Chromosome 3 - RH Maps - Single Contig

Chromosome 3 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_005927	NT_029265	NT_028123	NT_006044	NT_022517	NT_005507	NT_022516	NT_005564
NT_005762	NT_005646	NT_028139	NT_033044	NT_005502	NT_022539	NT_022464	NT_005580
NT_033049	NT_005498	NT_006036	NT_005825	NT_029949	NT_005991	NT_005585	NT_022567
NT_028129	NT_005990	NT_030623	NT_022439	NT_006014	NT_033032	NT_005986	NT_033015
NT_033038	NT_022552	NT_005787	NT_033040	NT_022481	NT_005607	NT_033026	NT_005999
NT_005531	NT_022473	NT_022423	NT_005510	NT_022510	NT_022665	NT_028127	NT_022400
NT_005530	NT_029258	NT_022442	NT_005769	NT_005526	NT_022540	NT_022717	NT_005644
NT_022446	NT_005583	NT_033034	NT_005882	NT_033036	NT_022419	NT_006031	NT_022551
NT_022459	NT_033029	NT_022713	NT_022460	NT_033011	NT_022554	NT_022720	NT_005684
NT_005663	NT_033018	NT_022420	NT_033043	NT_022642	NT_005791	NT_022452	NT_022435
NT_033028	NT_022497	NT_022625	NT_005568	NT_022401	NT_033031	NT_026983	NT_022475
NT_033037	NT_022451	NT_005509	NT_005527	NT_033050	NT_030634	NT_033041	NT_005863
NT_022454	NT_022607	NT_022453	NT_025670	NT_030622	NT_033045	NT_022728	NT_031768
NT_019350	NT_022434	NT_029256	NT_022405	NT_022569	NT_006042	NT_022484	NT_005795
NT_015150	NT_022445	NT_030625	NT_005532	NT_029269	NT_022455	NT_029931	NT_033022
NT_029257	NT_005513	NT_005994	NT_030635	NT_022411	NT_005824	NT_033021	NT_005543
NT_005588	NT_006029	NT_022513	NT_005523	NT_033014	NT_006025	NT_022404	NT_005823
NT_033019	NT_022393	NT_025663	NT_005567	NT_030630	NT_005969	NT_033051	NT_025664
NT_005655	NT_022503	NT_022632	NT_033024	NT_022416	NT_022432	NT_033020	NT_033035
NT_033042	NT_005832	NT_022502	NT_005772	NT_019358	NT_005591	NT_005775	NT_022616
NT_005540	NT_029939	NT_005616	NT_005539	NT_022555	NT_005849	NT_005657	NT_005678
NT_005846	NT_005612	NT_033030	NT_022463	NT_022594	NT_022449	NT_022421	NT_005744
NT_022565	NT_022518	NT_005638	NT_022397	NT_022700	NT_022422	NT_025667	NT_033052
NT_022472	NT_033033	NT_022526	NT_022674	NT_022458	NT_022509	NT_005635	NT_033053
NT_005950	NT_022396	NT_005952	NT_022406	NT_022676	NT_029253	NT_030638	NT_005910
NT_022549	NT_033009	NT_005911	NT_005962	NT_031766	NT_005883	NT_005501	NT_005571
NT_033017	NT_033013	NT_029928	NT_033010	NT_005834	NT_005535	NT_033012	NT_033016
NT_022508

NT_029257

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_029257	AC024927	123396413	1
S/G/Y/R/B/O	NT_029257	AC092897	123408491	3
S/G/Y/R/B/O	NT_029257	AC063952	123576050	3	RH55938	19	268.71			19	347.10	2	AC018766, AC021163,	AC018766, AC021163, AF354258
S/G/Y/R/B/O	NT_029257	AC063952	123592627	3	RH26606	3	418.72					1	AC024927,	AC024927, AC063952
S/G/Y/R/B/O	NT_029257	AC063952	123592664	3	RH36137	3	418.72					1	AC024927,	AC024927, AC063952
S/G/Y/R/B/O	NT_029257	AC063952	123660395	3	RH45723	3	421.43					1	AC078982,	AC063952, AC078982
S/G/Y/R/B/O	NT_029257	AC063952	123662397	3	RH58344	3	418.82					1	AC068844, AC078982,	AC063952, AC068844, AC078982
S/G/Y/R/B/O	NT_029257	AC063952	123662397	3	TIGR-A002L11					3	535.00	1	AC068844, AC078982,	AC063952, AC068844, AC078982
S/G/Y/R/B/O	NT_029257	AC063952	123663522	3	RH48697	3	418.72					1	AC068844, AC078982,	AC063952, AC068844, AC078982
S/G/Y/R/B/O	NT_029257	AC063952	123664027	3	RH17981	3	418.82					1	AC068844, AC078982,	AC063952, AC068844, AC078982
S/G/Y/R/B/O	NT_029257	AC078787	123916730	1	RH48533	3	421.43					1	AC012534, AC068844, AC078982, AC106725,	AC012534, AC068844, AC078787, AC078982, AC106725
S/G/Y/R/B/O	NT_029257	AC009289	123703861	3	RH48693	3	422.27					1		AC009289
S/G/Y/R/B/O	NT_029257	AC009289	123760022	3	RH58750	3	421.58	3	5869.00			1	AC012534, AC106725,	AC009289, AC012534, AC106725, AF000573
S/G/Y/R/B/O	NT_029257	AC009289	123760022	3	SGC33308					3	528.50	1	AC012534, AC106725,	AC009289, AC012534, AC106725, AF000573
S/G/Y/R/B/O	NT_029257	AC009289	123765227	3	WI-11587					3	518.60	1	AC012534,	AC009289, AC012534, AF000573
S/G/Y/R/B/O	NT_029257	AC009289	123765311	3	RH14315			3	5881.00			1		AF000573
S/G/Y/R/B/O	NT_029257	AC009289	123791493	3	RH32294			3	5869.00			1	AC012534, AC106725,	AC009289, AC012534, AC106725
S/G/Y/R/B/O	NT_029257	AC009289	123791493	3	SGC32031					3	534.30	1	AC012534, AC106725,	AC009289, AC012534, AC106725
S/G/Y/R/B/O	NT_029257	AC009289	123791519	3	RH25648	3	418.72					1	AC012534, AC106725,	AC009289, AC012534, AC106725, AC112488
S/G/Y/R/B/O	NT_029257	AC009289	123792743	3	RH16654	3	421.47					1	AC012534,	AC012534
S/G/Y/R/B/O	NT_029257	AC009289	123795302	3	RH66724	3	421.43					1	AC012534, AC106725,	AC009289, AC012534, AC106725
S/G/Y/R/B/O	NT_029257	AC012534	123838293	1
S/G/Y/R/B/O	NT_029257	AC106725	123843812	1
S/G/Y/R/B/O	NT_029257	AC068844	123845023	1
S/G/Y/R/B/O	NT_029257	AC078982	123847169	1
S/G/Y/R/B/O	NT_029257		-		RH11561	3	422.27					0		AC024907
S/G/Y/R/B/O	NT_029257		-		RH36103	3	421.36					0		AC074271
S/G/Y/R/B/O	NT_029257		-		RH41696	3	422.10					0		AC024907
S/G/Y/R/B/O	NT_029257		-		RH41939	3	421.36					0
S/G/Y/R/B/O	NT_029257		-		RH45807	3	422.27					0		AC074271
S/G/Y/R/B/O	NT_029257		-		RH57953	3	422.00					0		AC024907
S/G/Y/R/B/O	NT_029257		-		RH58586	3	422.00					0		AC027294
S/G/Y/R/B/O	NT_029257		-		RH58689	3	421.68					0		AC024907
S/G/Y/R/B/O	NT_029257		-		RH75377	3	421.58					0	AC092910,	AC023238, AC092910
S/G/Y/R/B/O	NT_029257		-		RH75957	3	422.06					0		AC024907