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  Chromosome 3 - RH Maps - Single Contig
 

Chromosome 3 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_005927 NT_029265 NT_028123 NT_006044 NT_022517 NT_005507 NT_022516 NT_005564
NT_005762 NT_005646 NT_028139 NT_033044 NT_005502 NT_022539 NT_022464 NT_005580
NT_033049 NT_005498 NT_006036 NT_005825 NT_029949 NT_005991 NT_005585 NT_022567
NT_028129 NT_005990 NT_030623 NT_022439 NT_006014 NT_033032 NT_005986 NT_033015
NT_033038 NT_022552 NT_005787 NT_033040 NT_022481 NT_005607 NT_033026 NT_005999
NT_005531 NT_022473 NT_022423 NT_005510 NT_022510 NT_022665 NT_028127 NT_022400
NT_005530 NT_029258 NT_022442 NT_005769 NT_005526 NT_022540 NT_022717 NT_005644
NT_022446 NT_005583 NT_033034 NT_005882 NT_033036 NT_022419 NT_006031 NT_022551
NT_022459 NT_033029 NT_022713 NT_022460 NT_033011 NT_022554 NT_022720 NT_005684
NT_005663 NT_033018 NT_022420 NT_033043 NT_022642 NT_005791 NT_022452 NT_022435
NT_033028 NT_022497 NT_022625 NT_005568 NT_022401 NT_033031 NT_026983 NT_022475
NT_033037 NT_022451 NT_005509 NT_005527 NT_033050 NT_030634 NT_033041 NT_005863
NT_022454 NT_022607 NT_022453 NT_025670 NT_030622 NT_033045 NT_022728 NT_031768
NT_019350 NT_022434 NT_029256 NT_022405 NT_022569 NT_006042 NT_022484 NT_005795
NT_015150 NT_022445 NT_030625 NT_005532 NT_029269 NT_022455 NT_029931 NT_033022
NT_029257 NT_005513 NT_005994 NT_030635 NT_022411 NT_005824 NT_033021 NT_005543
NT_005588 NT_006029 NT_022513 NT_005523 NT_033014 NT_006025 NT_022404 NT_005823
NT_033019 NT_022393 NT_025663 NT_005567 NT_030630 NT_005969 NT_033051 NT_025664
NT_005655 NT_022503 NT_022632 NT_033024 NT_022416 NT_022432 NT_033020 NT_033035
NT_033042 NT_005832 NT_022502 NT_005772 NT_019358 NT_005591 NT_005775 NT_022616
NT_005540 NT_029939 NT_005616 NT_005539 NT_022555 NT_005849 NT_005657 NT_005678
NT_005846 NT_005612 NT_033030 NT_022463 NT_022594 NT_022449 NT_022421 NT_005744
NT_022565 NT_022518 NT_005638 NT_022397 NT_022700 NT_022422 NT_025667 NT_033052
NT_022472 NT_033033 NT_022526 NT_022674 NT_022458 NT_022509 NT_005635 NT_033053
NT_005950 NT_022396 NT_005952 NT_022406 NT_022676 NT_029253 NT_030638 NT_005910
NT_022549 NT_033009 NT_005911 NT_005962 NT_031766 NT_005883 NT_005501 NT_005571
NT_033017 NT_033013 NT_029928 NT_033010 NT_005834 NT_005535 NT_033012 NT_033016
NT_022508


  NT_005543
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005543AC0255711299351973RH102783437.21    1 AC020631, AC023601, AC025571
S/G/Y/R/B/O NT_005543AC0255711299352033RH38132  36057.00  1 AC020631, AC023601, AC025571
S/G/Y/R/B/O NT_005543AC0255711299361833RH251543435.19    1 AC020631, AC023601, AC025571
S/G/Y/R/B/O NT_005543AC0255711299372703RH1023413437.31    1 AC020631, AC023601, AC025571
S/G/Y/R/B/O NT_005543AC0840391299698701RH588873437.5136057.003537.601 AC020631, AC023601, AC084039
S/G/Y/R/B/O NT_005543AC0840391299700421RH358883438.75    1 AC020631, AC023601, AC084039
S/G/Y/R/B/O NT_005543AC0840391299810651RH1039103438.80    1 AC020631, AC023601, AC084039
S/G/Y/R/B/O NT_005543AC0840391300470211RH459943438.65    1AC023165, AC074128, AC023165, AC074128, AC084039
S/G/Y/R/B/O NT_005543AC0840391300596461RH588293432.25  3538.301AC023165, AC074128, AC023165, AC074128, AC084039
S/G/Y/R/B/O NT_005543AC0840391300740001RH1034003438.13    1AC023165, AC074128, AC023165, AC074128, AC084039
S/G/Y/R/B/O NT_005543AC0741281300534792RH587573438.71  3538.601AC023165, AC084039, AC023165, AC074128, AC084039
S/G/Y/R/B/O NT_005543AC0741281300536482RH163173437.41    1AC023165, AC080133, AC084039, AC023165, AC074128, AC080133, AC084039, AC084040
S/G/Y/R/B/O NT_005543AC0741281300557272RH366243438.65    1AC084039, AC074128, AC084039
S/G/Y/R/B/O NT_005543AC0741281300557882RH260413437.51    1AC084039, AC074128, AC084039
S/G/Y/R/B/O NT_005543AC0741281300559192RH582173437.61  3539.701AC084039, AC074128, AC084039
S/G/Y/R/B/O NT_005543AC0741281300559252RH454773438.65    1AC084039, AC074128, AC084039
S/G/Y/R/B/O NT_005543AC0741281300574982RH778513437.51    1AC084039, AC074128, AC084039
S/G/Y/R/B/O NT_005543AC0263421301355571RH584693443.75  3540.101 AC092983
S/G/Y/R/B/O NT_005543AC0263421301537741RH169453442.75    1 AC026342
S/G/Y/R/B/O NT_005543AC0263421301554431RH169573443.76    1 AC026342, AC092983
S/G/Y/R/B/O NT_005543AC0263421301565831RH804093441.13    1 AC026342, AC092983
S/G/Y/R/B/O NT_005543AC0263421301606751RH14701  36122.00  1 AC026342, AC092983
S/G/Y/R/B/O NT_005543AC0263421301692051RH588523439.52    1 AC026342, AC092983
S/G/Y/R/B/O NT_005543AC0263421301692051WI-8456    3564.701 AC026342, AC092983
S/G/Y/R/B/O NT_005543AC0263421302565581RH364923442.85    1AC022336, AC022336, AC026342
S/G/Y/R/B/O NT_005543AC0223361303041163RH581793442.7536135.003540.301AC013494, AC055741, AC013494, AC022336, AC055741
S/G/Y/R/B/O NT_005543AC0223361303044893RH414743442.85    1AC013494, AC055741, AC013494, AC022336, AC055741
S/G/Y/R/B/O NT_005543AC0223361303055543RH267433439.57    1AC013494, AC055741, AC013494, AC022336, AC055741
S/G/Y/R/B/O NT_005543AC0223361303184683RH698863442.95    1AC013494, AC055741, AC013494, AC022336, AC055741
S/G/Y/R/B/O NT_005543AC0223361303207523RH587333442.8536135.003541.401AC013494, AC055741, AC013494, AC022336, AC055741
S/G/Y/R/B/O NT_005543AC0223361303231193RH415313442.95    1AC013494, AC055741, AC013494, AC022336, AC055741
S/G/Y/R/B/O NT_005543AC0223361303234663RH752373439.67    1AC013494, AC055741, AC013494, AC022336, AC055741
S/G/Y/R/B/O NT_005543AC0223361303275373RH479893440.93    1AC055741, AC022336, AC055741
S/G/Y/R/B/O NT_005543AC0223361303429043RH671123444.06    1AC013494, AC026603, AC055741, AC092961, AC013494, AC022336, AC026603, AC055741, AC092961
S/G/Y/R/B/O NT_005543AC0223361303465513RH699553443.76    1AC013494, AC055741, AC112133, AC013494, AC022336, AC055741, AC080008, AC112133
S/G/Y/R/B/O NT_005543AC0223361303468173RH121283442.85    1AC013494, AC026603, AC055741, AC092961, AC112133, AC013494, AC022336, AC026603, AC055741, AC080008, AC092961, AC112133
S/G/Y/R/B/O NT_005543AC0134941303587991          
S/G/Y/R/B/O NT_005543AC0557411303926351RH701533439.92    1AC026603, AC092961, AC026603, AC055741, AC092961
S/G/Y/R/B/O NT_005543AC0557411304177861CHLC.GATA4G01.125    3542.801AC026603, AC092961, AC026603, AC055741, AC092961
S/G/Y/R/B/O NT_005543AC0733571305940621RH125193454.75    1AC023593, AC023593, AC073020, AC073357
S/G/Y/R/B/O NT_005543AC0235931306462843RH115713451.41    1 AC012406, AC023593
S/G/Y/R/B/O NT_005543AC0235931306463113RH14707  36226.003550.601 AC012406, AC023593
S/G/Y/R/B/O NT_005543AC0235931306482613RH662433449.27    1 AC012406, AC023593
S/G/Y/R/B/O NT_005543AC0235931306482863RH8612  36230.00  1 AC012406, AC023593
S/G/Y/R/B/O NT_005543AC0235931306484693RH1817  36233.00  1 AC012406, AC023593
S/G/Y/R/B/O NT_005543AC0235931306489683RH580683449.27    1 AC012406, AC023593
S/G/Y/R/B/O NT_005543AC0235931306489683SGC32737    3561.001 AC012406, AC023593
S/G/Y/R/B/O NT_005543AC0235931306492633RH585673451.41  3551.601 AC012406, AC023593
S/G/Y/R/B/O NT_005543AC0235931306576603RH581763449.27  3553.601 AC012406, AC023593
S/G/Y/R/B/O NT_005543AC0235931306580063RH585513449.48  3553.501 AC012406, AC023593


  NT_005543 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005543AC0235931306754333WI-2049    3553.601 AC012406, AC023593
S/G/Y/R/B/O NT_005543AC0235931306777743RH267143439.06    1 AC012406, AC023593
S/G/Y/R/B/O NT_005543AC0840351307161441RH41725  36226.00  1AC023593, AC012406, AC023593, AC084035
S/G/Y/R/B/O NT_005543AC0840351307161441RH579573448.75    1AC023593, AC012406, AC023593, AC084035
S/G/Y/R/B/O NT_005543AC0840351307161441WI-7884    3561.001AC023593, AC012406, AC023593, AC084035
S/G/Y/R/B/O NT_005543AC0840351307161481RH175363449.16    1AC023593, AC012406, AC023593, AC084035
S/G/Y/R/B/O NT_005543AC0840351307163301RH417003454.75    1AC023593, AC012406, AC023593, AC084035
S/G/Y/R/B/O NT_005543AC0840351307180201RH14432  36233.00  1AC023593, AC012406, AC023593, AC084035
S/G/Y/R/B/O NT_005543AC0840351307180201SGC30693    3552.501AC023593, AC012406, AC023593, AC084035
S/G/Y/R/B/O NT_005543AC0840351307180201RH584673452.72    1AC023593, AC012406, AC023593, AC084035
S/G/Y/R/B/O NT_005543AC0840351321838621RH488523454.75    1 AC012406, AC084035
S/G/Y/R/B/O NT_005543AC0840351321842541RH987673454.65    1 AC012406, AC084035
S/G/Y/R/B/O NT_005543AC0230251307549451          
S/G/Y/R/B/O NT_005543AC0801331308166281          
S/G/Y/R/B/O NT_005543AC1124821309572961          
S/G/Y/R/B/O NT_005543AC0231651310460161          
S/G/Y/R/B/O NT_005543AC0169681311499433RH30832  36240.00  1AC084035, AC016968, AC084035
S/G/Y/R/B/O NT_005543AC0169681311499433RH427143454.75    1AC084035, AC016968, AC084035
S/G/Y/R/B/O NT_005543AC0169681312051273WI-21858    3549.101AC084035, AC016968, AC084035
S/G/Y/R/B/O NT_005543AC0169681312051273RH580503456.97    1AC084035, AC016968, AC084035
S/G/Y/R/B/O NT_005543AC0206341312318653RH31716  36050.00  1AC023165, AC074128, AC084039, AC023165, AC074128, AC084039
S/G/Y/R/B/O NT_005543AC0206341312352883RH698903432.00    1AC023165, AC084039, AC020634, AC023165, AC084039
S/G/Y/R/B/O NT_005543AC0206341312949633RH757343438.40    1AC023165, AC020634, AC023165
S/G/Y/R/B/O NT_005543AC0788081319874381RH929703440.41    1AC068739, AC068739, AC078808
S/G/Y/R/B/O NT_005543AC0788081320037451RH588423438.75  3540.001AC068739, AC068739, AC078808
S/G/Y/R/B/O NT_005543AC0788081320037971RH258983440.41    1AC068739, AC068739, AC078808
S/G/Y/R/B/O NT_005543AC0788081320062031RH31721  36072.00  1 AC078808
S/G/Y/R/B/O NT_005543AC1121331314292881          
S/G/Y/R/B/O NT_005543AC0929611314914851RH14185  36097.00  1AC016530, AC026603, AC112133, AC016530, AC026603, AC080008, AC092961, AC112133
S/G/Y/R/B/O NT_005543AC0266031314534591          
S/G/Y/R/B/O NT_005543AC0165301315148271RH751523439.61    1AC112133, AC016530, AC080008, AC112133
S/G/Y/R/B/O NT_005543AC0692331315686661RH132573442.9536091.00  1AC016530, AC016530, AC069233
S/G/Y/R/B/O NT_005543AC0692331315856391RH1042153441.44    1AC016530, AC016530
S/G/Y/R/B/O NT_005543AC0692331316393511RH756303446.09    1AC016530, AC016530, AC069233
S/G/Y/R/B/O NT_005543AC1121291317029841          
S/G/Y/R/B/O NT_005543AC0163071317101241          
S/G/Y/R/B/O NT_005543AC0788661317689151          
S/G/Y/R/B/O NT_005543AC0682271318227621          
S/G/Y/R/B/O NT_005543AC0687391321696491WI-4185    3539.601 AC068739
S/G/Y/R/B/O NT_005543AC0687391322430111RH1041343446.93    2AC026957, AC092903, AC026957, AC068739, AC092903
S/G/Y/R/B/O NT_005543 - RH1033463446.93    2AC016959, AC090439, AC110873, AF238377, AC016959, AC090439, AC110873, AF238377
S/G/Y/R/B/O NT_005543 - RH30057  36109.00  1AC055752, AC069571, AC055752, AC069571
S/G/Y/R/B/O NT_005543 - RH1033763446.51    1AC080096, AC080096
S/G/Y/R/B/O NT_005543 - RH31719  36129.00  1AC055752, AC055752, AL357119
S/G/Y/R/B/O NT_005543 - RH103693432.56    0  
S/G/Y/R/B/O NT_005543 - RH74648  36054.00  1AC024530, AC048331, AC061705, AC024530, AC048331, AC061705, AC092931
S/G/Y/R/B/O NT_005543 - RH118723437.21    0  
S/G/Y/R/B/O NT_005543 - RH7799  36054.00  1AC078797, AC078797, D32046, L36051, S76771, U17071
S/G/Y/R/B/O NT_005543 - RH120663437.31    1AC025576, AC025576, AC026114, AC055724
S/G/Y/R/B/O NT_005543 - RH132533435.39    0  


  NT_005543 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005543 - RH270053435.59    1AC009896, AC009896
S/G/Y/R/B/O NT_005543 - RH284863439.31    0AC013494, AC022336, AC055741, AC013494, AC022336, AC055741
S/G/Y/R/B/O NT_005543 - RH414983433.05    0  
S/G/Y/R/B/O NT_005543 - RH415343442.75    2AC026618, AC055752, AC067998, AC092893, AC108688, AC019289, AC026618, AC032043, AC055752, AC067998, AC092893, AC108688, AL357119
S/G/Y/R/B/O NT_005543 - RH478153433.05    0  
S/G/Y/R/B/O NT_005543 - RH488583439.88    1AC069571, AF389851, AC069571, AF389851
S/G/Y/R/B/O NT_005543 - RH581413442.85    2AC026618, AC055752, AC092893, AC108688, AC019289, AC026618, AC032043, AC055752, AC092893, AC108688, AL357119
S/G/Y/R/B/O NT_005543 - RH582393445.50    2AC026618, AC092893, AC108688, AC019289, AC026618, AC032043, AC092893, AC108688
S/G/Y/R/B/O NT_005543 - RH584403447.29  3539.101AC080096, AC080096
S/G/Y/R/B/O NT_005543 - RH584623437.21    0  
S/G/Y/R/B/O NT_005543 - D3S1551    3542.801AC055752, AC069571, AC055752, AC069571
S/G/Y/R/B/O NT_005543 - RH586123437.31  3546.000  
S/G/Y/R/B/O NT_005543 - RH675673443.76    1AC069571, AF389851, AC069571, AF389851
S/G/Y/R/B/O NT_005543 - RH747703437.99    1AC022993, AC023598, AC112484, AC022993, AC023598, AC024933, AC112484
S/G/Y/R/B/O NT_005543 - RH754713439.99    1AC069571, AF389851, AC069571, AF389851
S/G/Y/R/B/O NT_005543 - RH787613446.55    1AC080096, AC080096
S/G/Y/R/B/O NT_005543 - RH788873442.75    0AC026342, AC026342, AC092983
S/G/Y/R/B/O NT_005543 - RH914603435.39    0  
S/G/Y/R/B/O NT_005543 - RH915173442.85    0  
S/G/Y/R/B/O NT_005543 - RH930823437.41    0  
S/G/Y/R/B/O NT_005543 - RH934803441.44    0  
S/G/Y/R/B/O NT_005543 - RH936523441.44    2AC026618, AC055752, AC067998, AC092893, AC108688, AC019289, AC026618, AC032043, AC055752, AC067998, AC092893, AC108688, AL357119
S/G/Y/R/B/O NT_005543 - RH942773446.51    2AC016959, AC090439, AC110873, AF238377, AC016959, AC090439, AC110873, AF238377