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  Chromosome 12 - RH Maps - Single Contig
 

Chromosome 12 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_009759 NT_009738 NT_024413 NT_033253 NT_009731 NT_009702 NT_009714 NT_033252
NT_027128 NT_024397 NT_030810 NT_009700 NT_030814 NT_024382 NT_030804 NT_026404
NT_009666 NT_009471 NT_033254 NT_033256 NT_033255 NT_033247 NT_024380 NT_025869
NT_024352 NT_009486 NT_024370 NT_028332 NT_009781 NT_030809 NT_009784 NT_009785
NT_009526 NT_026397 NT_024417 NT_026409 NT_009782 NT_009609 NT_030118 NT_009563
NT_009458 NT_009485 NT_009509 NT_009410 NT_024362 NT_028337 NT_009441 NT_024372
NT_009432 NT_027130 NT_009711 NT_009506 NT_030813 NT_027129 NT_009616 NT_009561
NT_029419 NT_009540 NT_009528 NT_015310 NT_009456 NT_029428 NT_024375 NT_009593
NT_033251 NT_024460 NT_024381 NT_024354 NT_030815 NT_024373 NT_009551 NT_019546
NT_029418 NT_024420 NT_024356 NT_026408 NT_024480 NT_026396 NT_024454 NT_025864
NT_009538 NT_030122 NT_024363 NT_029420 NT_024400 NT_009729 NT_019555 NT_009447
NT_009513 NT_009690 NT_015316 NT_030816 NT_009575 NT_024394 NT_033258 NT_009681
NT_009743 NT_033257 NT_024383 NT_030807 NT_030124 NT_009660 NT_033245 NT_009770
NT_009601 NT_009654 NT_030806 NT_029421 NT_009436 NT_009775 NT_028327 NT_009487
NT_009438 NT_009464 NT_033248 NT_009755 NT_009534 NT_009482 NT_024376 NT_009523
NT_024369 NT_033246 NT_033250 NT_027131 NT_009455 NT_024477


  NT_009609
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_009609AC068297520762741WI-8280    12328.401 AC046135, AC068297
S/G/Y/R/B/O NT_009609AC068297520762741RH5282412226.06    1 AC046135, AC068297
S/G/Y/R/B/O NT_009609AC068297520763851RH1713612226.26    1 AC046135, AC068297
S/G/Y/R/B/O NT_009609AC068297520776961RH9429212226.06    1 AC046135, AC068297
S/G/Y/R/B/O NT_009609AC068297521828001WI-11703    12323.201AC010188, AC010188, AC046135, AC068297
S/G/Y/R/B/O NT_009609AC068297521828001RH5300412226.06    1AC010188, AC010188, AC046135, AC068297
S/G/Y/R/B/O NT_009609AC068297521902011SGC38117    12316.201AC010188, AC010188, AC046135, AC068297
S/G/Y/R/B/O NT_009609AC068297521902011RH5275512226.26    1AC010188, AC010188, AC046135, AC068297
S/G/Y/R/B/O NT_009609AC068297521903231RH4585412226.06    1AC010188, AC010188, AC046135, AC068297
S/G/Y/R/B/O NT_009609AC010188520837113          
S/G/Y/R/B/O NT_009609AC107031522544411          
S/G/Y/R/B/O NT_009609AC027750523129661          
S/G/Y/R/B/O NT_009609AC025097523593243WI-11123    12327.801AC027750, AC107031, AC025097, AC027750, AC107031
S/G/Y/R/B/O NT_009609AC025097523593243RH5290112226.06    1AC027750, AC107031, AC025097, AC027750, AC107031
S/G/Y/R/B/O NT_009609AC025097524620873RH578  122043.00  1AC027582, AC023053, AC025097, AC027582
S/G/Y/R/B/O NT_009609AC025097524620873RH4909012223.44    1AC027582, AC023053, AC025097, AC027582
S/G/Y/R/B/O NT_009609AC025097524959353WI-10864    12327.801AC027582, AC023053, AC025097, AC027582
S/G/Y/R/B/O NT_009609AC027582525253371          
S/G/Y/R/B/O NT_009609AC013758525637671          
S/G/Y/R/B/O NT_009609AC013421525979671RH32162  122067.0012316.201AC013758, AC013421, AC013758
S/G/Y/R/B/O NT_009609AC013421525979671RH5299712227.87    1AC013758, AC013421, AC013758
S/G/Y/R/B/O NT_009609AC027260526255681          
S/G/Y/R/B/O NT_009609AC068987526568963RH2598012227.76    1AC013421, AC013758, AC013421, AC013758, AC068987
S/G/Y/R/B/O NT_009609AC068987526574713RH7851312226.06    1AC013421, AC013758, AC013421, AC013758, AC068987
S/G/Y/R/B/O NT_009609AC068987526581553RH9294512226.06    1AC013421, AC013758, AC013421, AC013758, AC068987
S/G/Y/R/B/O NT_009609AC068987526588463WI-15800    12327.801AC013421, AC013758, AC013421, AC013758, AC068987
S/G/Y/R/B/O NT_009609AC068987526588463RH5270812226.06    1AC013421, AC013758, AC013421, AC013758, AC068987
S/G/Y/R/B/O NT_009609AC068987526594083RH4425612226.16    1AC013421, AC013758, AC013421, AC013758, AC068987
S/G/Y/R/B/O NT_009609AC068987526920663RH4550512227.66    1AC013421, AC013758, AC027260, AC013421, AC013758, AC027260, AC068987
S/G/Y/R/B/O NT_009609AC025259527394163RH32419  122062.0012327.801AC013421, AC027260, AC013421, AC025259, AC027260
S/G/Y/R/B/O NT_009609AC025259527394163RH5288812226.06    1AC013421, AC027260, AC013421, AC025259, AC027260
S/G/Y/R/B/O NT_009609AC025259527496923RH455333198.02    2AC013421, AC114399, AC013421, AC025259, AC114399
S/G/Y/R/B/O NT_009609AC025259527711713RH3987512227.66    1AC027260, AC025259, AC027260
S/G/Y/R/B/O NT_009609AC025259527712533RH7656912229.20    1AC027260, AC025259, AC027260
S/G/Y/R/B/O NT_009609AC025259527712623RH4655012227.87    1AC027260, AC025259, AC027260
S/G/Y/R/B/O NT_009609AC025259528384763RH6900012227.66    1AC019244, AC019244, AC025259, L31848
S/G/Y/R/B/O NT_009609AC025259528418763RH5289712227.66  12327.801AC019244, AC019244, AC025259
S/G/Y/R/B/O NT_009609AC025259528620553RH7525312229.20    1AC019244, AC078864, AC019244, AC025259, AC078864
S/G/Y/R/B/O NT_009609AC025259529010043RH8077812227.66    1AC019244, AC078864, AC019244, AC025259, AC078864
S/G/Y/R/B/O NT_009609AC025259529229683WI-6605    12316.101AC019244, AC078864, AC019244, AC025259, AC078864, AC080174
S/G/Y/R/B/O NT_009609AC025259529229683RH5246812227.97    1AC019244, AC078864, AC019244, AC025259, AC078864, AC080174
S/G/Y/R/B/O NT_009609AC025259529230363RH999812228.58    1AC019244, AC078864, AC019244, AC025259, AC078864, AC080174
S/G/Y/R/B/O NT_009609AC019244529293741          
S/G/Y/R/B/O NT_009609AC007101529310851          
S/G/Y/R/B/O NT_009609AP002519529578431RH9829112227.66    1AC007101, AC007101, AP002519, Y13621
S/G/Y/R/B/O NT_009609AP002519529585191RH1791412227.66    1AC007101, AC007101, Y13621
S/G/Y/R/B/O NT_009609AC078864529614961          
S/G/Y/R/B/O NT_009609AC021066531050403D12S368    12323.601AC007101, AC007101
S/G/Y/R/B/O NT_009609AC021066531050403RH327412227.79    1AC007101, AC007101
S/G/Y/R/B/O NT_009609AC021066531050403RH1085  122074.00  1AC007101, AC007101, AC021066


  NT_009609 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_009609AC021066531161463RH5309012227.66  12327.801AP002519, AC021066, AP002519
S/G/Y/R/B/O NT_009609AC068988531508611          
S/G/Y/R/B/O NT_009609AC055716531970453RH1113  122101.00  1  
S/G/Y/R/B/O NT_009609AC055716532305753RH7560112229.20    1AC068988, AC024196, AC055716, AC068988
S/G/Y/R/B/O NT_009609AC055716532305953RH10321212227.87    1AC068988, AC024196, AC055716, AC068988
S/G/Y/R/B/O NT_009609AC055716532454273WI-17855    12317.001AC068988, AC024196, AC055716, AC068988, AF304164
S/G/Y/R/B/O NT_009609AC055716532454273RH5263312227.97    1AC068988, AC024196, AC055716, AC068988, AF304164
S/G/Y/R/B/O NT_009609AC055716532454343RH1776512228.58    1AC068988, AC024196, AC055716, AC068988, AF237621, AF304164, M98776
S/G/Y/R/B/O NT_009609AC055716532493133RH1759312228.58    1AC068988, AC024196, AC055716, AC068988
S/G/Y/R/B/O NT_009609AC055715532754563RH2099  122101.00  1AC068988, AC024196, AC055715, AC068988, AF019084
S/G/Y/R/B/O NT_009609AC055715533543653RH10199512227.66    1 AC024196, AC055715
S/G/Y/R/B/O NT_009609AC055736533763593RH9905412227.66    1 AC024196, AC055736
S/G/Y/R/B/O NT_009609AC055736534055333RH7847  122067.00  1 AC024196, AC055736, AF274874, M28496
S/G/Y/R/B/O NT_009609AC055736534055363RH3970212227.66    1 AC024196, AC055736, M28496
S/G/Y/R/B/O NT_009609AC055736534055773RH7782312227.97    1 AC024196, AC055736, AF274874, M28496
S/G/Y/R/B/O NT_009609AC055736534294753RH1765612227.66    2AC027562, AC027562, AC027562, AC027562, AC055736, AC055736
S/G/Y/R/B/O NT_009609AC055736534330353RH1765712222.40    2AC027562, AC027562, AC027562, AC027562, AC055736, AC055736
S/G/Y/R/B/O NT_009609AC055736534430743CHLC.GATA11B02.1112    12327.801AC027562, AC027562, AC055736
S/G/Y/R/B/O NT_009609AC055736534489123RH1765612227.66    2AC027562, AC027562, AC027562, AC027562, AC055736, AC055736
S/G/Y/R/B/O NT_009609AC055736534514103RH33618  122086.0012317.201AC027562, AC027562
S/G/Y/R/B/O NT_009609AC055736534514103RH5264812227.97    1AC027562, AC027562
S/G/Y/R/B/O NT_009609AC055736534516973RH1765712222.40    2AC027562, AC027562, AC027562, AC027562, AC055736, AC055736
S/G/Y/R/B/O NT_009609AC055736534735453RH1740812227.66    1 AC055736
S/G/Y/R/B/O NT_009609AC055736534735873RH4420712227.87    1 AC055736
S/G/Y/R/B/O NT_009609AC078865535596203RH7488912227.79    1AC027562, AP002519, AC027562, AC078865, AP002519, Y19210
S/G/Y/R/B/O NT_009609AC027562536023731          
S/G/Y/R/B/O NT_009609 - WI-16635    12312.801AC009779, AC009779
S/G/Y/R/B/O NT_009609 - SGC35159    12314.501AC012531, AC012531
S/G/Y/R/B/O NT_009609 - WI-18980    12315.701AC073573, AC021072, AC073573
S/G/Y/R/B/O NT_009609 - WI-8969    12317.201AC023509, AC068889, AC023509, AC068889
S/G/Y/R/B/O NT_009609 - WI-19201    12317.700  
S/G/Y/R/B/O NT_009609 - WI-7746    12318.101AC073573, AC021072, AC073573
S/G/Y/R/B/O NT_009609 - WI-9525    12319.001AC074032, AC074032
S/G/Y/R/B/O NT_009609 - WI-6327    12320.401AC023648, AC087884, AC011600, AC023648, AC087884
S/G/Y/R/B/O NT_009609 - SGC33554    12322.601AB015355, AC008121, AC009727, AC023648, AC087884, AB015355, AC008121, AC009727, AC011600, AC023648, AC087884, AF064482
S/G/Y/R/B/O NT_009609 - WI-11660    12322.802AC068888, AC073573, AC021072, AC024216, AC068888, AC073573, AF332858
S/G/Y/R/B/O NT_009609 - WI-18303    12322.901AC008121, AC009727, AC023648, AC008121, AC009727, AC023648
S/G/Y/R/B/O NT_009609 - WI-12477    12323.001AC008121, AC009727, AC008121, AC009727
S/G/Y/R/B/O NT_009609 - WI-19991    12323.201AC074032, AC074032
S/G/Y/R/B/O NT_009609 - WI-16236    12324.101AC019168, AC067739, AC090998, AP001501, AC019168, AC067739, AC090998, AP001501
S/G/Y/R/B/O NT_009609 - WI-6341    12324.101AB015355, AC008121, AC009727, AC023648, AC087884, AB015355, AC008121, AC009727, AC011600, AC023648, AC087884
S/G/Y/R/B/O NT_009609 - WI-22218    12324.101AC008121, AC009727, AC023648, AC087884, AC008121, AC009727, AC011600, AC023648, AC087884, AF064483
S/G/Y/R/B/O NT_009609 - WI-17598    12324.201AC025154, AC025361, AC067739, AC074032, AP001501, AC025154, AC025361, AC067739, AC074032, AP001501
S/G/Y/R/B/O NT_009609 - SGC35510    12327.801AB015355, AC008121, AC009727, AC023648, AC087884, AB015355, AC008121, AC009727, AC011600, AC023648, AC087884, AF064482
S/G/Y/R/B/O NT_009609 - WI-22480    12327.801AC025154, AC025361, AC074032, AC025154, AC025361, AC074032
S/G/Y/R/B/O NT_009609 - WI-11374    12327.801AC023648, AC087884, AC011600, AC023648, AC087884, AF064478
S/G/Y/R/B/O NT_009609 - IB3071    12327.800  
S/G/Y/R/B/O NT_009609 - SGC32103    12327.802AC025154, AC074032, AC025154, AC074032
S/G/Y/R/B/O NT_009609 - WI-15126    12327.801AC019168, AC067739, AC090998, AP001501, AC019168, AC067739, AC090998, AP001501
S/G/Y/R/B/O NT_009609 - NIB1689    12328.001AC074032, AC074032