O	NT_009731	U47924	6657189	3	RH26276	12	42.90					1		U47924
S/G/Y/R/B/O	NT_009731	U47924	6662403	3	RH78647	12	43.35					1		U47924
S/G/Y/R/B/O	NT_009731	U47924	6663550	3	RH52890	12	43.35			12	82.90	1		U47924
S/G/Y/R/B/O	NT_009731	U47924	6663815	3	RH75875	12	43.69					1		U47924
S/G/Y/R/B/O	NT_009731	U47924	6676109	3	RH75876	12	41.88					1		U47924
S/G/Y/R/B/O	NT_009731	U47924	6683827	3	RH75800	12	43.58					1		U47924
S/G/Y/R/B/O	NT_009731	U47924	6695179	3	RH48309	12	43.35					1		U47924
S/G/Y/R/B/O	NT_009731	U47924	6702936	3	RH52717	12	43.69	12	439.00	12	75.30	1		U47924
S/G/Y/R/B/O	NT_009731	U47924	6703066	3	RH78311	12	43.35					1		U47924
S/G/Y/R/B/O	NT_009731	U47924	6707418	3	RH39764	12	43.69					1		U47924, X69723
S/G/Y/R/B/O	NT_009731	U47924	6721058	3	RH71256	12	43.69					1		U47924
S/G/Y/R/B/O	NT_009731	U47924	6747681	3	RH99235	12	43.69					1		U47924
S/G/Y/R/B/O	NT_009731	U47924	6750687	3	RH75916	12	45.21					1		U47924, X51956
S/G/Y/R/B/O	NT_009731	U47924	6759419	3	RH1863			12	437.00			1	AC006512,	AC006512, U47924, X51956
S/G/Y/R/B/O	NT_009731	U47924	6778388	3	RH39707	12	43.35					1	AC006512,	AC006512, U47924
S/G/Y/R/B/O	NT_009731	U47924	6778813	3	RH44233	12	43.35					1	AC006512,	AC006512, U47924
S/G/Y/R/B/O	NT_009731	U47924	6782474	3	RH14863			12	441.00			1	AC006512,	AC006512, U47924
S/G/Y/R/B/O	NT_009731	U47924	6801711	3	RH104406	12	45.21					1
S/G/Y/R/B/O	NT_009731	U47924	6802005	3	RH10204	12	45.71					1	AC006512,	AC006512, U47924
S/G/Y/R/B/O	NT_009731	U47924	6802060	3	RH44077	12	45.21					1	AC006512,	AC006512, U47924
S/G/Y/R/B/O	NT_009731	U47924	6812448	3	RH32737			12	374.00			1	AC006512,	AC006512, U47924
S/G/Y/R/B/O	NT_009731	U47924	6812829	3	RH44355	12	44.37					1	AC006512,	AC006512, U47924
S/G/Y/R/B/O	NT_009731	U47924	6815238	3	RH44811	12	45.21					1	AC006512,	AC006512, U47924
S/G/Y/R/B/O	NT_009731	U47924	6816366	3	RH10256	12	45.71					1	AC006512,	AC006512, U47924
S/G/Y/R/B/O	NT_009731	U47924	6827309	3	RH47084	12	45.71					1	AC006512,	AC006512, U47924
S/G/Y/R/B/O	NT_009731	U47924	6827317	3	RH67755	12	44.15					1	AC006512,	AC006512, U47924
S/G/Y/R/B/O	NT_009731	AC006512	6905324	3	RH17587	12	45.71					1		AC006512
S/G/Y/R/B/O	NT_009731	AC006512	6905405	3	RH52386	12	44.99			12	78.00	1		AC006512
S/G/Y/R/B/O	NT_009731	AC006512	6905504	3	RH39872	12	45.71					1		AC006512
S/G/Y/R/B/O	NT_009731		-		RH10929	12	43.35					0
S/G/Y/R/B/O	NT_009731		-		AFMB052YG5					12	68.80	0
S/G/Y/R/B/O	NT_009731		-		RH17505	12	45.71					1	AC018653,	AC018653
S/G/Y/R/B/O	NT_009731		-		CHLC.GATA7F09.414					12	69.00	0
S/G/Y/R/B/O	NT_009731		-		RH17663	12	45.71					0
S/G/Y/R/B/O	NT_009731		-		RH17725	12	39.88					0	AC005840, AC006064,	AC005840, AC006064, L24494
S/G/Y/R/B/O	NT_009731		-		RH20102	12	45.27			12	77.80	1	AC018653,	AC018653
S/G/Y/R/B/O	NT_009731		-		RH26195	12	43.35					0	AC079387, AC079387,	AC079387, AC079387
S/G/Y/R/B/O	NT_009731		-		WI-8378					12	80.60	1	AC018653,	AC018653
S/G/Y/R/B/O	NT_009731		-		RH28308	12	45.71					1	AC007782,	AC007782
S/G/Y/R/B/O	NT_009731		-		RH39744	12	45.60					0
S/G/Y/R/B/O	NT_009731		-		RH39870	12	45.60					0
S/G/Y/R/B/O	NT_009731		-		RH46958	12	45.71					0
S/G/Y/R/B/O	NT_009731		-		RH48486	12	41.32					0
S/G/Y/R/B/O	NT_009731		-		RH48707	12	45.10					0

NT_009731 (cont)

Links	Contig	Chr Start	STS Marker	GM Chr	GM99 GB4	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_009731	-	RH48724	12	43.35			0
S/G/Y/R/B/O	NT_009731	-	RH52559	12	45.05	12	80.90	1	AC006517,	AC006517
S/G/Y/R/B/O	NT_009731	-	RH52878	12	45.71	12	82.80	1	AC018653,	AC018653
S/G/Y/R/B/O	NT_009731	-	RH66488	12	40.88			1	AC006560, AC007539,	AC006560, AC007539
S/G/Y/R/B/O	NT_009731	-	RH67184	12	45.21			0
S/G/Y/R/B/O	NT_009731	-	RH67596	12	45.71			1	AC018653,	AC018653
S/G/Y/R/B/O	NT_009731	-	RH71279	12	43.35			0
S/G/Y/R/B/O	NT_009731	-	RH76417	12	44.76			0
S/G/Y/R/B/O	NT_009731	-	RH78070	12	45.71			1	AC018653,	AC018653
S/G/Y/R/B/O	NT_009731	-	RH78707	12	45.71			0
S/G/Y/R/B/O	NT_009731	-	RH91344	12	36.27			0	AC006057, AL445189,	AC006057, AL133266, AL158137, AL445189
S/G/Y/R/B/O	NT_009731	-	RH91884	12	43.35			1	AC006927,	AC006927
S/G/Y/R/B/O	NT_009731	-	RH93703	12	39.88			0