Chromosome 3 - RH Maps - Single Contig

Chromosome 3 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_005927	NT_029265	NT_028123	NT_006044	NT_022517	NT_005507	NT_022516	NT_005564
NT_005762	NT_005646	NT_028139	NT_033044	NT_005502	NT_022539	NT_022464	NT_005580
NT_033049	NT_005498	NT_006036	NT_005825	NT_029949	NT_005991	NT_005585	NT_022567
NT_028129	NT_005990	NT_030623	NT_022439	NT_006014	NT_033032	NT_005986	NT_033015
NT_033038	NT_022552	NT_005787	NT_033040	NT_022481	NT_005607	NT_033026	NT_005999
NT_005531	NT_022473	NT_022423	NT_005510	NT_022510	NT_022665	NT_028127	NT_022400
NT_005530	NT_029258	NT_022442	NT_005769	NT_005526	NT_022540	NT_022717	NT_005644
NT_022446	NT_005583	NT_033034	NT_005882	NT_033036	NT_022419	NT_006031	NT_022551
NT_022459	NT_033029	NT_022713	NT_022460	NT_033011	NT_022554	NT_022720	NT_005684
NT_005663	NT_033018	NT_022420	NT_033043	NT_022642	NT_005791	NT_022452	NT_022435
NT_033028	NT_022497	NT_022625	NT_005568	NT_022401	NT_033031	NT_026983	NT_022475
NT_033037	NT_022451	NT_005509	NT_005527	NT_033050	NT_030634	NT_033041	NT_005863
NT_022454	NT_022607	NT_022453	NT_025670	NT_030622	NT_033045	NT_022728	NT_031768
NT_019350	NT_022434	NT_029256	NT_022405	NT_022569	NT_006042	NT_022484	NT_005795
NT_015150	NT_022445	NT_030625	NT_005532	NT_029269	NT_022455	NT_029931	NT_033022
NT_029257	NT_005513	NT_005994	NT_030635	NT_022411	NT_005824	NT_033021	NT_005543
NT_005588	NT_006029	NT_022513	NT_005523	NT_033014	NT_006025	NT_022404	NT_005823
NT_033019	NT_022393	NT_025663	NT_005567	NT_030630	NT_005969	NT_033051	NT_025664
NT_005655	NT_022503	NT_022632	NT_033024	NT_022416	NT_022432	NT_033020	NT_033035
NT_033042	NT_005832	NT_022502	NT_005772	NT_019358	NT_005591	NT_005775	NT_022616
NT_005540	NT_029939	NT_005616	NT_005539	NT_022555	NT_005849	NT_005657	NT_005678
NT_005846	NT_005612	NT_033030	NT_022463	NT_022594	NT_022449	NT_022421	NT_005744
NT_022565	NT_022518	NT_005638	NT_022397	NT_022700	NT_022422	NT_025667	NT_033052
NT_022472	NT_033033	NT_022526	NT_022674	NT_022458	NT_022509	NT_005635	NT_033053
NT_005950	NT_022396	NT_005952	NT_022406	NT_022676	NT_029253	NT_030638	NT_005910
NT_022549	NT_033009	NT_005911	NT_005962	NT_031766	NT_005883	NT_005501	NT_005571
NT_033017	NT_033013	NT_029928	NT_033010	NT_005834	NT_005535	NT_033012	NT_033016
NT_022508

NT_005769

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_005769	AC012019	72288596	1	WI-5194					3	259.60	1		AC012019, AC104644
S/G/Y/R/B/O	NT_005769	AC104633	72311159	3
S/G/Y/R/B/O	NT_005769	AC096971	72492164	1
S/G/Y/R/B/O	NT_005769	AC018533	72532945	1
S/G/Y/R/B/O	NT_005769	AC069298	72703441	3	RH102611	3	213.52					1	AC022074, AC069425,	AC022074, AC069298, AC069425
S/G/Y/R/B/O	NT_005769	AC069298	72704809	3	WI-17713					3	249.20	1	AC069425, AC103586,	AC069298, AC069425, AC103586
S/G/Y/R/B/O	NT_005769	AC069298	72704809	3	RH58889	3	215.23					1	AC069425, AC103586,	AC069298, AC069425, AC103586
S/G/Y/R/B/O	NT_005769	AC069298	72705501	3	SGC30239					3	254.80	1	AC022074, AC103586,	AC022074, AC069298, AC103586
S/G/Y/R/B/O	NT_005769	AC069298	72705501	3	RH58581	3	215.03					1	AC022074, AC103586,	AC022074, AC069298, AC103586
S/G/Y/R/B/O	NT_005769	AC069298	72705506	3	RH76428	3	211.81					1	AC022074, AC103586,	AC022074, AC069298, AC103586
S/G/Y/R/B/O	NT_005769	AC069298	72705510	3	RH38199			3	3253.00			1	AC022074, AC103586,	AC022074, AC069298, AC103586
S/G/Y/R/B/O	NT_005769	AC069298	72705602	3	RH12371	3	211.18					1	AC022074, AC103586,	AC022074, AC069298, AC103586
S/G/Y/R/B/O	NT_005769	AC069298	72706412	3	RH102172	3	211.97					1	AC022074, AC069425, AC103586,	AC022074, AC069298, AC069425, AC103586
S/G/Y/R/B/O	NT_005769	AC069298	72707939	3	RH41688	3	211.97					1	AC103586,	AC069298, AC103586
S/G/Y/R/B/O	NT_005769	AC069298	72707963	3	RH76777	3	211.18					1	AC022074, AC069425, AC103586,	AC022074, AC069298, AC069425, AC103586
S/G/Y/R/B/O	NT_005769	AC069432	72752975	1
S/G/Y/R/B/O	NT_005769	AC022074	72912342	1
S/G/Y/R/B/O	NT_005769	AC069425	72916040	1
S/G/Y/R/B/O	NT_005769	AC103586	72952946	1	RH46320	3	215.03					1	AC022074, AC069425,	AC022074, AC069425, AC103586
S/G/Y/R/B/O	NT_005769	AC097632	73066286	3	RH36632	3	214.93					1	AC069204, AC069425,	AC069204, AC069425, AC097632
S/G/Y/R/B/O	NT_005769	AC097632	73066451	3	RH67438	3	214.93					1	AC069204, AC069425,	AC069204, AC069425, AC097632
S/G/Y/R/B/O	NT_005769	AC097632	73068797	3	RH44896	3	213.52					1	AC069204,	AC069204, AC097632
S/G/Y/R/B/O	NT_005769	AC097632	73077467	3	RH41506	3	211.81					1	AC069204, AC069425,	AC069204, AC069425, AC097632
S/G/Y/R/B/O	NT_005769	AC069204	73105879	1	RH94234	3	213.42					1		AC069204
S/G/Y/R/B/O	NT_005769	AC069204	73115273	1	RH14288			3	3247.00			2	AC104442,	AC069204, AC079166, AC104442
S/G/Y/R/B/O	NT_005769	AC104442	73187219	3	RH14288			3	3247.00			2	AC069204,	AC069204, AC079166, AC104442
S/G/Y/R/B/O	NT_005769	AC104442	73218998	3	WI-16779					3	254.80	1	AC069204,	AC069204, AC079166, AC104442
S/G/Y/R/B/O	NT_005769	AC104442	73218998	3	RH58194	3	215.03					1	AC069204,	AC069204, AC079166, AC104442
S/G/Y/R/B/O	NT_005769	AC104442	73256225	3	RH80112	3	215.23					1		AC079166, AC104442
S/G/Y/R/B/O	NT_005769	AC104442	73268051	3	RH58871	3	211.97					1		AC079166, AC104442
S/G/Y/R/B/O	NT_005769	AC104442	73268051	3	WI-16849					3	260.70	1		AC079166, AC104442
S/G/Y/R/B/O	NT_005769	AC104442	73292923	3	WI-11225					3	256.40	1		AC079166, AC104442
S/G/Y/R/B/O	NT_005769	AC104442	73357162	3	RH80682	3	211.56					1	AC104645,	AC104442, AC104645
S/G/Y/R/B/O	NT_005769	AC104645	73424743	1	RH58150	3	213.32			3	258.30	1		AC104645
S/G/Y/R/B/O	NT_005769	AC104645	73480496	1	RH31696			3	3216.00			1	AC097634,	AC097634, AC104645
S/G/Y/R/B/O	NT_005769	AC104645	73501479	1	RH16506	3	211.18					1	AC097634,	AC011326, AC097634, AC104645
S/G/Y/R/B/O	NT_005769	AC104645	73501564	1	RH58083	3	211.81					1	AC097634,	AC011326, AC097634, AC104645
S/G/Y/R/B/O	NT_005769	AC104645	73501564	1	SGC34626					3	259.60	1	AC097634,	AC011326, AC097634, AC104645
S/G/Y/R/B/O	NT_005769	AC068990	73678905	1	RH67120	3	211.81					1	AC016964,	AC016964, AC068990
S/G/Y/R/B/O	NT_005769	AC097634	73516454	3	RH80573	3	211.97					1
S/G/Y/R/B/O	NT_005769	AC097634	73520365	3	RH48136	3	213.42					1		AC011326, AC097634
S/G/Y/R/B/O	NT_005769	AC097634	73525740	3	RH65612	3	215.03					1		AC011326, AC097634
S/G/Y/R/B/O	NT_005769	AC097634	73554031	3	RH47528	3	211.81					1		AC011326, AC097634
S/G/Y/R/B/O	NT_005769	AC097634	73563397	3	WI-17022					3	254.80	1		AC011326, AC097634
S/G/Y/R/B/O	NT_005769	AC097634	73563397	3	RH58395	3	215.03					1		AC011326, AC097634
S/G/Y/R/B/O	NT_005769	AC097634	73571329	3	RH12754	3	213.42					1		AC011326, AC097634
S/G/Y/R/B/O	NT_005769	AC097634	73571382	3	RH25749	3	211.07					1		AC011326, AC097634
S/G/Y/R/B/O	NT_005769	AC097634	73663048	3	WI-21047					3	254.20	1	AC016964, AC068990,	AC011326, AC016964, AC068990, AC097634
S/G/Y/R/B/O	NT_005769	AC097634	73663048	3	RH58531	3	213.42					1	AC016964, AC068990,	AC011326, AC016964, AC068990, AC097634
S/G/Y/R/B/O	NT_005769	AC097634	73664881	3	RH48034	3	214.93					1	AC016964, AC068990,	AC011326, AC016964, AC068990, AC097634

NT_005769 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_005769	AC097634	73666525	3	RH65929	3	213.52			1	AC016964, AC068990,	AC011326, AC016964, AC068990, AC097634
S/G/Y/R/B/O	NT_005769	AC097634	73667848	3	RH27165	3	211.97			1	AC016964, AC068990,	AC011326, AC016964, AC068990, AC097634
S/G/Y/R/B/O	NT_005769	AC016964	73668413	1
S/G/Y/R/B/O	NT_005769	AC096970	73739996	3	RH78406	3	216.95			1	AC016964, AC068990,	AC016964, AC068990, AC096970
S/G/Y/R/B/O	NT_005769	AC096970	73740121	3	TIGR-A005D21			3	253.30	1	AC016964, AC068990,	AC016964, AC068990, AC096970
S/G/Y/R/B/O	NT_005769	AC096970	73740121	3	RH58166	3	214.93			1	AC016964, AC068990,	AC016964, AC068990, AC096970
S/G/Y/R/B/O	NT_005769	AC107623	73993909	1	RH41672	3	211.24			1	AC105265, AC105938,	AC105265, AC105938, AC107623
S/G/Y/R/B/O	NT_005769	AC116352	73898634	1
S/G/Y/R/B/O	NT_005769	AC105938	73998243	1	RH92168	3	211.81			1	AC105265,	AC105265, AC105938
S/G/Y/R/B/O	NT_005769	AC105265	74007880	1
S/G/Y/R/B/O	NT_005769	AC112219	74082612	1	WI-928			3	255.30	1		AC112219
S/G/Y/R/B/O	NT_005769		-		RH75383	3	211.35			1	AC092039,	AC018899, AC092039
S/G/Y/R/B/O	NT_005769		-		SGC30572			3	250.40	0
S/G/Y/R/B/O	NT_005769		-		RH80323	3	211.39			0
S/G/Y/R/B/O	NT_005769		-		CHLC.GATA23A10			3	250.40	1	AC073518,	AC073518
S/G/Y/R/B/O	NT_005769		-		WI-16908			3	253.30	1	AC009798,	AC009798
S/G/Y/R/B/O	NT_005769		-		AFM168YC3			3	254.80	0
S/G/Y/R/B/O	NT_005769		-		WI-7914			3	254.80	1	AC024717, AC099666, AC104449,	AC024717, AC099666, AC104449
S/G/Y/R/B/O	NT_005769		-		WI-10072			3	254.90	2	AC066595,	AC034248, AC066595
S/G/Y/R/B/O	NT_005769		-		WI-13262			3	255.30	0
S/G/Y/R/B/O	NT_005769		-		WI-5453			3	255.30	1	AC073856,	AC073856, AC078979
S/G/Y/R/B/O	NT_005769		-		SGC34465			3	255.30	1	AC016952,	AC016952
S/G/Y/R/B/O	NT_005769		-		WI-14397			3	255.30	1	AC018776,	AC018776