Chromosome 3 - RH Maps - Single Contig

Chromosome 3 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_005927	NT_029265	NT_028123	NT_006044	NT_022517	NT_005507	NT_022516	NT_005564
NT_005762	NT_005646	NT_028139	NT_033044	NT_005502	NT_022539	NT_022464	NT_005580
NT_033049	NT_005498	NT_006036	NT_005825	NT_029949	NT_005991	NT_005585	NT_022567
NT_028129	NT_005990	NT_030623	NT_022439	NT_006014	NT_033032	NT_005986	NT_033015
NT_033038	NT_022552	NT_005787	NT_033040	NT_022481	NT_005607	NT_033026	NT_005999
NT_005531	NT_022473	NT_022423	NT_005510	NT_022510	NT_022665	NT_028127	NT_022400
NT_005530	NT_029258	NT_022442	NT_005769	NT_005526	NT_022540	NT_022717	NT_005644
NT_022446	NT_005583	NT_033034	NT_005882	NT_033036	NT_022419	NT_006031	NT_022551
NT_022459	NT_033029	NT_022713	NT_022460	NT_033011	NT_022554	NT_022720	NT_005684
NT_005663	NT_033018	NT_022420	NT_033043	NT_022642	NT_005791	NT_022452	NT_022435
NT_033028	NT_022497	NT_022625	NT_005568	NT_022401	NT_033031	NT_026983	NT_022475
NT_033037	NT_022451	NT_005509	NT_005527	NT_033050	NT_030634	NT_033041	NT_005863
NT_022454	NT_022607	NT_022453	NT_025670	NT_030622	NT_033045	NT_022728	NT_031768
NT_019350	NT_022434	NT_029256	NT_022405	NT_022569	NT_006042	NT_022484	NT_005795
NT_015150	NT_022445	NT_030625	NT_005532	NT_029269	NT_022455	NT_029931	NT_033022
NT_029257	NT_005513	NT_005994	NT_030635	NT_022411	NT_005824	NT_033021	NT_005543
NT_005588	NT_006029	NT_022513	NT_005523	NT_033014	NT_006025	NT_022404	NT_005823
NT_033019	NT_022393	NT_025663	NT_005567	NT_030630	NT_005969	NT_033051	NT_025664
NT_005655	NT_022503	NT_022632	NT_033024	NT_022416	NT_022432	NT_033020	NT_033035
NT_033042	NT_005832	NT_022502	NT_005772	NT_019358	NT_005591	NT_005775	NT_022616
NT_005540	NT_029939	NT_005616	NT_005539	NT_022555	NT_005849	NT_005657	NT_005678
NT_005846	NT_005612	NT_033030	NT_022463	NT_022594	NT_022449	NT_022421	NT_005744
NT_022565	NT_022518	NT_005638	NT_022397	NT_022700	NT_022422	NT_025667	NT_033052
NT_022472	NT_033033	NT_022526	NT_022674	NT_022458	NT_022509	NT_005635	NT_033053
NT_005950	NT_022396	NT_005952	NT_022406	NT_022676	NT_029253	NT_030638	NT_005910
NT_022549	NT_033009	NT_005911	NT_005962	NT_031766	NT_005883	NT_005501	NT_005571
NT_033017	NT_033013	NT_029928	NT_033010	NT_005834	NT_005535	NT_033012	NT_033016
NT_022508

NT_006014

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_006014	AC099047	49909183	3
S/G/Y/R/B/O	NT_006014	AC021169	50127467	1	WI-4331					3	207.60	1	AC096920,	AC021169, AC096920
S/G/Y/R/B/O	NT_006014	AC096920	50191923	1	WI-13560					3	207.20	1		AC096920
S/G/Y/R/B/O	NT_006014	AC096920	50191923	1	RH58785	3	160.24					1		AC096920
S/G/Y/R/B/O	NT_006014	AC096920	50192056	1	RH93496	3	162.48					1		AC096920
S/G/Y/R/B/O	NT_006014	AC096920	50193121	1	RH70632	3	162.74					1		AC096920
S/G/Y/R/B/O	NT_006014	Z74618	50199906	3
S/G/Y/R/B/O	NT_006014	Z77852	50234403	3	RH94332	3	161.87					1	AC096920,	AC096920, Z77852
S/G/Y/R/B/O	NT_006014	Z77852	50252164	3	RH58511	3	159.69			3	206.40	1	AC096920,	AC096920, Z77852
S/G/Y/R/B/O	NT_006014	Z74023	50252933	3
S/G/Y/R/B/O	NT_006014	Z74019	50282906	3	RH10391	3	161.14					1	AC096920,	AC096920, Z74019
S/G/Y/R/B/O	NT_006014	Z74019	50283020	3	RH15919	3	160.98					1	AC096920,	AC096920, Z74019
S/G/Y/R/B/O	NT_006014	Z74019	50283046	3	TIGR-A003M37					3	207.90	1	AC096920,	AC096920, Z74019
S/G/Y/R/B/O	NT_006014	Z74019	50283046	3	RH58562	3	162.48					1	AC096920,	AC096920, Z74019
S/G/Y/R/B/O	NT_006014	Z74582	50312026	3
S/G/Y/R/B/O	NT_006014	AL450422	50312126	3
S/G/Y/R/B/O	NT_006014	Z84494	50349918	3
S/G/Y/R/B/O	NT_006014	Z84495	50366764	3
S/G/Y/R/B/O	NT_006014	Z75743	50394691	3
S/G/Y/R/B/O	NT_006014	Z75742	50425985	3	RH80071	3	158.18					1		Z75742
S/G/Y/R/B/O	NT_006014	Z84492	50473029	3	RH47509	3	159.80					1		Z84492
S/G/Y/R/B/O	NT_006014	Z84492	50475593	3	RH26102	3	160.69					1		Z84492
S/G/Y/R/B/O	NT_006014	AC002481	50486145	3	WI-17327					3	205.10	1		AC002481
S/G/Y/R/B/O	NT_006014	AC002481	50486145	3	RH58487	3	161.69					1		AC002481
S/G/Y/R/B/O	NT_006014	AC002481	50487143	3	WI-19554					3	205.20	1		AC002481
S/G/Y/R/B/O	NT_006014	AC002481	50487143	3	RH58596	3	159.80					1		AC002481
S/G/Y/R/B/O	NT_006014	AC002481	50487254	3	RH66312	3	162.09					1		AC002481
S/G/Y/R/B/O	NT_006014	AC002481	50493384	3	RH12450	3	160.35					1		AC002481
S/G/Y/R/B/O	NT_006014	AC002455	50511183	3	RH91681	3	159.91					1		AC002455
S/G/Y/R/B/O	NT_006014	AC002455	50514994	3	RH41575	3	162.74					1		AC002455
S/G/Y/R/B/O	NT_006014	AC002455	50516064	3	WI-6762					3	205.30	1		AC002455
S/G/Y/R/B/O	NT_006014	AC002455	50516158	3	RH10878	3	160.47					1		AC002455
S/G/Y/R/B/O	NT_006014	AC002455	50523051	3	RH76292	3	162.74					1		AC002455
S/G/Y/R/B/O	NT_006014	AC002455	50523079	3	RH41675	3	160.47					1		AC002455
S/G/Y/R/B/O	NT_006014	AC002455	50523080	3	RH75357	3	159.69					1		AC002455
S/G/Y/R/B/O	NT_006014	U73167	50540701	3	RH8087			3	2132.00			1		U73167, U90094
S/G/Y/R/B/O	NT_006014	U73167	50541034	3	RH41673	3	162.48					1		U73167, U90094
S/G/Y/R/B/O	NT_006014	U73167	50541126	3	RH16035	3	162.74					1		U73167, U90094
S/G/Y/R/B/O	NT_006014	U73167	50544337	3	RH12528	3	162.70					1		U73167, U90094
S/G/Y/R/B/O	NT_006014	U73167	50548069	3	RH80851	3	160.47					1		U73167, U90094
S/G/Y/R/B/O	NT_006014	U73167	50553025	3	RH91616	3	162.74					1		U73167, U90094
S/G/Y/R/B/O	NT_006014	U73166	50582601	3	SGC31568					3	204.90	1		U73166
S/G/Y/R/B/O	NT_006014	U73166	50582601	3	RH58034	3	160.35					1		U73166
S/G/Y/R/B/O	NT_006014	U73169	50601198	3	RH17625	3	164.03					1		U73169
S/G/Y/R/B/O	NT_006014	AC002077	50620249	3	RH75323	3	159.80					1		AC002077
S/G/Y/R/B/O	NT_006014	AC002077	50620415	3	RH65839	3	162.74					1		AC002077
S/G/Y/R/B/O	NT_006014	AC002077	50644726	3	RH14695			3	2156.00			1		AC002077, X63749
S/G/Y/R/B/O	NT_006014	AC002077	50644796	3	RH78884	3	160.47					1		AC002077, X63749
S/G/Y/R/B/O	NT_006014	AC000063	50652117	3	SGC31666					3	206.40	1		AC000063
S/G/Y/R/B/O	NT_006014	AC000063	50652117	3	RH58082	3	160.35					1		AC000063

NT_006014 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_006014	AC004693	50683791	3
S/G/Y/R/B/O	NT_006014	U73168	50722223	3	RH58405	3	159.35			3	201.40	1	AC104450,	AC104450, U73168
S/G/Y/R/B/O	NT_006014	U73168	50722354	3	RH77698	3	163.07					1	AC104450,	AC104450, U73168
S/G/Y/R/B/O	NT_006014	U73168	50736211	3	RH41453	3	162.74					1	AC104450,	AC104450, U73168
S/G/Y/R/B/O	NT_006014	U73168	50738706	3	RH75542	3	160.53					1	AC104450,	AC104450, U73168
S/G/Y/R/B/O	NT_006014	AC104450	50846644	1	RH31680			3	2107.00			1		AC104450
S/G/Y/R/B/O	NT_006014	AC004814	50763944	3	WI-18724					3	201.10	1	AC104450,	AC004814, AC104450
S/G/Y/R/B/O	NT_006014	AC004814	50763944	3	RH58590	3	158.90					1	AC104450,	AC004814, AC104450
S/G/Y/R/B/O	NT_006014	AC099330	50990292	1	RH58099	3	159.58			3	200.00	1		AC099330
S/G/Y/R/B/O	NT_006014	AC099330	50990309	1	RH11809	3	159.69					1		AC099330
S/G/Y/R/B/O	NT_006014	AC099330	50990915	1	RH28640	3	159.35					1		AC099330
S/G/Y/R/B/O	NT_006014	AC105935	50932313	1	RH57923	3	159.69			3	203.10	1	AC099330,	AC099330, AC105935
S/G/Y/R/B/O	NT_006014	AC105935	50953898	1	RH70883	3	160.69					1	AC099330,	AC099330, AC105935
S/G/Y/R/B/O	NT_006014	AC105935	50954055	1	RH14159			3	2102.00			1	AC099330,	AC099330, AC105935
S/G/Y/R/B/O	NT_006014		-		RH58193	3	159.58					0
S/G/Y/R/B/O	NT_006014		-		RH58332	3	159.46			3	201.30	0