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  Chromosome 3 - RH Maps - Single Contig
 

Chromosome 3 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_005927 NT_029265 NT_028123 NT_006044 NT_022517 NT_005507 NT_022516 NT_005564
NT_005762 NT_005646 NT_028139 NT_033044 NT_005502 NT_022539 NT_022464 NT_005580
NT_033049 NT_005498 NT_006036 NT_005825 NT_029949 NT_005991 NT_005585 NT_022567
NT_028129 NT_005990 NT_030623 NT_022439 NT_006014 NT_033032 NT_005986 NT_033015
NT_033038 NT_022552 NT_005787 NT_033040 NT_022481 NT_005607 NT_033026 NT_005999
NT_005531 NT_022473 NT_022423 NT_005510 NT_022510 NT_022665 NT_028127 NT_022400
NT_005530 NT_029258 NT_022442 NT_005769 NT_005526 NT_022540 NT_022717 NT_005644
NT_022446 NT_005583 NT_033034 NT_005882 NT_033036 NT_022419 NT_006031 NT_022551
NT_022459 NT_033029 NT_022713 NT_022460 NT_033011 NT_022554 NT_022720 NT_005684
NT_005663 NT_033018 NT_022420 NT_033043 NT_022642 NT_005791 NT_022452 NT_022435
NT_033028 NT_022497 NT_022625 NT_005568 NT_022401 NT_033031 NT_026983 NT_022475
NT_033037 NT_022451 NT_005509 NT_005527 NT_033050 NT_030634 NT_033041 NT_005863
NT_022454 NT_022607 NT_022453 NT_025670 NT_030622 NT_033045 NT_022728 NT_031768
NT_019350 NT_022434 NT_029256 NT_022405 NT_022569 NT_006042 NT_022484 NT_005795
NT_015150 NT_022445 NT_030625 NT_005532 NT_029269 NT_022455 NT_029931 NT_033022
NT_029257 NT_005513 NT_005994 NT_030635 NT_022411 NT_005824 NT_033021 NT_005543
NT_005588 NT_006029 NT_022513 NT_005523 NT_033014 NT_006025 NT_022404 NT_005823
NT_033019 NT_022393 NT_025663 NT_005567 NT_030630 NT_005969 NT_033051 NT_025664
NT_005655 NT_022503 NT_022632 NT_033024 NT_022416 NT_022432 NT_033020 NT_033035
NT_033042 NT_005832 NT_022502 NT_005772 NT_019358 NT_005591 NT_005775 NT_022616
NT_005540 NT_029939 NT_005616 NT_005539 NT_022555 NT_005849 NT_005657 NT_005678
NT_005846 NT_005612 NT_033030 NT_022463 NT_022594 NT_022449 NT_022421 NT_005744
NT_022565 NT_022518 NT_005638 NT_022397 NT_022700 NT_022422 NT_025667 NT_033052
NT_022472 NT_033033 NT_022526 NT_022674 NT_022458 NT_022509 NT_005635 NT_033053
NT_005950 NT_022396 NT_005952 NT_022406 NT_022676 NT_029253 NT_030638 NT_005910
NT_022549 NT_033009 NT_005911 NT_005962 NT_031766 NT_005883 NT_005501 NT_005571
NT_033017 NT_033013 NT_029928 NT_033010 NT_005834 NT_005535 NT_033012 NT_033016
NT_022508


  NT_005787
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005787AC068753550279971          
S/G/Y/R/B/O NT_005787AC092057550892403RH1031623176.05    1AC068753, AC068753, AC092057
S/G/Y/R/B/O NT_005787AC092057550892443RH414613174.91    1 AC092057
S/G/Y/R/B/O NT_005787AC092057550926663RH655153158.23    1AC068753, AC068753, AC092057
S/G/Y/R/B/O NT_005787AC092057551114953RH583253175.12    1AC068753, AC068753, AC092057
S/G/Y/R/B/O NT_005787AC092057551114953WI-14834    3216.301AC068753, AC068753, AC092057
S/G/Y/R/B/O NT_005787AC092057551220973RH56363175.53    1AC068753, AC068753, AC092057
S/G/Y/R/B/O NT_005787AC092057551220973D3S1582    3216.501AC068753, AC068753, AC092057
S/G/Y/R/B/O NT_005787AC092057551220973RH30064  32355.00  1AC068753, AC068753, AC092057
S/G/Y/R/B/O NT_005787AC092057551423973RH31687  32359.00  1AC068753, AC068753, AC092057
S/G/Y/R/B/O NT_005787AC079032552430211RH1041413174.91    1AC109584, AC079032, AC109584
S/G/Y/R/B/O NT_005787AC109584552782731          
S/G/Y/R/B/O NT_005787AC092797553814473RH31686  32367.00  1AC079032, AC079032
S/G/Y/R/B/O NT_005787AC104298555647293RH587183189.96    1AC092059, AC021252, AC092059, AC104298
S/G/Y/R/B/O NT_005787AC104298555647293WI-21592    3233.201AC092059, AC021252, AC092059, AC104298
S/G/Y/R/B/O NT_005787AC104298555647743RH673253187.48    1 AC093417, AC104298
S/G/Y/R/B/O NT_005787AC092059556065301RH655893189.80    1 AC018594, AC021252, AC092059, AC093417
S/G/Y/R/B/O NT_005787AC092059556381461RH30811  32383.00  1AC027002, AC018594, AC021252, AC027002, AC092059, AC093417
S/G/Y/R/B/O NT_005787AC016306557097731          
S/G/Y/R/B/O NT_005787AC027002557214411          
S/G/Y/R/B/O NT_005787AC016323557266691          
S/G/Y/R/B/O NT_005787AC068773559772551RH1020043184.53    1AC026326, AC107298, AC026326, AC068773, AC107298
S/G/Y/R/B/O NT_005787AC068773559801031RH653293188.39    1AC011106, AC026326, AC107298, AC011106, AC026326, AC068773, AC107298
S/G/Y/R/B/O NT_005787AC107298559282681RH30809  32397.00  1AC016323, AC068773, AC016323, AC068773, AC107298
S/G/Y/R/B/O NT_005787AC011106558872231          
S/G/Y/R/B/O NT_005787AC026326560197671RH589113184.63    1AC011106, AC068773, AC078978, AC107298, AC011106, AC026326, AC068773, AC078978, AC107298
S/G/Y/R/B/O NT_005787AC026326560197671NIB681    3236.501AC011106, AC068773, AC078978, AC107298, AC011106, AC026326, AC068773, AC078978, AC107298
S/G/Y/R/B/O NT_005787AC026326560197721RH581003189.12    1AC011106, AC068773, AC078978, AC107298, AC011106, AC026326, AC068773, AC078978, AC107298
S/G/Y/R/B/O NT_005787AC026326560197721WI-6658    3218.001AC011106, AC068773, AC078978, AC107298, AC011106, AC026326, AC068773, AC078978, AC107298
S/G/Y/R/B/O NT_005787AC026326560197721RH108743184.63    1AC011106, AC068773, AC078978, AC107298, AC011106, AC026326, AC068773, AC078978, AC107298
S/G/Y/R/B/O NT_005787AC026326560198601RH250943184.63    1AC011106, AC068773, AC078978, AC107298, AC011106, AC026326, AC068773, AC078978, AC107298
S/G/Y/R/B/O NT_005787AC026326560212911RH183863184.63    1AC011106, AC068773, AC078978, AC107298, AC011106, AC026326, AC068773, AC078978, AC107298
S/G/Y/R/B/O NT_005787AC078978560240091          
S/G/Y/R/B/O NT_005787AC025572562036773RH1303  32407.00  1AC078978, AC025572, AC078978, AC097014
S/G/Y/R/B/O NT_005787AC025572562038243RH369293187.90    1AC078978, AC025572, AC078978, AC097014
S/G/Y/R/B/O NT_005787AC025572562558053RH1305  32404.00  1 AC025572
S/G/Y/R/B/O NT_005787AC079624573045001RH414833190.91    1 AC079624, AF191633
S/G/Y/R/B/O NT_005787AC079624573057791RH415553191.54    1 AC079624, AF191633
S/G/Y/R/B/O NT_005787AC079624573059211RH581653198.02  3233.201 AC079624
S/G/Y/R/B/O NT_005787AC079624573060271RH263473198.02    1 AC079624
S/G/Y/R/B/O NT_005787AC069254563160861          
S/G/Y/R/B/O NT_005787AC093928564693131RH30813  32486.00  1 AC093928
S/G/Y/R/B/O NT_005787AC093928564716551RH33478  32486.00  1AC069438, AC069438, AC093928
S/G/Y/R/B/O NT_005787AC093928564716551RH587583198.02  3241.001AC069438, AC069438, AC093928
S/G/Y/R/B/O NT_005787AC093928587976311RH483433191.50    1 AC093928, AF059734
S/G/Y/R/B/O NT_005787AC093928588574761RH990003198.02    1 AC093928
S/G/Y/R/B/O NT_005787AC093928588606301RH582203200.25  3239.901 AC093928
S/G/Y/R/B/O NT_005787AC067759563342481          
S/G/Y/R/B/O NT_005787AC069438563876351          
S/G/Y/R/B/O NT_005787AC092418565224361          


  NT_005787 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005787AC108040566149911RH674793191.12    1AC092418, AC092418, AC108040
S/G/Y/R/B/O NT_005787AC108040566164501RH414863191.12    1AC092418, AC092418, AC108040
S/G/Y/R/B/O NT_005787AC108040566165081RH938503198.02    1AC092418, AC092418, AC108040
S/G/Y/R/B/O NT_005787AC108040566172171RH482903198.02    1AC092418, AC092418, AC108040
S/G/Y/R/B/O NT_005787AC108040566261931RH14039  32491.00  1AC092418, AC114480, AC092418, AC108040, AC114480
S/G/Y/R/B/O NT_005787AC108040566261931RH580063198.02  3228.101AC092418, AC114480, AC092418, AC108040, AC114480
S/G/Y/R/B/O NT_005787AC108040566261931RH699603191.54    1AC092418, AC114480, AC092418, AC108040, AC114480
S/G/Y/R/B/O NT_005787AC108040566262131RH1371  32517.00  1AC092418, AC114480, AC092418, AC108040, AC114480
S/G/Y/R/B/O NT_005787AC108040567474841RH31689  32496.00  1AC092418, AC092418, AC108040
S/G/Y/R/B/O NT_005787AC114480566810811RH585003198.02  3227.701 AC114480
S/G/Y/R/B/O NT_005787AC099558568000471RH927033198.02    1AC114480, AC099558, AC114480
S/G/Y/R/B/O NT_005787AC099777570333811RH582123200.15  3233.301AC069254, AC069254, AC099777
S/G/Y/R/B/O NT_005787AC099777570374131RH456253191.33    1 AC099777
S/G/Y/R/B/O NT_005787AC099777570543081RH479743198.02    1AC069254, AC069254, AC099777
S/G/Y/R/B/O NT_005787AC099777570702051RH989473198.02    1AC069254, AC114399, AC069254, AC099777, AC114399
S/G/Y/R/B/O NT_005787AC099777570702141RH415653191.33    1AC069254, AC114399, AC069254, AC099777, AC114399
S/G/Y/R/B/O NT_005787AC099777570722671RH583343191.2232526.00  1AC069254, AC114399, AC069254, AC099777, AC114399
S/G/Y/R/B/O NT_005787AC099777570722671SGC33276    3233.301AC069254, AC114399, AC069254, AC099777, AC114399
S/G/Y/R/B/O NT_005787AC114399573267841RH455333198.02    2AC013421, AC025259, AC013421, AC025259, AC114399
S/G/Y/R/B/O NT_005787AC114399574051851RH588933191.2932558.00  1AC069254, AC069254, AC114399
S/G/Y/R/B/O NT_005787AC114399574051851SGC34580    3240.001AC069254, AC069254, AC114399
S/G/Y/R/B/O NT_005787AC114399574224411RH33096  32543.00  1AC069254, AC069254
S/G/Y/R/B/O NT_005787AC110008571086631          
S/G/Y/R/B/O NT_005787AC098479571197243RH284613198.02    1AC110008, AC098479, AC110008
S/G/Y/R/B/O NT_005787AC098479571509923RH455223198.02    1AC110008, AC098479, AC110008
S/G/Y/R/B/O NT_005787AC098479571556253RH1029303191.33    1AC110008, AC098479, AC110008
S/G/Y/R/B/O NT_005787AC098479571628603RH364483198.02    1AC110008, AC098479, AC110008
S/G/Y/R/B/O NT_005787AC098479571797143RH456273198.02    1AC110008, AC098479, AC110008
S/G/Y/R/B/O NT_005787AC098479571804063RH803473190.17    1AC110008, AC098479, AC110008
S/G/Y/R/B/O NT_005787AC104302574822273RH584563186.85    1 AC104302
S/G/Y/R/B/O NT_005787AC104302574822273WI-14613    3238.801 AC104302
S/G/Y/R/B/O NT_005787AC104302574902913RH744423184.63    1 AC104302
S/G/Y/R/B/O NT_005787AC105748576913093RH30812  32424.00  1 AC105748
S/G/Y/R/B/O NT_005787AC105748577431193CHLC.GATA87B02    3235.301AC023558, AC023558, AC105748
S/G/Y/R/B/O NT_005787AC023558577934941          
S/G/Y/R/B/O NT_005787AC099775579802723RH426423189.8532457.00  1AC067759, AC105753, AC067759, AC099775, AC105753
S/G/Y/R/B/O NT_005787AC105753579837303          
S/G/Y/R/B/O NT_005787AC098478580011021          
S/G/Y/R/B/O NT_005787AC099781582197281RH103023189.64    1 AC099781
S/G/Y/R/B/O NT_005787AC099781582393381RH583203191.50  3219.301 AC099781
S/G/Y/R/B/O NT_005787AC099781582547981RH588433189.85    1 AC099781
S/G/Y/R/B/O NT_005787AC099781582547981WI-11311    3239.301 AC099781
S/G/Y/R/B/O NT_005787AC099781582816411RH984243189.85    1 AC099781
S/G/Y/R/B/O NT_005787AC099781583305681RH261553191.33    1 AC099781
S/G/Y/R/B/O NT_005787AC099781583923661GCT4B10    3221.101 AC099781
S/G/Y/R/B/O NT_005787AC099559583932283          
S/G/Y/R/B/O NT_005787AC099327585559801          
S/G/Y/R/B/O NT_005787AC092050586740203RH1025483191.50    1AC097358, AC092050, AC097358
S/G/Y/R/B/O NT_005787AC092050586898853RH586763189.85    1AC097358, AC092050, AC097358
S/G/Y/R/B/O NT_005787AC092050586898853TIGR-A003P16    3237.001AC097358, AC092050, AC097358


  NT_005787 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005787AC092050586943433RH940533198.02    1AC097358, AC092050, AC097358
S/G/Y/R/B/O NT_005787AC097358587533491          
S/G/Y/R/B/O NT_005787 - RH100783190.49    1AC104161, AC074017, AC104161
S/G/Y/R/B/O NT_005787 - RH163343191.29    1AC092049, AC063925, AC092049
S/G/Y/R/B/O NT_005787 - RH164463179.28    0AC006255, AC097636, AC115284, AC006255, AC097636, AC115284
S/G/Y/R/B/O NT_005787 - RH164943191.33    0AC069254, AC114399, AC069254, AC114399
S/G/Y/R/B/O NT_005787 - RH167863191.50    1AC092049, AC098569, AC104162, AC092049, AC098569, AC104162
S/G/Y/R/B/O NT_005787 - RH183153191.50    2AC098569, AC104162, AC098569, AC104162, AC112199
S/G/Y/R/B/O NT_005787 - RH264083191.54    1AC098569, AC063925, AC098569, AF032102
S/G/Y/R/B/O NT_005787 - RH586333191.22    1AC022499, AC112516, AC022499, AC112516
S/G/Y/R/B/O NT_005787 - RH668103191.22    1AC092049, AC063925, AC092049
S/G/Y/R/B/O NT_005787 - RH751633181.80    0AC006255, AC097636, AC115284, AC006255, AC097636, AC115284
S/G/Y/R/B/O NT_005787 - RH784273189.96    0  
S/G/Y/R/B/O NT_005787 - RH788853175.07    0  
S/G/Y/R/B/O NT_005787 - RH807903189.12    0AC011106, AC068773, AC107298, AC011106, AC068773, AC107298
S/G/Y/R/B/O NT_005787 - RH940013191.33    0  
S/G/Y/R/B/O NT_005787 - RH988053191.54    0AC099781, AC099781