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  Chromosome 3 - RH Maps - Single Contig
 

Chromosome 3 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_005927 NT_029265 NT_028123 NT_006044 NT_022517 NT_005507 NT_022516 NT_005564
NT_005762 NT_005646 NT_028139 NT_033044 NT_005502 NT_022539 NT_022464 NT_005580
NT_033049 NT_005498 NT_006036 NT_005825 NT_029949 NT_005991 NT_005585 NT_022567
NT_028129 NT_005990 NT_030623 NT_022439 NT_006014 NT_033032 NT_005986 NT_033015
NT_033038 NT_022552 NT_005787 NT_033040 NT_022481 NT_005607 NT_033026 NT_005999
NT_005531 NT_022473 NT_022423 NT_005510 NT_022510 NT_022665 NT_028127 NT_022400
NT_005530 NT_029258 NT_022442 NT_005769 NT_005526 NT_022540 NT_022717 NT_005644
NT_022446 NT_005583 NT_033034 NT_005882 NT_033036 NT_022419 NT_006031 NT_022551
NT_022459 NT_033029 NT_022713 NT_022460 NT_033011 NT_022554 NT_022720 NT_005684
NT_005663 NT_033018 NT_022420 NT_033043 NT_022642 NT_005791 NT_022452 NT_022435
NT_033028 NT_022497 NT_022625 NT_005568 NT_022401 NT_033031 NT_026983 NT_022475
NT_033037 NT_022451 NT_005509 NT_005527 NT_033050 NT_030634 NT_033041 NT_005863
NT_022454 NT_022607 NT_022453 NT_025670 NT_030622 NT_033045 NT_022728 NT_031768
NT_019350 NT_022434 NT_029256 NT_022405 NT_022569 NT_006042 NT_022484 NT_005795
NT_015150 NT_022445 NT_030625 NT_005532 NT_029269 NT_022455 NT_029931 NT_033022
NT_029257 NT_005513 NT_005994 NT_030635 NT_022411 NT_005824 NT_033021 NT_005543
NT_005588 NT_006029 NT_022513 NT_005523 NT_033014 NT_006025 NT_022404 NT_005823
NT_033019 NT_022393 NT_025663 NT_005567 NT_030630 NT_005969 NT_033051 NT_025664
NT_005655 NT_022503 NT_022632 NT_033024 NT_022416 NT_022432 NT_033020 NT_033035
NT_033042 NT_005832 NT_022502 NT_005772 NT_019358 NT_005591 NT_005775 NT_022616
NT_005540 NT_029939 NT_005616 NT_005539 NT_022555 NT_005849 NT_005657 NT_005678
NT_005846 NT_005612 NT_033030 NT_022463 NT_022594 NT_022449 NT_022421 NT_005744
NT_022565 NT_022518 NT_005638 NT_022397 NT_022700 NT_022422 NT_025667 NT_033052
NT_022472 NT_033033 NT_022526 NT_022674 NT_022458 NT_022509 NT_005635 NT_033053
NT_005950 NT_022396 NT_005952 NT_022406 NT_022676 NT_029253 NT_030638 NT_005910
NT_022549 NT_033009 NT_005911 NT_005962 NT_031766 NT_005883 NT_005501 NT_005571
NT_033017 NT_033013 NT_029928 NT_033010 NT_005834 NT_005535 NT_033012 NT_033016
NT_022508


  NT_005795
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005795AC0928961164914031RH712163412.11    1AC023645, AC023645, AC092896
S/G/Y/R/B/O NT_005795AC0928961165507321RH416063412.11    1AC023645, AC023645, AC092896
S/G/Y/R/B/O NT_005795AC0928961165706571SGC34819    3517.901AC023645, AC023645, AC092896
S/G/Y/R/B/O NT_005795AC0928961165706571RH580383392.95    1AC023645, AC023645, AC092896
S/G/Y/R/B/O NT_005795AC0928961165706571RH162283411.80    1AC023645, AC023645, AC092896
S/G/Y/R/B/O NT_005795AC0928961166136881RH923573412.11    1AC023645, AC023963, AC023645, AC023963, AC092896
S/G/Y/R/B/O NT_005795AC0930101163750301RH802383403.87    1AC027054, AC027054, AC093010
S/G/Y/R/B/O NT_005795AC0930101163807291RH783659137.71    2AC027054, AL353795, AC004472, AC027054, AC093010, AL353795
S/G/Y/R/B/O NT_005795AC0930101184239521RH580363411.80  3518.801AC027054, AC027054, AC093010
S/G/Y/R/B/O NT_005795AC0930101184923791RH126013412.11    2AC027054, AC068938, AC084188, AC090552, AC027054, AC068938, AC073407, AC084188, AC090552, AC093010
S/G/Y/R/B/O NT_005795AC0270541163851081          
S/G/Y/R/B/O NT_005795AC0236451164441131          
S/G/Y/R/B/O NT_005795AC0239631166342401RH166083392.73    1 AC023963
S/G/Y/R/B/O NT_005795AC0239631166342971RH582483411.80  3518.801 AC023963
S/G/Y/R/B/O NT_005795AC0239631182650741RH14276  35530.00  1 AC023963
S/G/Y/R/B/O NT_005795AC0239631182664841RH579513411.49  3512.801 AC023963
S/G/Y/R/B/O NT_005795AC0239631182665991RH167143412.11    1 AC023963
S/G/Y/R/B/O NT_005795AC0239631182676801RH123383411.59    1 AC023963
S/G/Y/R/B/O NT_005795AC0239631182738241RH30828  35530.00  1 AC023963
S/G/Y/R/B/O NT_005795AC0239631182825991RH936913393.80    1 AC023963
S/G/Y/R/B/O NT_005795AC0792021166477441          
S/G/Y/R/B/O NT_005795AC0689581167656561WI-16375    3495.601AC112487, AC068958, AC112487
S/G/Y/R/B/O NT_005795AC0689581167656561RH582623395.40    1AC112487, AC068958, AC112487
S/G/Y/R/B/O NT_005795AC0689581167740201RH579493402.54  3493.601AC112487, AC068958, AC112487
S/G/Y/R/B/O NT_005795AC0689581167747571RH33753  35409.00  1AC112487, AC068958, AC112487
S/G/Y/R/B/O NT_005795AC0689581167748141RH585193393.21  3469.801AC112487, AC068958, AC112487
S/G/Y/R/B/O NT_005795AC1124871167187281          
S/G/Y/R/B/O NT_005795AC0928941167908353          
S/G/Y/R/B/O NT_005795AC0926921169448833WI-22015    3496.601 AC024709, AC079211, AC092692
S/G/Y/R/B/O NT_005795AC0926921169448833RH583613403.19    1 AC024709, AC079211, AC092692
S/G/Y/R/B/O NT_005795AC0926921169449563RH172003403.87    1 AC024709, AC079211, AC092692
S/G/Y/R/B/O NT_005795AC0483341170091781RH583523403.8735421.00  1 AC024709, AC048334, AC079211
S/G/Y/R/B/O NT_005795AC0483341170091781SGC32960    3495.501 AC024709, AC048334, AC079211
S/G/Y/R/B/O NT_005795AC0483341170092091RH106373403.87    1 AC024709, AC048334, AC079211
S/G/Y/R/B/O NT_005795AC0483341170169571RH804903393.48    1AC079202, AC024709, AC048334, AC079202, AC079211
S/G/Y/R/B/O NT_005795AC0483341170170171RH1028123403.97    1AC079202, AC024709, AC048334, AC079202, AC079211
S/G/Y/R/B/O NT_005795AC0483341170176361RH1973  35434.00  1AC079202, AC024709, AC048334, AC079202, AC079211
S/G/Y/R/B/O NT_005795AC0483341170283131RH654903403.92    1 AC024709, AC048334
S/G/Y/R/B/O NT_005795AC0483341170507191RH415743405.27    1 AC024709, AC048334
S/G/Y/R/B/O NT_005795AC0483341170523631RH266383405.37    1 AC048334
S/G/Y/R/B/O NT_005795AC0695161171912013          
S/G/Y/R/B/O NT_005795AC0928921171949053          
S/G/Y/R/B/O NT_005795AC0740441174148253RH443303406.90    1AC021655, AC024108, AC021655, AC024108, AC026559, AC074044, AC092911
S/G/Y/R/B/O NT_005795AC0740441174148293RH32309  35468.00  1AC021655, AC024108, AC021655, AC024108, AC026559, AC074044, AC092911
S/G/Y/R/B/O NT_005795AC0740441174148293RH593284448.71  4493.401AC021655, AC024108, AC021655, AC024108, AC026559, AC074044, AC092911
S/G/Y/R/B/O NT_005795AC0740441174169123RH365533406.90    1AC024108, AC024108, AC074044
S/G/Y/R/B/O NT_005795AC0740441174172873WI-13462    3506.101AC024108, AC024108, AC074044
S/G/Y/R/B/O NT_005795AC0740441174172873RH581633395.50    1AC024108, AC024108, AC074044
S/G/Y/R/B/O NT_005795AC0740441174176883RH922273405.37    1AC021655, AC024108, AC021655, AC024108, AC074044
S/G/Y/R/B/O NT_005795AC0740441174273723RH460873403.97    1AC021655, AC024108, AC021655, AC024108, AC074044


  NT_005795 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005795AC0740441174282573RH264503406.90    1AC021655, AC024108, AC021655, AC024108, AC074044
S/G/Y/R/B/O NT_005795AC0740441174293423RH109363406.90    1AC021655, AC024108, AC021655, AC024108, AC074044
S/G/Y/R/B/O NT_005795AC0740441174301813RH583813406.8035473.003502.301AC021655, AC024108, AC021655, AC024108, AC074044
S/G/Y/R/B/O NT_005795AC0787851175394663RH31706  35473.00  1AC021655, AC021655, AC027293, AC078785
S/G/Y/R/B/O NT_005795AC0787851175565323RH1038023406.90    1 AC078785
S/G/Y/R/B/O NT_005795AC0263291176996411RH933843405.27    1 AC026329, AC055706
S/G/Y/R/B/O NT_005795AC0263291177024901RH584233405.27  3502.601 AC026329
S/G/Y/R/B/O NT_005795AC0263481177477613WI-1780    3499.801 AC026348, AC055706
S/G/Y/R/B/O NT_005795AC0263481177537583RH480743405.27    1 AC026348
S/G/Y/R/B/O NT_005795AC0263481177657633RH425653406.90    1AC023894, AC023894, AC026348
S/G/Y/R/B/O NT_005795AC0263481177657633RH942  35504.00  1AC023894, AC023894, AC026348
S/G/Y/R/B/O NT_005795AC0238941177671001          
S/G/Y/R/B/O NT_005795AC1121281178462453RH922663406.80    1AC023894, AC021695, AC023894, AC112128
S/G/Y/R/B/O NT_005795AC1121281178550753RH119233405.37    1AC023894, AC021695, AC023894, AC112128
S/G/Y/R/B/O NT_005795AC1121281178562823RH669063406.90    1AC023894, AC021695, AC023894, AC112128
S/G/Y/R/B/O NT_005795AC1121281178570803RH936463405.27    1AC023894, AC021695, AC023894, AC112128
S/G/Y/R/B/O NT_005795AC0557401180610473RH935383410.87    1AC019247, AC108693, AC019247, AC055740, AC108693
S/G/Y/R/B/O NT_005795AC0557401180618863SGC33336    3506.801AC019247, AC108693, AC019247, AC055740, AC108693
S/G/Y/R/B/O NT_005795AC0557401180618863RH583393393.74    1AC019247, AC108693, AC019247, AC055740, AC108693
S/G/Y/R/B/O NT_005795AC0557401180618863RH179353410.87    1AC019247, AC108693, AC019247, AC055740, AC108693
S/G/Y/R/B/O NT_005795AC0557401180619293RH587243410.56  3504.601AC019247, AC108693, AC019247, AC055740, AC108693
S/G/Y/R/B/O NT_005795AC0557401180662653RH257383409.76    1AC019247, AC108693, AC019247, AC055740, AC108693
S/G/Y/R/B/O NT_005795AC0192471181486371RH584653410.35  3508.401AC108693, AC019247, AC108693
S/G/Y/R/B/O NT_005795AC0192471181486381RH103543410.87    1AC108693, AC019247, AC108693
S/G/Y/R/B/O NT_005795AC0192471181496041RH359913410.87    1AC108693, AC019247, AC108693
S/G/Y/R/B/O NT_005795AC0192471181511701RH127793410.45    2AC108693, Z95125, AC019247, AC022184, AC108693, Z95125
S/G/Y/R/B/O NT_005795AC0192471181522121RH1023223410.56    1AC108693, AC019247, AC108693
S/G/Y/R/B/O NT_005795AC0192471181523861RH415643411.49    1AC108693, AC019247, AC108693
S/G/Y/R/B/O NT_005795AC0192471181749651RH586153410.14  3505.601AC011022, AC108693, AC011022, AC019247, AC108693
S/G/Y/R/B/O NT_005795AC1086931181139821          
S/G/Y/R/B/O NT_005795AC0241081181206031          
S/G/Y/R/B/O NT_005795AC0216551181287601          
S/G/Y/R/B/O NT_005795AC0110221182287791RH415153410.87    1AC019247, AC079944, AC108693, AC011022, AC019247, AC079944, AC108693
S/G/Y/R/B/O NT_005795AC0110221183753291RH938603410.87    1AC079944, AC011022, AC079944
S/G/Y/R/B/O NT_005795AC0110221184003291RH670203410.66    1 AC011022
S/G/Y/R/B/O NT_005795AC0110221184019111RH115213410.35    1AC079944, AC011022, AC079944
S/G/Y/R/B/O NT_005795AC0799441182249191          
S/G/Y/R/B/O NT_005795AC0689381182461601          
S/G/Y/R/B/O NT_005795AC0905521184814051RH1302  35544.00  2AC027054, AC068938, AC084188, AC093010, AC027054, AC068938, AC073407, AC084188, AC090552, AC093010
S/G/Y/R/B/O NT_005795AC0905521184824211RH581283410.25  3506.602AC027054, AC068938, AC084188, AC093010, AC027054, AC068938, AC073407, AC084188, AC090552, AC093010
S/G/Y/R/B/O NT_005795AC0905521184858841RH933933412.07    2AC027054, AC068938, AC084188, AC093010, AC027054, AC068938, AC073407, AC084188, AC090552, AC093010
S/G/Y/R/B/O NT_005795AC0905521188015371WI-5842    3520.102AC068938, AC083886, AC084188, AC068938, AC073407, AC083886, AC084188, AC090552
S/G/Y/R/B/O NT_005795AC0905521188033371RH33036  35544.00  1AC083886, AC084188, AC083886, AC084188, AC090552
S/G/Y/R/B/O NT_005795AC0905521188033371RH587653416.08    1AC083886, AC084188, AC083886, AC084188, AC090552
S/G/Y/R/B/O NT_005795AC0905521188033371SGC33976    3528.601AC083886, AC084188, AC083886, AC084188, AC090552
S/G/Y/R/B/O NT_005795AC0905521188034581RH676833415.98    1AC083886, AC084188, AC083886, AC084188, AC090552
S/G/Y/R/B/O NT_005795AC0841881184878981          
S/G/Y/R/B/O NT_005795AC0213761185415541          
S/G/Y/R/B/O NT_005795AC0461361185823781WI-3188    3524.201AC021376, AC021376, AC046136
S/G/Y/R/B/O NT_005795AC0461361186729411RH30065  35570.00  1AC021376, AC021376, AC046136


  NT_005795 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005795AC0690631195113341RH416593416.08    1 AC069063
S/G/Y/R/B/O NT_005795AC0690631195581141AFM224ZD6    2980.402AC069205, AC079308, AC069063, AC069205, AC079308
S/G/Y/R/B/O NT_005795AC0838861188163581          
S/G/Y/R/B/O NT_005795AC0557391188776453RH31707  35544.00  1AC083886, AC083886
S/G/Y/R/B/O NT_005795AC0557391188846633WI-4825    3528.602AC068978, AC083886, AC055739, AC068978, AC083886
S/G/Y/R/B/O NT_005795AC0557391188884543AFM044XB2    3527.802AC068978, AC083886, AC055739, AC068978, AC083886
S/G/Y/R/B/O NT_005795AC0789861190171283RH581173412.94  3520.302AC068978, AC068978
S/G/Y/R/B/O NT_005795AC0789861190653073RH583233416.08    1 AC078986
S/G/Y/R/B/O NT_005795AC0789861190653073SGC34980    3528.601 AC078986
S/G/Y/R/B/O NT_005795AC0789861190653073RH686453416.38    1 AC078986
S/G/Y/R/B/O NT_005795AC0789861191232293RH416443415.98    1 AC078986
S/G/Y/R/B/O NT_005795AC0789861191594923RH30827  35553.00  1 AC078986
S/G/Y/R/B/O NT_005795AC0789861191594923RH494903415.98    1 AC078986
S/G/Y/R/B/O NT_005795AC0695061191691453RH586923416.08    1 AC069506
S/G/Y/R/B/O NT_005795AC0695061191691453WI-11302    3528.501 AC069506
S/G/Y/R/B/O NT_005795AC0695061191839033RH32945  35553.00  1 AC069506
S/G/Y/R/B/O NT_005795AC0695061191839033RH588383417.30    1 AC069506
S/G/Y/R/B/O NT_005795AC0695061191839033SGC33762    3528.601 AC069506
S/G/Y/R/B/O NT_005795AC0695061191839033RH704643416.28    1 AC069506
S/G/Y/R/B/O NT_005795AC0265601192951191          
S/G/Y/R/B/O NT_005795AC0929151194566893D3S1310    3524.201 AC027493, AC092915
S/G/Y/R/B/O NT_005795AC0929151194566893RH33844  35558.00  1 AC027493, AC092915
S/G/Y/R/B/O NT_005795 - RH1028413406.90    0  
S/G/Y/R/B/O NT_005795 - RH1041443410.87    0  
S/G/Y/R/B/O NT_005795 - RH453203412.91    0  
S/G/Y/R/B/O NT_005795 - RH584453406.90  3499.901AC108469, AC108469
S/G/Y/R/B/O NT_005795 - RH662523412.01    0  
S/G/Y/R/B/O NT_005795 - WI-11587    3518.601AC009289, AC012534, AC009289, AC012534, AF000573
S/G/Y/R/B/O NT_005795 - RH764883412.22    0 AC074271
S/G/Y/R/B/O NT_005795 - SGC34688    3519.700  
S/G/Y/R/B/O NT_005795 - CHLC.GATA8D02.431    3519.901AC092691, AC092691