Chromosome 3 - RH Maps - Single Contig

Chromosome 3 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_005927	NT_029265	NT_028123	NT_006044	NT_022517	NT_005507	NT_022516	NT_005564
NT_005762	NT_005646	NT_028139	NT_033044	NT_005502	NT_022539	NT_022464	NT_005580
NT_033049	NT_005498	NT_006036	NT_005825	NT_029949	NT_005991	NT_005585	NT_022567
NT_028129	NT_005990	NT_030623	NT_022439	NT_006014	NT_033032	NT_005986	NT_033015
NT_033038	NT_022552	NT_005787	NT_033040	NT_022481	NT_005607	NT_033026	NT_005999
NT_005531	NT_022473	NT_022423	NT_005510	NT_022510	NT_022665	NT_028127	NT_022400
NT_005530	NT_029258	NT_022442	NT_005769	NT_005526	NT_022540	NT_022717	NT_005644
NT_022446	NT_005583	NT_033034	NT_005882	NT_033036	NT_022419	NT_006031	NT_022551
NT_022459	NT_033029	NT_022713	NT_022460	NT_033011	NT_022554	NT_022720	NT_005684
NT_005663	NT_033018	NT_022420	NT_033043	NT_022642	NT_005791	NT_022452	NT_022435
NT_033028	NT_022497	NT_022625	NT_005568	NT_022401	NT_033031	NT_026983	NT_022475
NT_033037	NT_022451	NT_005509	NT_005527	NT_033050	NT_030634	NT_033041	NT_005863
NT_022454	NT_022607	NT_022453	NT_025670	NT_030622	NT_033045	NT_022728	NT_031768
NT_019350	NT_022434	NT_029256	NT_022405	NT_022569	NT_006042	NT_022484	NT_005795
NT_015150	NT_022445	NT_030625	NT_005532	NT_029269	NT_022455	NT_029931	NT_033022
NT_029257	NT_005513	NT_005994	NT_030635	NT_022411	NT_005824	NT_033021	NT_005543
NT_005588	NT_006029	NT_022513	NT_005523	NT_033014	NT_006025	NT_022404	NT_005823
NT_033019	NT_022393	NT_025663	NT_005567	NT_030630	NT_005969	NT_033051	NT_025664
NT_005655	NT_022503	NT_022632	NT_033024	NT_022416	NT_022432	NT_033020	NT_033035
NT_033042	NT_005832	NT_022502	NT_005772	NT_019358	NT_005591	NT_005775	NT_022616
NT_005540	NT_029939	NT_005616	NT_005539	NT_022555	NT_005849	NT_005657	NT_005678
NT_005846	NT_005612	NT_033030	NT_022463	NT_022594	NT_022449	NT_022421	NT_005744
NT_022565	NT_022518	NT_005638	NT_022397	NT_022700	NT_022422	NT_025667	NT_033052
NT_022472	NT_033033	NT_022526	NT_022674	NT_022458	NT_022509	NT_005635	NT_033053
NT_005950	NT_022396	NT_005952	NT_022406	NT_022676	NT_029253	NT_030638	NT_005910
NT_022549	NT_033009	NT_005911	NT_005962	NT_031766	NT_005883	NT_005501	NT_005571
NT_033017	NT_033013	NT_029928	NT_033010	NT_005834	NT_005535	NT_033012	NT_033016
NT_022508

NT_005564

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_005564	AC098971	24906832	1	RH41542	3	82.48					1		AC098971
S/G/Y/R/B/O	NT_005564	AC098971	24906884	1	WI-9313					3	96.40	1		AC098971
S/G/Y/R/B/O	NT_005564	AC098971	24906884	1	RH57906	3	85.31					1		AC098971
S/G/Y/R/B/O	NT_005564	AC098971	24907437	1	RH46579	3	84.90					1		AC098971
S/G/Y/R/B/O	NT_005564	AC098971	24909479	1	RH58018	3	84.90			3	90.00	1		AC098971
S/G/Y/R/B/O	NT_005564	AC098971	24909777	1	RH47404	3	118.01					1		AC098971
S/G/Y/R/B/O	NT_005564	AC098971	24926520	1	WI-11207					3	94.50	1		AC098971
S/G/Y/R/B/O	NT_005564	AC098971	25007170	1	WI-5291					3	87.60	1		AC098971
S/G/Y/R/B/O	NT_005564	AC068890	25043128	1
S/G/Y/R/B/O	NT_005564	AC093927	25053459	3	RH71272	3	85.41					1	AC098971,	AC093927, AC098971
S/G/Y/R/B/O	NT_005564	AC093927	25059480	3	RH58372	3	84.90			3	89.80	1	AC098971,	AC093927, AC098971
S/G/Y/R/B/O	NT_005564	AC093927	25092962	3	RH78157	3	84.90					1		AC093927
S/G/Y/R/B/O	NT_005564	AC093927	25095785	3	RH41703	3	82.48					1	AC068890,	AC068890, AC093927
S/G/Y/R/B/O	NT_005564	AC093927	25110007	3	RH45167	3	84.90					1	AC068890,	AC068890, AC093927
S/G/Y/R/B/O	NT_005564	AC099054	25242857	1	WI-18322					3	97.00	1		AC099054
S/G/Y/R/B/O	NT_005564	AC099054	25242857	1	RH58766	3	85.10					1		AC099054
S/G/Y/R/B/O	NT_005564	AC112217	25278396	1
S/G/Y/R/B/O	NT_005564	AC012087	25354450	3	WI-18243					3	94.60	1	AC112217,	AC012087, AC112217
S/G/Y/R/B/O	NT_005564	AC012087	25354450	3	RH58501	3	85.41					1	AC112217,	AC012087, AC112217
S/G/Y/R/B/O	NT_005564	AC012087	25365894	3	SGC34912					3	82.30	1	AC112217,	AC012087, AC112217
S/G/Y/R/B/O	NT_005564	AC012087	25365894	3	RH58559	3	118.01					1	AC112217,	AC012087, AC112217
S/G/Y/R/B/O	NT_005564	AC012087	25365940	3	RH16276	3	82.38					1	AC112217,	AC012087, AC112217
S/G/Y/R/B/O	NT_005564	AC012087	25401920	3	FB21H8					3	87.60	1		AC012087
S/G/Y/R/B/O	NT_005564	AC012087	25401920	3	RH58499	3	84.97					1		AC012087
S/G/Y/R/B/O	NT_005564	AC012087	25421706	3	RH5429	3	84.30			3	83.90	1		AC012087
S/G/Y/R/B/O	NT_005564	AC012087	25421879	3	RH452			3	901.00			1		AC012087
S/G/Y/R/B/O	NT_005564	AC093574	25586595	3	WI-4877					3	92.00	1	AC103585,	AC093574, AC103585
S/G/Y/R/B/O	NT_005564	AC103585	25588261	1
S/G/Y/R/B/O	NT_005564		-		RH93712	3	84.90					0
S/G/Y/R/B/O	NT_005564		-		RP_L15_1					3	85.80	1	AL355137,	AB061823, AL355137
S/G/Y/R/B/O	NT_005564		-		SGC31578					3	87.60	1	AC074287, AC093416,	AC074287, AC093416, AF087160
S/G/Y/R/B/O	NT_005564		-		WI-20503					3	88.20	1	AC099754, AC114877,	AC099754, AC114877
S/G/Y/R/B/O	NT_005564		-		WI-20537					3	89.80	1	AC074287, AC093416,	AC074287, AC093416
S/G/Y/R/B/O	NT_005564		-		D3S1583					3	89.80	1	AC074287,	AC074287
S/G/Y/R/B/O	NT_005564		-		WI-6785					3	93.80	1	AC012089, AC104183,	AC012089, AC026674, AC104183
S/G/Y/R/B/O	NT_005564		-		WI-14055					3	93.80	1	AC012089, AC104183,	AC012089, AC026674, AC104183
S/G/Y/R/B/O	NT_005564		-		WI-6465					3	93.90	1	AC063935,	AC063935
S/G/Y/R/B/O	NT_005564		-		FB11F6					3	94.10	1	AC012089, AC104183,	AC012089, AC026674, AC104183
S/G/Y/R/B/O	NT_005564		-		WI-21102					3	94.20	1	AC009429, AC012089, AC104183,	AC009429, AC012089, AC021057, AC022049, AC026674, AC104183
S/G/Y/R/B/O	NT_005564		-		SGC31848					3	94.60	1	AC012089, AC104183,	AC012089, AC026674, AC104183
S/G/Y/R/B/O	NT_005564		-		WI-16381					3	95.20	1	AC079840,	AC079840