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  Chromosome 12 - RH Maps - Single Contig
 

Chromosome 12 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_009759 NT_009738 NT_024413 NT_033253 NT_009731 NT_009702 NT_009714 NT_033252
NT_027128 NT_024397 NT_030810 NT_009700 NT_030814 NT_024382 NT_030804 NT_026404
NT_009666 NT_009471 NT_033254 NT_033256 NT_033255 NT_033247 NT_024380 NT_025869
NT_024352 NT_009486 NT_024370 NT_028332 NT_009781 NT_030809 NT_009784 NT_009785
NT_009526 NT_026397 NT_024417 NT_026409 NT_009782 NT_009609 NT_030118 NT_009563
NT_009458 NT_009485 NT_009509 NT_009410 NT_024362 NT_028337 NT_009441 NT_024372
NT_009432 NT_027130 NT_009711 NT_009506 NT_030813 NT_027129 NT_009616 NT_009561
NT_029419 NT_009540 NT_009528 NT_015310 NT_009456 NT_029428 NT_024375 NT_009593
NT_033251 NT_024460 NT_024381 NT_024354 NT_030815 NT_024373 NT_009551 NT_019546
NT_029418 NT_024420 NT_024356 NT_026408 NT_024480 NT_026396 NT_024454 NT_025864
NT_009538 NT_030122 NT_024363 NT_029420 NT_024400 NT_009729 NT_019555 NT_009447
NT_009513 NT_009690 NT_015316 NT_030816 NT_009575 NT_024394 NT_033258 NT_009681
NT_009743 NT_033257 NT_024383 NT_030807 NT_030124 NT_009660 NT_033245 NT_009770
NT_009601 NT_009654 NT_030806 NT_029421 NT_009436 NT_009775 NT_028327 NT_009487
NT_009438 NT_009464 NT_033248 NT_009755 NT_009534 NT_009482 NT_024376 NT_009523
NT_024369 NT_033246 NT_033250 NT_027131 NT_009455 NT_024477


  NT_009458
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_009458AC023055573849531RH4428812245.84    1AC027529, AC023055, AC027529, X65032
S/G/Y/R/B/O NT_009458AC023055574074121RH38007  122215.00  1 AC023055
S/G/Y/R/B/O NT_009458AC023055574076001RH6585712243.87    1 AC023055
S/G/Y/R/B/O NT_009458AC023055574093901RH5256912245.02  12343.401 AC023055
S/G/Y/R/B/O NT_009458AC023055574097531RH5277112246.38  12342.101 AC023055
S/G/Y/R/B/O NT_009458AC023055574097731RH8035012243.98    1 AC023055
S/G/Y/R/B/O NT_009458AC023055574599561RH5311012245.24  12344.501 AC023055
S/G/Y/R/B/O NT_009458AC023055574624511RH5299212245.02  12342.201 AC023055
S/G/Y/R/B/O NT_009458AC025162571539521RH5262812246.43  12345.301AC034102, AC025162, AC034102
S/G/Y/R/B/O NT_009458AC025162571547491RH5298412248.20122269.0012344.101AC034102, AC025162, AC034102
S/G/Y/R/B/O NT_009458AC025162571550031RH3977112247.48    1AC034102, AC025162, AC034102
S/G/Y/R/B/O NT_009458AC025162572322781RH6985112247.74    1 AC025162
S/G/Y/R/B/O NT_009458AC025162572335041RH4576812247.74    1AC027529, AC034102, AC025162, AC027529, AC034102
S/G/Y/R/B/O NT_009458AC025162573137201RH3978512245.84    1AC027529, AC025162, AC027529, U20093
S/G/Y/R/B/O NT_009458AC025162573137861RH13787  122269.00  1AC027529, AC025162, AC027529, U20093
S/G/Y/R/B/O NT_009458AC025162573140731RH3970312245.84    1AC027529, AC025162, AC027529
S/G/Y/R/B/O NT_009458AC025162573141121RH7597612246.11    1AC027529, AC025162, AC027529
S/G/Y/R/B/O NT_009458AC025162573554441RH6820712245.84    1AC023055, AC027529, AC023055, AC025162, AC027529
S/G/Y/R/B/O NT_009458AC025162573732591RH10340112245.84    1AC023055, AC027529, AC023055, AC025162, AC027529
S/G/Y/R/B/O NT_009458AC034102571366651RH4488212245.84    1 AC034102
S/G/Y/R/B/O NT_009458AC034102571803261RH7570312245.84    1 AC034102
S/G/Y/R/B/O NT_009458AC034102571804421RH10317112247.48    1 AC034102
S/G/Y/R/B/O NT_009458AC034102571854401RH4635212249.39    1 AC034102
S/G/Y/R/B/O NT_009458AC034102571855381RH5240812247.48  12347.901 AC034102
S/G/Y/R/B/O NT_009458AC034102571885431RH8020412247.20    1AC025162, AC025162, AC034102
S/G/Y/R/B/O NT_009458AC034102572485041RH31242  122262.00  1AC025162, AC027529, AC025162, AC027529, AC034102
S/G/Y/R/B/O NT_009458AC034102572648771RH4478512245.84    1AC025162, AC025162, AC034102
S/G/Y/R/B/O NT_009458AC034102572648911RH7542012250.04    1AC025162, AC025162, AC034102
S/G/Y/R/B/O NT_009458AC034102572653171RH690381696.63    1AC025162, AC025162, AC034102, AY056018
S/G/Y/R/B/O NT_009458AC034102572653421RH7136612247.74    1AC025162, AC025162, AC034102, AY056018
S/G/Y/R/B/O NT_009458AC034102572993671RH9031  122269.00  1AC025162, AC027529, AC025162, AC027529, AC034102
S/G/Y/R/B/O NT_009458AC034102573003391RH7085812245.84    1AC025162, AC025162, AC034102
S/G/Y/R/B/O NT_009458AC073620565280031RH7833512252.42    1 AC073620, M19483, M27132
S/G/Y/R/B/O NT_009458AC073620566729051RH5251312255.14  12352.301AC090681, AC073620, AC090681, AC097104
S/G/Y/R/B/O NT_009458AC073620566742741RH2668112252.42    1AC090681, AC073620, AC090681, AC097104
S/G/Y/R/B/O NT_009458AC073620566746191RH6986812252.42    1AC090681, AC073620, AC090681, AC097104
S/G/Y/R/B/O NT_009458AC073620566761431RH7504412247.37    1AC090681, AC073620, AC090681, AC097104
S/G/Y/R/B/O NT_009458AC073620566769331RH8072412248.34    1 AC097104
S/G/Y/R/B/O NT_009458AC073620566770371RH4453312252.42    1AC090681, AC073620, AC090681, AC097104
S/G/Y/R/B/O NT_009458AC073620566808061RH10260312252.42    1AC027473, AC090681, AC027473, AC073620, AC090681, AC097104
S/G/Y/R/B/O NT_009458AC073620566822891RH1722  123868.00  1AC027473, AC090681, AC027473, AC073620, AC090681, AC097104
S/G/Y/R/B/O NT_009458AC090681564437461          
S/G/Y/R/B/O NT_009458AC021586565199571RH7535312252.00    1 AC021586
S/G/Y/R/B/O NT_009458AC021586567322911RH4530812252.42    1AC090681, AC021586, AC090681
S/G/Y/R/B/O NT_009458AC021586567527981RH4821912249.07    1 AC021586
S/G/Y/R/B/O NT_009458AC021586567821321RH9295312252.42    1AC090681, AC021586, AC090681
S/G/Y/R/B/O NT_009458AC025574565454001RH3976112249.32    1 AC025574
S/G/Y/R/B/O NT_009458AC025574565635351RH8081512247.26    1 AC025574, U18671
S/G/Y/R/B/O NT_009458AC025574565651111RH9911912248.88    1 AB030001, AC025574
S/G/Y/R/B/O NT_009458AC025574565665811RH9282912249.50    1 AB030001, AC025574


  NT_009458 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_009458AC073896566352811RH10408112247.74    1AC023500, AC025574, AC023500, AC025574, AC073896
S/G/Y/R/B/O NT_009458AC073896569999481RH1669412247.26    1AC023500, AC023500, AC073896
S/G/Y/R/B/O NT_009458AC073896571157671RH4778112247.20    1AC023500, AC034102, AC023500, AC034102, AC073896
S/G/Y/R/B/O NT_009458AC073896571175021RH7591012246.76    1AC023500, AC034102, AC023500, AC034102, AC073896
S/G/Y/R/B/O NT_009458AC073896571176321RH7479512247.37    1AC023500, AC034102, AC023500, AC034102, AC073896
S/G/Y/R/B/O NT_009458AC073896571176651RH6694712247.48    1AC023500, AC034102, AC023500, AC034102, AC073896
S/G/Y/R/B/O NT_009458AC073896571196041RH9058  122243.00  1AC023500, AC034102, AC023500, AC034102, AC073896, M22919
S/G/Y/R/B/O NT_009458AC073896571196191RH5297912247.20  12343.401AC023500, AC034102, AC023500, AC034102, AC073896
S/G/Y/R/B/O NT_009458AC023500565868611RH3989612247.48    1AC025574, AC073896, AC023500, AC025574, AC073896
S/G/Y/R/B/O NT_009458AC023500565891351RH6983512247.37    1AC025574, AC073896, AC023500, AC025574, AC073896
S/G/Y/R/B/O NT_009458AC023500566036441RH3987612247.48    1AC025574, AC073896, AC023500, AC025574, AC073896
S/G/Y/R/B/O NT_009458AC023500569834781RH2496712247.74    2AC020904, AC073896, AC020904, AC023500, AC025749, AC073896
S/G/Y/R/B/O NT_009458AC023500569835131RH1007412247.48    2AC020904, AC073896, AC020904, AC023500, AC025749, AC073896
S/G/Y/R/B/O NT_009458AC023500569844061RH32896  122255.00  1AC073896, AC023500, AC073896
S/G/Y/R/B/O NT_009458AC023500569844061RH5732220261.21  20297.401AC073896, AC023500, AC073896
S/G/Y/R/B/O NT_009458AC023500569844861RH4471912247.37    1AC073896, AC023500, AC073896
S/G/Y/R/B/O NT_009458AC023500569859981RH5292112251.08122215.0012350.901AC073896, AC023500, AC073896
S/G/Y/R/B/O NT_009458AC023500569861291RH4468712247.20    1AC073896, AC023500, AC073896
S/G/Y/R/B/O NT_009458AC023500570553471RH7018012247.48    1 AC023500
S/G/Y/R/B/O NT_009458AC023500570592041RH5298112251.49  12350.501AC073896, AC023500, AC073896
S/G/Y/R/B/O NT_009458AC023500570594471RH9839412247.63    1AC073896, AC023500, AC073896
S/G/Y/R/B/O NT_009458AC027473566868341          
S/G/Y/R/B/O NT_009458AC024884568993441RH5290812252.10    1AC025574, AC024884, AC025574
S/G/Y/R/B/O NT_009458AC024884568993441IB3526    12352.601AC025574, AC024884, AC025574
S/G/Y/R/B/O NT_009458AC024884568994651RH4881812250.04    1 AC024884
S/G/Y/R/B/O NT_009458AC024884569518221RH7028712252.42    1AC027473, AC024884, AC027473, AC097104
S/G/Y/R/B/O NT_009458AC024884569529601RH9304412252.10    1AC027473, AC024884, AC027473, AC097104
S/G/Y/R/B/O NT_009458AC024884569531901RH2592212249.21    1AC027473, AC024884, AC027473, AC097104
S/G/Y/R/B/O NT_009458AC024884569532991RH9349212252.42    1AC027473, AC024884, AC027473, AC097104
S/G/Y/R/B/O NT_009458AC027529573090051          
S/G/Y/R/B/O NT_009458AC073487574928643RH6741412243.87    1AC023055, AC023055, AC073487
S/G/Y/R/B/O NT_009458AC073487575044803RH4498112241.62    1AC023055, AC023055, AC073487
S/G/Y/R/B/O NT_009458AC073487575044853RH3969912241.62    1AC023055, AC023055, AC073487
S/G/Y/R/B/O NT_009458AC073487575050103RH993412241.95    1AC023055, AC023055, AC073487
S/G/Y/R/B/O NT_009458AC073487575062133RH5302212246.38    1AC023055, AC023055, AC073487
S/G/Y/R/B/O NT_009458AC073487575062133WI-21056    12312.501AC023055, AC023055, AC073487
S/G/Y/R/B/O NT_009458AC073487575097343RH9913712241.62    1AC023055, AC023055, AC073487
S/G/Y/R/B/O NT_009458AC073487575101533RH5307512246.54    1AC023055, AC023055, AC073487
S/G/Y/R/B/O NT_009458AC073487575101533SGC34566    12312.601AC023055, AC023055, AC073487
S/G/Y/R/B/O NT_009458AC073487575102443RH4741312241.62    1AC023055, AC023055
S/G/Y/R/B/O NT_009458AC073487575116443RH5308312246.17    1AC023055, AC023055, AC073487
S/G/Y/R/B/O NT_009458AC073487575116443WI-16726    12312.701AC023055, AC023055, AC073487
S/G/Y/R/B/O NT_009458AC073487575116693RH7829312245.84    1AC023055, AC023055, AC073487
S/G/Y/R/B/O NT_009458AC073487575117473RH2675312245.84    1AC023055, AC023055
S/G/Y/R/B/O NT_009458AC009779575290293WI-11203    12312.701 AC009779
S/G/Y/R/B/O NT_009458AC009779575373053RH5250212246.38  12342.201 AC009779, AF037062
S/G/Y/R/B/O NT_009458AC009779575373183RH6774812241.62    1 AC009779, AF037062
S/G/Y/R/B/O NT_009458AC009779575412323RH4192112245.84    1 AC009779, AF037062
S/G/Y/R/B/O NT_009458AC009779575769413RH7598412242.38    1 AC009779
S/G/Y/R/B/O NT_009458AC009779575774183RH5258612246.22    1 AC009779


  NT_009458 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_009458AC009779575774183WI-16635    12312.801 AC009779
S/G/Y/R/B/O NT_009458AC009779575774233RH4431312241.62    1 AC009779
S/G/Y/R/B/O NT_009458 - RH2852512245.35    0AC021647, AC025256, AC021647, AC025256, M74493
S/G/Y/R/B/O NT_009458 - RH3984112243.87    0  
S/G/Y/R/B/O NT_009458 - RH3985712247.48    1AL590233, AL590233
S/G/Y/R/B/O NT_009458 - RH4463912241.95    0  
S/G/Y/R/B/O NT_009458 - RH4500912251.18    0  
S/G/Y/R/B/O NT_009458 - RH4569612246.49    0AC025162, AC027529, AC025162, AC027529
S/G/Y/R/B/O NT_009458 - RH4749412247.48    0AC023500, AC025574, AC073896, AC023500, AC025574, AC073896
S/G/Y/R/B/O NT_009458 - RH4770512252.08    0  
S/G/Y/R/B/O NT_009458 - RH4791912245.18    0  
S/G/Y/R/B/O NT_009458 - RH4806312245.68    4AC010173, AC010173, AC011603, AC026125, AC026125, AP002364, AC010173, AC010173, AC011603, AC026125, AC026125, AP002364, X01703
S/G/Y/R/B/O NT_009458 - RH4816212249.21    1AC018805, AC018805
S/G/Y/R/B/O NT_009458 - RH4836812247.37    0AC023500, AC073896, AC023500, AC073896
S/G/Y/R/B/O NT_009458 - RH5248512247.26    1AC023237, AC023499, AC018673, AC022512, AC023237, AC023497, AC023499, AF417842, AJ011081, AL583823
S/G/Y/R/B/O NT_009458 - RH5288512248.88  12345.201AL358794, AL358794
S/G/Y/R/B/O NT_009458 - RH5305312247.74  12347.900AC025162, AC027529, AC034102, AC025162, AC027529, AC034102, U41448
S/G/Y/R/B/O NT_009458 - RH7121412247.26    0  
S/G/Y/R/B/O NT_009458 - RH7498512246.71    0  
S/G/Y/R/B/O NT_009458 - RH7569712245.84    0  
S/G/Y/R/B/O NT_009458 - RH7659112245.51    0AC009779, AC009779
S/G/Y/R/B/O NT_009458 - RH7675912249.61    0  
S/G/Y/R/B/O NT_009458 - RH7867412244.41    0  
S/G/Y/R/B/O NT_009458 - RH7985812247.26    0  
S/G/Y/R/B/O NT_009458 - RH8037712247.70    1AC025165, AC025165, AC026340
S/G/Y/R/B/O NT_009458 - RH8061012246.17    0AC034102, AC034102
S/G/Y/R/B/O NT_009458 - RH9263712245.84    0  
S/G/Y/R/B/O NT_009458 - RH9351512241.84    0  
S/G/Y/R/B/O NT_009458 - RH9822612245.84    0AC027529, AC027529
S/G/Y/R/B/O NT_009458 - RH9913212248.88    0