Chromosome 3 - RH Maps - Single Contig

Chromosome 3 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_005927	NT_029265	NT_028123	NT_006044	NT_022517	NT_005507	NT_022516	NT_005564
NT_005762	NT_005646	NT_028139	NT_033044	NT_005502	NT_022539	NT_022464	NT_005580
NT_033049	NT_005498	NT_006036	NT_005825	NT_029949	NT_005991	NT_005585	NT_022567
NT_028129	NT_005990	NT_030623	NT_022439	NT_006014	NT_033032	NT_005986	NT_033015
NT_033038	NT_022552	NT_005787	NT_033040	NT_022481	NT_005607	NT_033026	NT_005999
NT_005531	NT_022473	NT_022423	NT_005510	NT_022510	NT_022665	NT_028127	NT_022400
NT_005530	NT_029258	NT_022442	NT_005769	NT_005526	NT_022540	NT_022717	NT_005644
NT_022446	NT_005583	NT_033034	NT_005882	NT_033036	NT_022419	NT_006031	NT_022551
NT_022459	NT_033029	NT_022713	NT_022460	NT_033011	NT_022554	NT_022720	NT_005684
NT_005663	NT_033018	NT_022420	NT_033043	NT_022642	NT_005791	NT_022452	NT_022435
NT_033028	NT_022497	NT_022625	NT_005568	NT_022401	NT_033031	NT_026983	NT_022475
NT_033037	NT_022451	NT_005509	NT_005527	NT_033050	NT_030634	NT_033041	NT_005863
NT_022454	NT_022607	NT_022453	NT_025670	NT_030622	NT_033045	NT_022728	NT_031768
NT_019350	NT_022434	NT_029256	NT_022405	NT_022569	NT_006042	NT_022484	NT_005795
NT_015150	NT_022445	NT_030625	NT_005532	NT_029269	NT_022455	NT_029931	NT_033022
NT_029257	NT_005513	NT_005994	NT_030635	NT_022411	NT_005824	NT_033021	NT_005543
NT_005588	NT_006029	NT_022513	NT_005523	NT_033014	NT_006025	NT_022404	NT_005823
NT_033019	NT_022393	NT_025663	NT_005567	NT_030630	NT_005969	NT_033051	NT_025664
NT_005655	NT_022503	NT_022632	NT_033024	NT_022416	NT_022432	NT_033020	NT_033035
NT_033042	NT_005832	NT_022502	NT_005772	NT_019358	NT_005591	NT_005775	NT_022616
NT_005540	NT_029939	NT_005616	NT_005539	NT_022555	NT_005849	NT_005657	NT_005678
NT_005846	NT_005612	NT_033030	NT_022463	NT_022594	NT_022449	NT_022421	NT_005744
NT_022565	NT_022518	NT_005638	NT_022397	NT_022700	NT_022422	NT_025667	NT_033052
NT_022472	NT_033033	NT_022526	NT_022674	NT_022458	NT_022509	NT_005635	NT_033053
NT_005950	NT_022396	NT_005952	NT_022406	NT_022676	NT_029253	NT_030638	NT_005910
NT_022549	NT_033009	NT_005911	NT_005962	NT_031766	NT_005883	NT_005501	NT_005571
NT_033017	NT_033013	NT_029928	NT_033010	NT_005834	NT_005535	NT_033012	NT_033016
NT_022508

NT_005526

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_005526	AC098481	74855664	1	WI-3474					3	256.40	2	AC114876,	AC098481, AC114876
S/G/Y/R/B/O	NT_005526	AC098481	74881264	1	RH44670	3	213.21					3	AC109997, AC114876,	AC098481, AC109997, AC114876
S/G/Y/R/B/O	NT_005526	AC103559	74367454	1	RH67614	3	213.21					1	AC023771,	AC023771, AC103559
S/G/Y/R/B/O	NT_005526	AC103559	74368944	1	RH66193	3	214.93					1	AC023771,	AC023771, AC103559
S/G/Y/R/B/O	NT_005526	AC103559	74368950	1	RH41517	3	215.13					1	AC023771,	AC023771, AC103559
S/G/Y/R/B/O	NT_005526	AC103559	74381414	1	RH48480	3	215.13					1	AC023771,	AC023771, AC103559
S/G/Y/R/B/O	NT_005526	AC023771	74387554	1	RH17196	3	213.21					1		AC023771
S/G/Y/R/B/O	NT_005526	AC023771	74387653	1	RH47287	3	213.01					1		AC023771
S/G/Y/R/B/O	NT_005526	AC024152	74456678	1	CHLC.GGAT2G03					3	258.10	1	AC023771,	AC023771, AC024152
S/G/Y/R/B/O	NT_005526	AC103560	74513304	1	TIGR-A002G41					3	256.40	1	AC024102,	AC024102, AC103560
S/G/Y/R/B/O	NT_005526	AC103560	74513304	1	RH58142	3	216.85					1	AC024102,	AC024102, AC103560
S/G/Y/R/B/O	NT_005526	AC103560	74513338	1	RH12030	3	215.03					1	AC024102,	AC024102, AC103560
S/G/Y/R/B/O	NT_005526	AC024102	74536696	1
S/G/Y/R/B/O	NT_005526	AC114876	75075867	1	RH44670	3	213.21					3	AC098481, AC109997,	AC098481, AC109997, AC114876
S/G/Y/R/B/O	NT_005526	AC114876	75101399	1	WI-3474					3	256.40	2	AC098481,	AC098481, AC114876
S/G/Y/R/B/O	NT_005526	AC068222	75120739	1
S/G/Y/R/B/O	NT_005526	AC097369	75184314	1
S/G/Y/R/B/O	NT_005526	AC104435	75270839	1
S/G/Y/R/B/O	NT_005526	AC104330	75500121	1	SGC33951					3	259.60	1	AC069212,	AC069212, AC104330
S/G/Y/R/B/O	NT_005526	AC104330	75500121	1	RH58638	3	211.81					1	AC069212,	AC069212, AC104330
S/G/Y/R/B/O	NT_005526	AC104330	75516582	1	RH37863			3	2250.00			2	AC069212,	AC069212, AC104330
S/G/Y/R/B/O	NT_005526	AC104330	75524225	1	RH16326	3	211.18					2	AC069212,	AC069212, AC104330
S/G/Y/R/B/O	NT_005526	AC104330	75543651	1	RH75629	3	211.18					2	AC069212,	AC069212, AC104330
S/G/Y/R/B/O	NT_005526	AC104330	75544129	1	RH58780	3	213.52			3	256.10	2	AC069212,	AC069212, AC104330
S/G/Y/R/B/O	NT_005526	AC104330	75544425	1	WI-11804					3	259.60	2	AC069212,	AC069212, AC104330
S/G/Y/R/B/O	NT_005526	AC104330	75544425	1	RH58589	3	211.81					2	AC069212,	AC069212, AC104330
S/G/Y/R/B/O	NT_005526	AC104330	75544476	1	RH25524	3	211.07					2	AC069212,	AC069212, AC104330
S/G/Y/R/B/O	NT_005526	AC104330	75545805	1	RH42883			3	2250.00			2	AC069212,	AC069212, AC104330
S/G/Y/R/B/O	NT_005526	AC104330	75546859	1	RH10521	3	211.97					2	AC069212,	AC069212, AC104330
S/G/Y/R/B/O	NT_005526	AC104330	75546861	1	RH10906	3	211.97					2	AC069212,	AC069212, AC104330
S/G/Y/R/B/O	NT_005526	AC104330	75548750	1	RH27216	3	211.70					2	AC069212,	AC069212, AC104330
S/G/Y/R/B/O	NT_005526	AC104330	75549669	1	RH58281	3	212.84			3	256.10	2	AC069212,	AC069212, AC104330
S/G/Y/R/B/O	NT_005526	AC104330	75549725	1	RH58369	3	211.97			3	259.60	2	AC069212,	AC069212, AC104330
S/G/Y/R/B/O	NT_005526	AC104330	75610766	1	RH104204	3	215.03					1	AC069212,	AC069212, AC104330
S/G/Y/R/B/O	NT_005526	AC104330	75628646	1	RH80508	3	211.81					1	AC069212,	AC069212, AC104330
S/G/Y/R/B/O	NT_005526	AC069212	75572001	1	RH37863			3	2250.00			2	AC104330,	AC069212, AC104330
S/G/Y/R/B/O	NT_005526	AC069212	75579644	1	RH16326	3	211.18					2	AC104330,	AC069212, AC104330
S/G/Y/R/B/O	NT_005526	AC069212	75599070	1	RH75629	3	211.18					2	AC104330,	AC069212, AC104330
S/G/Y/R/B/O	NT_005526	AC069212	75599548	1	RH58780	3	213.52			3	256.10	2	AC104330,	AC069212, AC104330
S/G/Y/R/B/O	NT_005526	AC069212	75599844	1	WI-11804					3	259.60	2	AC104330,	AC069212, AC104330
S/G/Y/R/B/O	NT_005526	AC069212	75599844	1	RH58589	3	211.81					2	AC104330,	AC069212, AC104330
S/G/Y/R/B/O	NT_005526	AC069212	75599895	1	RH25524	3	211.07					2	AC104330,	AC069212, AC104330
S/G/Y/R/B/O	NT_005526	AC069212	75601225	1	RH42883			3	2250.00			2	AC104330,	AC069212, AC104330
S/G/Y/R/B/O	NT_005526	AC069212	75602279	1	RH10521	3	211.97					2	AC104330,	AC069212, AC104330
S/G/Y/R/B/O	NT_005526	AC069212	75602281	1	RH10906	3	211.97					2	AC104330,	AC069212, AC104330
S/G/Y/R/B/O	NT_005526	AC069212	75604170	1	RH27216	3	211.70					2	AC104330,	AC069212, AC104330
S/G/Y/R/B/O	NT_005526	AC069212	75605089	1	RH58281	3	212.84			3	256.10	2	AC104330,	AC069212, AC104330
S/G/Y/R/B/O	NT_005526	AC069212	75605145	1	RH58369	3	211.97			3	259.60	2	AC104330,	AC069212, AC104330
S/G/Y/R/B/O	NT_005526	AC069212	75641541	1	RH57930	3	214.83					1	AC104330,	AC069212, AC104330
S/G/Y/R/B/O	NT_005526	AC069212	75641541	1	FB10E5					3	252.60	1	AC104330,	AC069212, AC104330

NT_005526 (cont)

Links	Contig	Chr Start	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_005526	-	RH101963	3	212.91					0
S/G/Y/R/B/O	NT_005526	-	RH30819			3	3543.00			0
S/G/Y/R/B/O	NT_005526	-	WI-9728					3	255.60	2	AC066595,	AC034248, AC066595
S/G/Y/R/B/O	NT_005526	-	RH103635	3	215.23					1	AC016945,	AC016945
S/G/Y/R/B/O	NT_005526	-	WI-10340					3	255.60	0
S/G/Y/R/B/O	NT_005526	-	RH103942	3	213.21					0
S/G/Y/R/B/O	NT_005526	-	SGC33714					3	256.20	1	AC092060,	AC012521, AC092060
S/G/Y/R/B/O	NT_005526	-	RH12055	3	213.21					0
S/G/Y/R/B/O	NT_005526	-	WI-11200					3	256.30	1	AC021866, AC024256, AC055114,	AC021866, AC024256, AC055114
S/G/Y/R/B/O	NT_005526	-	RH16465	3	215.03					0
S/G/Y/R/B/O	NT_005526	-	RH18479	3	215.03					0
S/G/Y/R/B/O	NT_005526	-	RH58254	3	213.21			3	256.40	0
S/G/Y/R/B/O	NT_005526	-	RH36258	3	213.01					0
S/G/Y/R/B/O	NT_005526	-	RH36693	3	212.60					0
S/G/Y/R/B/O	NT_005526	-	RH41452	3	213.62					0	AC098479, AC110008,	AC098479, AC110008
S/G/Y/R/B/O	NT_005526	-	RH58409	3	214.93					0
S/G/Y/R/B/O	NT_005526	-	RH58515	3	215.13					1	AC009798,	AC009798
S/G/Y/R/B/O	NT_005526	-	RH58587	3	215.03			3	258.20	0
S/G/Y/R/B/O	NT_005526	-	RH58819	3	215.03					0
S/G/Y/R/B/O	NT_005526	-	WI-4645					3	258.20	1	AC013625, AC016930,	AC013625, AC016930
S/G/Y/R/B/O	NT_005526	-	RH58864	3	213.32			3	258.20	0
S/G/Y/R/B/O	NT_005526	-	RH77689	3	215.03					0
S/G/Y/R/B/O	NT_005526	-	D3S1566					3	258.30	1	AC105266,	AC105266
S/G/Y/R/B/O	NT_005526	-	RH78588	3	215.13					0
S/G/Y/R/B/O	NT_005526	-	WI-16547					3	258.40	1	AC092060, AC109587,	AC012521, AC067985, AC092060, AC109587
S/G/Y/R/B/O	NT_005526	-	RH80253	3	212.81					0	AC016964, AC097634,	AC011326, AC016964, AC097634
S/G/Y/R/B/O	NT_005526	-	RH80601	3	215.13					0	AC069298, AC069425, AC103586,	AC069298, AC069425, AC103586