Home    Genome Browser    BLAT Search    Help
  Chromosome 12 - RH Maps - Single Contig
 

Chromosome 12 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_009759 NT_009738 NT_024413 NT_033253 NT_009731 NT_009702 NT_009714 NT_033252
NT_027128 NT_024397 NT_030810 NT_009700 NT_030814 NT_024382 NT_030804 NT_026404
NT_009666 NT_009471 NT_033254 NT_033256 NT_033255 NT_033247 NT_024380 NT_025869
NT_024352 NT_009486 NT_024370 NT_028332 NT_009781 NT_030809 NT_009784 NT_009785
NT_009526 NT_026397 NT_024417 NT_026409 NT_009782 NT_009609 NT_030118 NT_009563
NT_009458 NT_009485 NT_009509 NT_009410 NT_024362 NT_028337 NT_009441 NT_024372
NT_009432 NT_027130 NT_009711 NT_009506 NT_030813 NT_027129 NT_009616 NT_009561
NT_029419 NT_009540 NT_009528 NT_015310 NT_009456 NT_029428 NT_024375 NT_009593
NT_033251 NT_024460 NT_024381 NT_024354 NT_030815 NT_024373 NT_009551 NT_019546
NT_029418 NT_024420 NT_024356 NT_026408 NT_024480 NT_026396 NT_024454 NT_025864
NT_009538 NT_030122 NT_024363 NT_029420 NT_024400 NT_009729 NT_019555 NT_009447
NT_009513 NT_009690 NT_015316 NT_030816 NT_009575 NT_024394 NT_033258 NT_009681
NT_009743 NT_033257 NT_024383 NT_030807 NT_030124 NT_009660 NT_033245 NT_009770
NT_009601 NT_009654 NT_030806 NT_029421 NT_009436 NT_009775 NT_028327 NT_009487
NT_009438 NT_009464 NT_033248 NT_009755 NT_009534 NT_009482 NT_024376 NT_009523
NT_024369 NT_033246 NT_033250 NT_027131 NT_009455 NT_024477


  NT_029419
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_029419AC079454688180073          
S/G/Y/R/B/O NT_029419AC023163688728263          
S/G/Y/R/B/O NT_029419AC005294689408903          
S/G/Y/R/B/O NT_029419AC007458690652653RH33843  122765.00  1 AC007458
S/G/Y/R/B/O NT_029419AC022511692896013RH9292212277.77    1 AC022511
S/G/Y/R/B/O NT_029419AC022511692973123RH5298812288.79    1 AC022511
S/G/Y/R/B/O NT_029419AC022511692973123WI-17450    12385.601 AC022511
S/G/Y/R/B/O NT_029419AC008033693444233          
S/G/Y/R/B/O NT_029419AC015550695154073CHLC.GATA3F02.41    12387.201AC090061, AC015550, AC090061
S/G/Y/R/B/O NT_029419AC015550695837053RH2858312287.98    1AC090061, AC015550, AC090061
S/G/Y/R/B/O NT_029419AC015550696071213RH5261012288.48    1AC090061, AC015550, AC079455, AC090061
S/G/Y/R/B/O NT_029419AC015550696071213SGC32780    12385.601AC090061, AC015550, AC079455, AC090061
S/G/Y/R/B/O NT_029419AC015550696071213RH32515  122797.00  1AC090061, AC015550, AC079455, AC090061
S/G/Y/R/B/O NT_029419AC090061696314501          
S/G/Y/R/B/O NT_029419AC025423696772383RH5257612289.40  12388.701AC016258, AC078861, AC016258, AC025423, AC026121, AC078861
S/G/Y/R/B/O NT_029419AC025423696774553RH4582512289.64    1AC016258, AC078861, AC016258, AC025423, AC026121, AC078861
S/G/Y/R/B/O NT_029419AC025423696964153RH9327112280.75    1AC016258, AC016258, AC025423, AC026121
S/G/Y/R/B/O NT_029419AC025423696969753RH6582812289.85    1AC016258, AC016258, AC025423, AC026121
S/G/Y/R/B/O NT_029419AC025423696974913RH3973112276.75    2AC078861, AC025423, AC026121, AC078861
S/G/Y/R/B/O NT_029419AC025423696982113RH4494212289.11    1AC016258, AC016258, AC025423, AC026121
S/G/Y/R/B/O NT_029419AC025423697035633RH10421612290.03    1AC078861, AC025423, AC026121, AC078861
S/G/Y/R/B/O NT_029419AC025423697069493RH5257412289.11  12388.701AC016258, AC078861, AC016258, AC025423, AC026121, AC078861
S/G/Y/R/B/O NT_029419AC025423697074953RH9865912278.10    1AC016258, AC078861, AC016258, AC025423, AC026121, AC078861
S/G/Y/R/B/O NT_029419AC025423697082633RH4467412289.64    1AC016258, AC078861, AC016258, AC025423, AC026121, AC078861
S/G/Y/R/B/O NT_029419AC025423697092633RH7583512292.30    1AC016258, AC078861, AC016258, AC025423, AC026121, AC078861
S/G/Y/R/B/O NT_029419AC025423697092693RH4452712289.93    1AC016258, AC078861, AC016258, AC025423, AC026121, AC078861
S/G/Y/R/B/O NT_029419AC016258697871081          
S/G/Y/R/B/O NT_029419AC078861699627361RH4484112288.48    1 AC078861
S/G/Y/R/B/O NT_029419AC078861699644061RH9874312289.64    1 AC078861
S/G/Y/R/B/O NT_029419AC078861699789961RH6933212279.71    1 AC078861
S/G/Y/R/B/O NT_029419AC078861699807811RH3974212288.48    1 AC078861
S/G/Y/R/B/O NT_029419AC078861699808501RH10311212282.60    1 AC078861
S/G/Y/R/B/O NT_029419AC078861699910221RH3973112276.75    2AC025423, AC025423, AC026121, AC078861
S/G/Y/R/B/O NT_029419AC025714698426731          
S/G/Y/R/B/O NT_029419 - RH10280212276.38    1AC016153, AC025263, AC008730, AC016153, AC025263
S/G/Y/R/B/O NT_029419 - RH1028512281.99    1AC020623, AC027295, AC078815, AC020623, AC027295, AC069245, AC078815
S/G/Y/R/B/O NT_029419 - RH10312912282.41    1AC025603, AC078889, AC092877, AC012264, AC025603, AC078889, AC092877
S/G/Y/R/B/O NT_029419 - RH10350812278.10    1AC022366, AC022506, AC022366, AC022506
S/G/Y/R/B/O NT_029419 - RH10392812289.11    0  
S/G/Y/R/B/O NT_029419 - RH10418112287.98    0  
S/G/Y/R/B/O NT_029419 - RH1755212282.93    1AC078927, AC012264, AC078927
S/G/Y/R/B/O NT_029419 - RH1796912277.02    1AC016153, AC018921, AC008730, AC016153, AC018921
S/G/Y/R/B/O NT_029419 - RH2564612276.81    1AC011612, AC025569, AC011612, AC025569
S/G/Y/R/B/O NT_029419 - RH2566912277.77    0AC025576, AC025576, AC026114, AC055724
S/G/Y/R/B/O NT_029419 - RH2582212278.10    1AC011603, AC025256, AC011603, AC025256, AC073610
S/G/Y/R/B/O NT_029419 - RH2618412289.54    1AC020623, AC027295, AC078815, AC020623, AC027295, AC069245, AC078815
S/G/Y/R/B/O NT_029419 - RH2658212288.17    1AC027179, AC027179
S/G/Y/R/B/O NT_029419 - RH2709812287.77    1AC012158, AC012158, AC026114, AC055724
S/G/Y/R/B/O NT_029419 - RH3976312278.42    1AC022608, AC090673, AC022608, AC090673
S/G/Y/R/B/O NT_029419 - RH3983712277.02    1AC025263, AC008730, AC025263


  NT_029419 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_029419 - RH3983912279.50    0  
S/G/Y/R/B/O NT_029419 - RH3986512277.46    0  
S/G/Y/R/B/O NT_029419 - RH3991512288.19    1AC025262, AC022510, AC025262, AC068795
S/G/Y/R/B/O NT_029419 - RH4194012282.80    0 AC007617
S/G/Y/R/B/O NT_029419 - RH4242412288.79    1AC022513, AC007617, AC022513
S/G/Y/R/B/O NT_029419 - RH4421512287.88    1AC090710, AC025190, AC090710
S/G/Y/R/B/O NT_029419 - RH4444312288.48    0  
S/G/Y/R/B/O NT_029419 - RH4445212288.19    0  
S/G/Y/R/B/O NT_029419 - RH4452412288.19    1AC025576, AC025576, AC026114, AC055724
S/G/Y/R/B/O NT_029419 - RH4464412289.64    1AC018658, AC025077, AC025838, AC048342, AC079035, AC018658, AC025077, AC025838, AC048342, AC079035
S/G/Y/R/B/O NT_029419 - RH4473412285.35    1AC020623, AC027295, AC078815, AC020623, AC027295, AC069245, AC078815
S/G/Y/R/B/O NT_029419 - RH4485712290.13    1  
S/G/Y/R/B/O NT_029419 - RH4487412288.19    1AC025262, AC022510, AC025262, AC068795
S/G/Y/R/B/O NT_029419 - RH4496512289.64    1AC018658, AC025077, AC048342, AC018658, AC025077, AC048342
S/G/Y/R/B/O NT_029419 - RH4498812288.17    1AC027179, AC027179
S/G/Y/R/B/O NT_029419 - RH4507512277.56    0 AC026340
S/G/Y/R/B/O NT_029419 - RH4559712290.24    0AC016258, AC025423, AC078861, AC016258, AC025423, AC026121, AC078861
S/G/Y/R/B/O NT_029419 - RH4589212277.56    1AC025165, AC025165, AC026340
S/G/Y/R/B/O NT_029419 - RH4762212289.11    1AC078887, AC078983, AC026491, AC078879, AC078887, AC078983
S/G/Y/R/B/O NT_029419 - RH4763312287.77    1AC090023, AC090023
S/G/Y/R/B/O NT_029419 - RH4811612277.56    1AC025165, AB005990, AB006987, AC025165, AC026340, AF027152
S/G/Y/R/B/O NT_029419 - RH4812412282.93    1AC022608, AC090673, AC022608, AC090673, L46353, U28754
S/G/Y/R/B/O NT_029419 - RH4873412290.13    0  
S/G/Y/R/B/O NT_029419 - RH5247512282.41    1AC012158, AC012158, AC026114, AC055724
S/G/Y/R/B/O NT_029419 - RH5250512277.46    1AC025263, AC025263
S/G/Y/R/B/O NT_029419 - RH5265212277.46    1AC016153, AC008730, AC016153
S/G/Y/R/B/O NT_029419 - RH5266312287.26    1AC022508, AC022508
S/G/Y/R/B/O NT_029419 - RH5272812287.98    1AC078887, AC078983, AC026491, AC078879, AC078887, AC078983
S/G/Y/R/B/O NT_029419 - RH5274712288.40    1AC025419, AC025419
S/G/Y/R/B/O NT_029419 - RH5275612289.61    1AC078887, AC078983, AC026491, AC078879, AC078887, AC078983
S/G/Y/R/B/O NT_029419 - RH5287012276.49    1AC018921, AC022160, AC018921, AC022160, U91327
S/G/Y/R/B/O NT_029419 - RH5287312287.88    1AC025603, AC078889, AC092877, AC012264, AC025603, AC078889, AC092877
S/G/Y/R/B/O NT_029419 - RH5288212289.08    1 AC068795
S/G/Y/R/B/O NT_029419 - RH5289212282.09    1AC020623, AC027295, AC020623, AC027295, AC069245
S/G/Y/R/B/O NT_029419 - RH5290212288.69    1AC078777, AC078777
S/G/Y/R/B/O NT_029419 - RH5293312287.77    1AC090710, AC025190, AC090710
S/G/Y/R/B/O NT_029419 - RH5301312281.49    1AC078927, AC012264, AC078927
S/G/Y/R/B/O NT_029419 - RH5301712276.27    1AC025263, AC025263
S/G/Y/R/B/O NT_029419 - RH5307812278.31    1AC018805, AC022506, AC063917, AC018805, AC022506, AC063917
S/G/Y/R/B/O NT_029419 - RH5310212288.40    1AC012158, AC012158, AC026114, AC055724
S/G/Y/R/B/O NT_029419 - RH6563812281.99    1AC078962, AC068795, AC078962
S/G/Y/R/B/O NT_029419 - RH6941912277.77    1AC022608, AC022608, L46353, U28754
S/G/Y/R/B/O NT_029419 - RH6972512277.02    1AC016153, AC018921, AC008730, AC016153, AC018921, U91327
S/G/Y/R/B/O NT_029419 - RH7448612285.55    0  
S/G/Y/R/B/O NT_029419 - RH7776912277.77    0  
S/G/Y/R/B/O NT_029419 - RH7788512290.13    1AC018658, AC025077, AC048342, AC079035, AC018658, AC025077, AC048342, AC079035
S/G/Y/R/B/O NT_029419 - RH7815212287.88    1AC025603, AC025603
S/G/Y/R/B/O NT_029419 - RH7883812287.46    1AC078927, AC012264, AC078927
S/G/Y/R/B/O NT_029419 - RH9145012288.50    1AC006483, AC006483, AC073481
S/G/Y/R/B/O NT_029419 - RH9228512288.90    1AC078777, AC078777


  NT_029419 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_029419 - RH9229412277.56    1AC083805, AC084033, AC083805, AC084033
S/G/Y/R/B/O NT_029419 - RH9234012281.25    1AC020609, AC026116, AC020609, AC026116, AC068778, AC078827
S/G/Y/R/B/O NT_029419 - RH986112277.61    0  
S/G/Y/R/B/O NT_029419 - RH9863012289.82    0  
S/G/Y/R/B/O NT_029419 - RH9869512288.50    1AC084357, AC084357, AL451067
S/G/Y/R/B/O NT_029419 - RH9897012277.77    0AC012158, AC012158, AC026114, AC055724