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  Chromosome 12 - RH Maps - Single Contig
 

Chromosome 12 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_009759 NT_009738 NT_024413 NT_033253 NT_009731 NT_009702 NT_009714 NT_033252
NT_027128 NT_024397 NT_030810 NT_009700 NT_030814 NT_024382 NT_030804 NT_026404
NT_009666 NT_009471 NT_033254 NT_033256 NT_033255 NT_033247 NT_024380 NT_025869
NT_024352 NT_009486 NT_024370 NT_028332 NT_009781 NT_030809 NT_009784 NT_009785
NT_009526 NT_026397 NT_024417 NT_026409 NT_009782 NT_009609 NT_030118 NT_009563
NT_009458 NT_009485 NT_009509 NT_009410 NT_024362 NT_028337 NT_009441 NT_024372
NT_009432 NT_027130 NT_009711 NT_009506 NT_030813 NT_027129 NT_009616 NT_009561
NT_029419 NT_009540 NT_009528 NT_015310 NT_009456 NT_029428 NT_024375 NT_009593
NT_033251 NT_024460 NT_024381 NT_024354 NT_030815 NT_024373 NT_009551 NT_019546
NT_029418 NT_024420 NT_024356 NT_026408 NT_024480 NT_026396 NT_024454 NT_025864
NT_009538 NT_030122 NT_024363 NT_029420 NT_024400 NT_009729 NT_019555 NT_009447
NT_009513 NT_009690 NT_015316 NT_030816 NT_009575 NT_024394 NT_033258 NT_009681
NT_009743 NT_033257 NT_024383 NT_030807 NT_030124 NT_009660 NT_033245 NT_009770
NT_009601 NT_009654 NT_030806 NT_029421 NT_009436 NT_009775 NT_028327 NT_009487
NT_009438 NT_009464 NT_033248 NT_009755 NT_009534 NT_009482 NT_024376 NT_009523
NT_024369 NT_033246 NT_033250 NT_027131 NT_009455 NT_024477


  NT_009540
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_009540AC019161700931921          
S/G/Y/R/B/O NT_009540AC022160703538461WI-14856    12390.201AC018921, AC018921, AC022160, U91327
S/G/Y/R/B/O NT_009540AC022160703538461RH5287012276.49    1AC018921, AC018921, AC022160, U91327
S/G/Y/R/B/O NT_009540AC022160703540231RH37777  122822.00  1 AC022160, U91327
S/G/Y/R/B/O NT_009540AC016153705180601RH5248612290.35  12390.201 AC008730, AC016153
S/G/Y/R/B/O NT_009540AC020656701402911RH5245812293.44  12393.501 AC020656
S/G/Y/R/B/O NT_009540AC020656701433701RH4719412291.71    1AC019161, AC019161, AC020656
S/G/Y/R/B/O NT_009540AC020656702238071RH5241512291.10122827.0012390.301AC019161, AC022160, AC019161, AC020656, AC022160, X14008
S/G/Y/R/B/O NT_009540AC020656702245541RH4527112291.39    1AC019161, AC022160, AC019161, AC020656, AC022160, X14008
S/G/Y/R/B/O NT_009540AC018921704300371RH33713  122689.00  1AC016153, AC016153, AC018921, U91327
S/G/Y/R/B/O NT_009540AC018921704481441RH5272912291.10  12390.301AC016153, AC016153, AC018921, U91327
S/G/Y/R/B/O NT_009540AC018921704500441RH5286112291.71  12390.201AC016153, AC016153, AC018921, U91327
S/G/Y/R/B/O NT_009540AC018921704605781RH6972512277.02    1AC016153, AC008730, AC016153, AC018921, U91327
S/G/Y/R/B/O NT_009540AC018921704718941RH5279012291.71  12390.301AC016153, AC008730, AC016153, AC018921
S/G/Y/R/B/O NT_009540AC018921705085201RH4893312291.10    1AC016153, AC008730, AC016153, AC018921
S/G/Y/R/B/O NT_009540AC018921705135091RH1796912277.02    1AC016153, AC008730, AC016153, AC018921
S/G/Y/R/B/O NT_009540AC025263705244603RH9378812292.25    1AC016153, AC008730, AC016153, AC025263
S/G/Y/R/B/O NT_009540AC025263705322853RH33063  122827.0012390.201AC016153, AC008730, AC016153
S/G/Y/R/B/O NT_009540AC025263705322853RH5265212277.46    1AC016153, AC008730, AC016153
S/G/Y/R/B/O NT_009540AC025263705324043RH4464212291.50    1AC016153, AC008730, AC016153, AC025263
S/G/Y/R/B/O NT_009540AC025263705420463RH10280212276.38    1AC016153, AC008730, AC016153, AC025263
S/G/Y/R/B/O NT_009540AC025263705564473RH5273712291.71122827.0012390.201AC016153, AC008730, AC016153, AC025263
S/G/Y/R/B/O NT_009540AC025263705565213RH6761712292.25    1AC016153, AC008730, AC016153, AC025263
S/G/Y/R/B/O NT_009540AC025263705566073RH4457712291.71    1AC016153, AC008730, AC016153, AC025263
S/G/Y/R/B/O NT_009540AC025263705772103RH3983712277.02    1 AC008730, AC025263
S/G/Y/R/B/O NT_009540AC025263706412013WI-16968    12390.101 AC025263
S/G/Y/R/B/O NT_009540AC025263706412013RH5250512277.46    1 AC025263
S/G/Y/R/B/O NT_009540AC025263706873923RH3982012294.80    1 AC025263
S/G/Y/R/B/O NT_009540AC025263706898763RH32573  122827.0012394.001 AC025263
S/G/Y/R/B/O NT_009540AC025263706898763RH5301712276.27    1 AC025263
S/G/Y/R/B/O NT_009540AC025263706935043SGC32465    12393.901 AC025263
S/G/Y/R/B/O NT_009540AC078922708213213RH4552712294.30    1AC024942, AC021279, AC024942, AC025159, AC078922, AC084755, AL611932
S/G/Y/R/B/O NT_009540AC024942708827473          
S/G/Y/R/B/O NT_009540AC012480709490151RH9314712295.46    1AC073972, AC012480, AC025159, AC073972, AL611932
S/G/Y/R/B/O NT_009540AC084032710611903RH9299712295.93    1AC012480, AC073972, AC012480, AC073972, AC084032
S/G/Y/R/B/O NT_009540AC073972711014281          
S/G/Y/R/B/O NT_009540AC073099712164891RH6835412275.95    1AC011612, AC011612, AC073099, AC092881
S/G/Y/R/B/O NT_009540AC073099712255131RH2564612276.81    1AC011612, AC025569, AC011612, AC025569
S/G/Y/R/B/O NT_009540AC011612711647531RH7640912297.60    1AC073099, AC011612, AC073099
S/G/Y/R/B/O NT_009540AC025569712879343RH2691412298.32    1AC011612, AC011612, AC025569
S/G/Y/R/B/O NT_009540AC025569713018273RH10301712296.22    1AC011612, AC011053, AC011612, AC025569
S/G/Y/R/B/O NT_009540AC025569713020133RH1671312298.00    1AC011612, AC011053, AC011612, AC025569
S/G/Y/R/B/O NT_009540AC025569713036643RH1691912296.22    1AC011612, AC011053, AC011612, AC025569
S/G/Y/R/B/O NT_009540AC025569713043623RH5266012294.52  12394.601AC011612, AC011053, AC011612, AC025569
S/G/Y/R/B/O NT_009540AC025569713044253RH5285912297.89  12395.801AC011612, AC011053, AC011612, AC025569
S/G/Y/R/B/O NT_009540AC025569713046043RH2560512274.81    1AC011612, AC011053, AC011612, AC025569
S/G/Y/R/B/O NT_009540AC025569713048363RH9433712299.13    1AC011612, AC011053, AC011612, AC025569
S/G/Y/R/B/O NT_009540AC025569714060683RH5298612296.26  12396.101 AC011053, AC015544, AC025569
S/G/Y/R/B/O NT_009540AC025569714061723RH4471612297.60    1 AC011053, AC015544, AC025569
S/G/Y/R/B/O NT_009540AC025569714062123RH2705212297.29    1 AC011053, AC015544, AC025569


  NT_009540 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_009540AC083809714430523RH9265912299.65    1 AC011053, AC015544, AC083809
S/G/Y/R/B/O NT_009540AC083809714896963RH31247  122839.00  1 AC015544, AC083809
S/G/Y/R/B/O NT_009540AC083809714969343CHLC.GATA69B02    12396.401 AC015544, AC083809
S/G/Y/R/B/O NT_009540AC083809715088753RH5260212299.65122839.0012396.401 AC015544, AC083809
S/G/Y/R/B/O NT_009540AC055123715631521RH4488612299.65    1AC090676, AC055123, AC090676
S/G/Y/R/B/O NT_009540AC090676716090661          
S/G/Y/R/B/O NT_009540AC084877716943673          
S/G/Y/R/B/O NT_009540AC055113718735791          
S/G/Y/R/B/O NT_009540AC025575720069043RH5241612299.65  12398.001AC041044, AC092917, AC025575, AC041044, AC079599, AC092917
S/G/Y/R/B/O NT_009540AC041044721031091          
S/G/Y/R/B/O NT_009540AC092917721273361          
S/G/Y/R/B/O NT_009540 - RH10417112291.97    0  
S/G/Y/R/B/O NT_009540 - RH14467  122692.00  1AC078927, AC012264, AC078927
S/G/Y/R/B/O NT_009540 - RH2672112295.13    0 More than 15
S/G/Y/R/B/O NT_009540 - RH14851  122685.00  1AC025603, AC092877, AC025603, AC092877
S/G/Y/R/B/O NT_009540 - RH4418612291.50    0  
S/G/Y/R/B/O NT_009540 - RH31246  122731.00  1AC073530, AC073530
S/G/Y/R/B/O NT_009540 - RH4456612291.10    0 U91327
S/G/Y/R/B/O NT_009540 - RH32515  122797.00  1AC015550, AC090061, AC015550, AC079455, AC090061
S/G/Y/R/B/O NT_009540 - RH4818312291.10    0  
S/G/Y/R/B/O NT_009540 - RH33430  122685.00  1AC025603, AC078889, AC092877, AC012264, AC025603, AC078889, AC092877
S/G/Y/R/B/O NT_009540 - RH5247212292.25    1AC012158, AC012158, AC026114, AC055724
S/G/Y/R/B/O NT_009540 - RH33843  122765.00  1AC007458, AC007458
S/G/Y/R/B/O NT_009540 - RH5271412292.52    1AL138875, AL138875
S/G/Y/R/B/O NT_009540 - RH575  122797.00  1AC022513, AC007617, AC022513
S/G/Y/R/B/O NT_009540 - RH8013  122692.00  1AC078927, AC012264, AC078927
S/G/Y/R/B/O NT_009540 - RH8948  122827.00  0AC019161, AC022160, AC019161, AC022160
S/G/Y/R/B/O NT_009540 - RH5291312299.03  12396.200  
S/G/Y/R/B/O NT_009540 - RH7827012292.47    2AC017029, AC026104, AC078814, AC017029, AC026104, AC078814
S/G/Y/R/B/O NT_009540 - RH7986112292.90    0AC026115, AC025658, AC026115
S/G/Y/R/B/O NT_009540 - RH8015412291.71    1AC012518, AC012518, AC026491, AC078879
S/G/Y/R/B/O NT_009540 - RH8037512292.04    1AC084357, AC084357, AL451067