Chromosome 12 - RH Maps - Single Contig

Chromosome 12 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_009759	NT_009738	NT_024413	NT_033253	NT_009731	NT_009702	NT_009714	NT_033252
NT_027128	NT_024397	NT_030810	NT_009700	NT_030814	NT_024382	NT_030804	NT_026404
NT_009666	NT_009471	NT_033254	NT_033256	NT_033255	NT_033247	NT_024380	NT_025869
NT_024352	NT_009486	NT_024370	NT_028332	NT_009781	NT_030809	NT_009784	NT_009785
NT_009526	NT_026397	NT_024417	NT_026409	NT_009782	NT_009609	NT_030118	NT_009563
NT_009458	NT_009485	NT_009509	NT_009410	NT_024362	NT_028337	NT_009441	NT_024372
NT_009432	NT_027130	NT_009711	NT_009506	NT_030813	NT_027129	NT_009616	NT_009561
NT_029419	NT_009540	NT_009528	NT_015310	NT_009456	NT_029428	NT_024375	NT_009593
NT_033251	NT_024460	NT_024381	NT_024354	NT_030815	NT_024373	NT_009551	NT_019546
NT_029418	NT_024420	NT_024356	NT_026408	NT_024480	NT_026396	NT_024454	NT_025864
NT_009538	NT_030122	NT_024363	NT_029420	NT_024400	NT_009729	NT_019555	NT_009447
NT_009513	NT_009690	NT_015316	NT_030816	NT_009575	NT_024394	NT_033258	NT_009681
NT_009743	NT_033257	NT_024383	NT_030807	NT_030124	NT_009660	NT_033245	NT_009770
NT_009601	NT_009654	NT_030806	NT_029421	NT_009436	NT_009775	NT_028327	NT_009487
NT_009438	NT_009464	NT_033248	NT_009755	NT_009534	NT_009482	NT_024376	NT_009523
NT_024369	NT_033246	NT_033250	NT_027131	NT_009455	NT_024477

NT_009702

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_009702	AC092111	7365444	1	RH92175	12	59.74					2	AC092745, AC105916,	AC080046, AC092111, AC092745, AC105916
S/G/Y/R/B/O	NT_009702	AC092111	7374210	1	RH16840	12	49.79					2	AC092745,	AC080046, AC092111, AC092745
S/G/Y/R/B/O	NT_009702	AC006511	7074026	3	RH103823	12	49.28					1		AC006511
S/G/Y/R/B/O	NT_009702	AC006511	7095987	3	WI-18562					12	83.40	1		AC006511
S/G/Y/R/B/O	NT_009702	AC006511	7095987	3	RH52716	12	59.74					1		AC006511
S/G/Y/R/B/O	NT_009702	AC006511	7096055	3	RH44757	12	48.63					1		AC006511
S/G/Y/R/B/O	NT_009702	AC006511	7100242	3	RH103599	12	47.56					1		AC006511
S/G/Y/R/B/O	NT_009702	AC006511	7149391	3	CHLC.GATA8A09.430					12	90.00	1		AC006511
S/G/Y/R/B/O	NT_009702	AC006511	7190730	3	RH47029	12	45.10					1
S/G/Y/R/B/O	NT_009702	AC007536	7221582	3	RH14852			12	524.00			2		AC007536, AF274889
S/G/Y/R/B/O	NT_009702	AC007536	7221689	3	RH78158	12	46.50					2	AC006517,	AC006517, AC007536, AF274889
S/G/Y/R/B/O	NT_009702	AC007536	7221727	3	RH68461	12	47.27					2	AC006517,	AC006517
S/G/Y/R/B/O	NT_009702	AC007536	7221817	3	RH80536	12	45.05					1		AC007536, AF274889
S/G/Y/R/B/O	NT_009702	AC007536	7233211	3	RH14858			12	515.00	12	84.20	1		AC007536, AF274892
S/G/Y/R/B/O	NT_009702	AC007536	7233211	3	RH52614	12	45.60					1		AC007536, AF274892
S/G/Y/R/B/O	NT_009702	AC007536	7235114	3	RH68326	12	47.75					1		AC007536, AF274892
S/G/Y/R/B/O	NT_009702	AC007536	7235216	3	RH69095	12	48.08					1		AC007536, AF274892
S/G/Y/R/B/O	NT_009702	AC007536	7248637	3	RH102361	12	47.34					2	AC006517,	AC006517, AC007536
S/G/Y/R/B/O	NT_009702	AC092745	7399876	1
S/G/Y/R/B/O	NT_009702	AC092865	7489235	1
S/G/Y/R/B/O	NT_009702	AC092490	7495807	1
S/G/Y/R/B/O	NT_009702	AC006513	7554341	1	RH39891	12	59.74					1	AC092490,	AC006513, AC092490
S/G/Y/R/B/O	NT_009702	AC006513	7559716	1	RH69356	12	59.74					1	AC092490,	AC006513, AC092490
S/G/Y/R/B/O	NT_009702	AC013443	7700518	1	RH33081			12	567.00			2	AC011742,	AC011742
S/G/Y/R/B/O	NT_009702	AC013443	7700518	1	SGC34066					2	147.70	2	AC011742,	AC011742
S/G/Y/R/B/O	NT_009702	AC013443	8462760	1	WI-17490					12	100.80	1		AC013443, AC092112
S/G/Y/R/B/O	NT_009702	AC013443	8462760	1	RH53058	12	47.56					1		AC013443, AC092112
S/G/Y/R/B/O	NT_009702	AC013443	8463505	1	RH99231	12	63.08					1		AC013443, AC092112
S/G/Y/R/B/O	NT_009702	AC013443	8464612	1	RH38560			12	550.00			1		AC013443
S/G/Y/R/B/O	NT_009702	AC013443	8464657	1	RH39897	12	49.36					1		AC013443
S/G/Y/R/B/O	NT_009702	AC013443	8489870	1	RH103461	12	47.56					1	AC092746,	AB040430, AC013443, AC092184, AC092746
S/G/Y/R/B/O	NT_009702	AC092746	7664831	1	RH102728	12	63.08					1		AC092746
S/G/Y/R/B/O	NT_009702	AC092746	7749467	1	RH98919	12	45.38					2	AC005034,	AC005034, AC092746
S/G/Y/R/B/O	NT_009702	AC006581	7965853	3	RH39905	12	47.12					1		AC006581
S/G/Y/R/B/O	NT_009702	AC006581	8019244	3	RH31225			12	555.00			1	AC007436,	AC006581, AC007436
S/G/Y/R/B/O	NT_009702	AC006581	8026084	3	RH65666	12	47.56					1	AC007436,	AC006581, AC007436
S/G/Y/R/B/O	NT_009702	AC007436	8129551	3	SGC33440					12	100.90	1		AC007436
S/G/Y/R/B/O	NT_009702	AC007436	8129551	3	RH52636	12	49.90					1		AC007436
S/G/Y/R/B/O	NT_009702	AC007436	8129551	3	RH70338	12	59.74					1		AC007436
S/G/Y/R/B/O	NT_009702	AC010175	8195526	3	WI-4882					12	96.10	1		AC010175
S/G/Y/R/B/O	NT_009702	AC009533	8353764	3	RH93475	12	52.70					1		AC009533
S/G/Y/R/B/O	NT_009702	AC009533	8358061	3	RH31580			12	576.00			1		AC009533
S/G/Y/R/B/O	NT_009702	AC009533	8381508	3	RH92800	12	52.49					1		AC009533
S/G/Y/R/B/O	NT_009702		-		RH1393			12	499.00			1	AC018653,	AC018653
S/G/Y/R/B/O	NT_009702		-		SGC31674					12	99.60	0	AC007436,	AC007436
S/G/Y/R/B/O	NT_009702		-		RH2006			12	507.00			0