Chromosome 3 - RH Maps - Single Contig

Chromosome 3 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_005927	NT_029265	NT_028123	NT_006044	NT_022517	NT_005507	NT_022516	NT_005564
NT_005762	NT_005646	NT_028139	NT_033044	NT_005502	NT_022539	NT_022464	NT_005580
NT_033049	NT_005498	NT_006036	NT_005825	NT_029949	NT_005991	NT_005585	NT_022567
NT_028129	NT_005990	NT_030623	NT_022439	NT_006014	NT_033032	NT_005986	NT_033015
NT_033038	NT_022552	NT_005787	NT_033040	NT_022481	NT_005607	NT_033026	NT_005999
NT_005531	NT_022473	NT_022423	NT_005510	NT_022510	NT_022665	NT_028127	NT_022400
NT_005530	NT_029258	NT_022442	NT_005769	NT_005526	NT_022540	NT_022717	NT_005644
NT_022446	NT_005583	NT_033034	NT_005882	NT_033036	NT_022419	NT_006031	NT_022551
NT_022459	NT_033029	NT_022713	NT_022460	NT_033011	NT_022554	NT_022720	NT_005684
NT_005663	NT_033018	NT_022420	NT_033043	NT_022642	NT_005791	NT_022452	NT_022435
NT_033028	NT_022497	NT_022625	NT_005568	NT_022401	NT_033031	NT_026983	NT_022475
NT_033037	NT_022451	NT_005509	NT_005527	NT_033050	NT_030634	NT_033041	NT_005863
NT_022454	NT_022607	NT_022453	NT_025670	NT_030622	NT_033045	NT_022728	NT_031768
NT_019350	NT_022434	NT_029256	NT_022405	NT_022569	NT_006042	NT_022484	NT_005795
NT_015150	NT_022445	NT_030625	NT_005532	NT_029269	NT_022455	NT_029931	NT_033022
NT_029257	NT_005513	NT_005994	NT_030635	NT_022411	NT_005824	NT_033021	NT_005543
NT_005588	NT_006029	NT_022513	NT_005523	NT_033014	NT_006025	NT_022404	NT_005823
NT_033019	NT_022393	NT_025663	NT_005567	NT_030630	NT_005969	NT_033051	NT_025664
NT_005655	NT_022503	NT_022632	NT_033024	NT_022416	NT_022432	NT_033020	NT_033035
NT_033042	NT_005832	NT_022502	NT_005772	NT_019358	NT_005591	NT_005775	NT_022616
NT_005540	NT_029939	NT_005616	NT_005539	NT_022555	NT_005849	NT_005657	NT_005678
NT_005846	NT_005612	NT_033030	NT_022463	NT_022594	NT_022449	NT_022421	NT_005744
NT_022565	NT_022518	NT_005638	NT_022397	NT_022700	NT_022422	NT_025667	NT_033052
NT_022472	NT_033033	NT_022526	NT_022674	NT_022458	NT_022509	NT_005635	NT_033053
NT_005950	NT_022396	NT_005952	NT_022406	NT_022676	NT_029253	NT_030638	NT_005910
NT_022549	NT_033009	NT_005911	NT_005962	NT_031766	NT_005883	NT_005501	NT_005571
NT_033017	NT_033013	NT_029928	NT_033010	NT_005834	NT_005535	NT_033012	NT_033016
NT_022508

NT_005580

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_005580	AC105749	36135649	1
S/G/Y/R/B/O	NT_005580	AC097360	36174877	3	RH58738	3	127.31			3	138.90	1	AC068979, AC105749,	AC068979, AC097360, AC105749
S/G/Y/R/B/O	NT_005580	AC097360	36174957	3	RH28687	3	120.62					1	AC068979, AC105749,	AC068979, AC097360, AC105749
S/G/Y/R/B/O	NT_005580	AC097360	36176488	3	RH27082	3	126.69					1	AC068979, AC105749,	AC068979, AC097360, AC105749
S/G/Y/R/B/O	NT_005580	AC097360	36293987	3	RH75614	3	129.12					1	AC105749,	AC097360, AC105749
S/G/Y/R/B/O	NT_005580	AC011816	36448472	3	RH78369	3	125.67					1	AC006583,	AC006583, AC011816
S/G/Y/R/B/O	NT_005580	AC011816	36450376	3	RH58628	3	127.31			3	137.30	1	AC006583,	AC006583, AC011816
S/G/Y/R/B/O	NT_005580	AC011816	36451518	3	RH38226			3	1468.00			1	AC006583,	AC006583
S/G/Y/R/B/O	NT_005580	AC011816	36451765	3	RH91326	3	128.92					1	AC006583,	AC006583, AC011816
S/G/Y/R/B/O	NT_005580	AC011816	36451811	3	RH58700	3	121.24					1	AC006583,	AC006583, AC011816
S/G/Y/R/B/O	NT_005580	AC011816	36451811	3	WI-22303					3	125.60	1	AC006583,	AC006583, AC011816
S/G/Y/R/B/O	NT_005580	AC006583	36489500	1	RH15466	3	131.24			3	140.50	1		AC006583
S/G/Y/R/B/O	NT_005580	AC006583	36513165	1	RH13987			3	1473.00			1		AC006583
S/G/Y/R/B/O	NT_005580	AC006583	36515517	1	RH58668	3	128.92			3	140.50	1		AC006583
S/G/Y/R/B/O	NT_005580	AC006583	36515597	1	RH66486	3	128.92					1		AC006583
S/G/Y/R/B/O	NT_005580	AC006583	36577564	1	RH41687	3	125.67					1	AL450991,	AC006583, AL450991
S/G/Y/R/B/O	NT_005580	AL450991	36538721	1	RH41623	3	121.68					1	AC058799,	AC058799, AL450991
S/G/Y/R/B/O	NT_005580	AL450991	36538732	1	RH66477	3	125.06					1	AC058799,	AC058799, AL450991
S/G/Y/R/B/O	NT_005580	AL450991	36611069	1	RH8889			3	1572.00			1	AC058799,	AC058799, AL450991
S/G/Y/R/B/O	NT_005580	AC058799	36635594	1	RH16680	3	120.62					1	AL450991,	AC058799, AL450991
S/G/Y/R/B/O	NT_005580	AC097359	36645670	1	RH93672	3	125.67					1	AC058799, AL450991,	AC058799, AC097359, AL450991
S/G/Y/R/B/O	NT_005580	AC097359	36709397	1	RH74823	3	128.92					1	AL450991,	AL450991
S/G/Y/R/B/O	NT_005580	AC068979	36765821	1
S/G/Y/R/B/O	NT_005580	AC098648	36830405	3	WI-5491					3	135.70	1	AC068979,	AC068979, AC098648
S/G/Y/R/B/O	NT_005580	AC098648	36890072	3	RH68311	3	121.90					1	AC068979,	AC068979, AC098648
S/G/Y/R/B/O	NT_005580	AC092051	36918187	3	WI-10459					3	138.80	1	AC098648,	AC092051, AC098648
S/G/Y/R/B/O	NT_005580	AC092051	36994538	3	RH15259	3	129.02			3	138.80	1		AC092051
S/G/Y/R/B/O	NT_005580	AC092051	36994538	3	RH30059			3	8285.00			1		AC092051
S/G/Y/R/B/O	NT_005580	AC022292	37086725	1
S/G/Y/R/B/O	NT_005580	AC105901	37192680	3
S/G/Y/R/B/O	NT_005580	AC018855	37338576	1
S/G/Y/R/B/O	NT_005580	AC024097	37429803	1
S/G/Y/R/B/O	NT_005580	AP000493	37434505	3	RH66759	3	126.08					1		AP000493
S/G/Y/R/B/O	NT_005580	AP000493	37475181	3	RH58781	3	128.92			3	140.50	1	AC097359,	AC097359, AP000493
S/G/Y/R/B/O	NT_005580	AP000493	37475237	3	RH66927	3	125.67					1	AC097359,	AC097359, AP000493
S/G/Y/R/B/O	NT_005580	AP000493	37510610	3	RH31669			3	1488.00			1		AC092055, AP000493
S/G/Y/R/B/O	NT_005580	AP000493	37523878	3	RH25191	3	128.92					1		AC009813, AC092055, AP000493
S/G/Y/R/B/O	NT_005580	AP000493	37525079	3	RH10301	3	126.59					1		AC009813, AC092055, AP000493
S/G/Y/R/B/O	NT_005580	AP000493	37525090	3	RH58101	3	131.24			3	134.00	1		AC009813, AC092055, AP000493
S/G/Y/R/B/O	NT_005580	AP000493	37552456	3	WI-3347					3	140.50	1		AC009813, AC092055, AP000493
S/G/Y/R/B/O	NT_005580	AP000494	37746528	3	RH67095	3	125.67					1		AP000494
S/G/Y/R/B/O	NT_005580	AP000494	37746535	3	RH16569	3	125.67					1		AP000494
S/G/Y/R/B/O	NT_005580	AP000495	37842234	3	RH45515	3	125.65					1		AP000495
S/G/Y/R/B/O	NT_005580	AP000495	37873273	3	RH47614	3	126.50					1		AC093415, AP000495
S/G/Y/R/B/O	NT_005580	AP000495	37927912	3	RH1720			3	1514.00			1		AC093415, AP000495
S/G/Y/R/B/O	NT_005580	AP000495	37930733	3	RH18292	3	131.24					1		AC093415, AP000495
S/G/Y/R/B/O	NT_005580	AP000495	37932090	3	RH58763	3	124.93			3	140.50	1		AC093415, AP000495
S/G/Y/R/B/O	NT_005580	AP000495	37932100	3	RH10674	3	131.24					1		AC093415, AP000495
S/G/Y/R/B/O	NT_005580	AP000495	37932154	3	RH98242	3	131.24					1		AC093415, AP000495
S/G/Y/R/B/O	NT_005580	AP000496	37989569	3	RH58502	3	131.96	3	1514.00	3	141.70	1		AC105752, AP000496

NT_005580 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_005580	AP000496	37989621	3	RH67628	3	133.30					1		AC093415, AC105752
S/G/Y/R/B/O	NT_005580	AP000496	37989651	3	RH44586	3	132.79					1		AC093415, AC105752, AP000496
S/G/Y/R/B/O	NT_005580	AP000497	38045094	3	RH37902			3	1503.00			1		AC105752, AP000497
S/G/Y/R/B/O	NT_005580	AP000497	38071819	3	RH33030			3	1514.00			1		AC105752, AP000497
S/G/Y/R/B/O	NT_005580	AP000497	38071960	3	RH16286	3	135.41					1		AC105752, AP000497
S/G/Y/R/B/O	NT_005580	AP000497	38072048	3	RH67656	3	135.41					1		AC105752, AP000497
S/G/Y/R/B/O	NT_005580	AP000497	38089682	3	RH8888			3	1528.00			1		AC105752, AP000497
S/G/Y/R/B/O	NT_005580	AP000497	38091010	3	RH80331	3	135.41					1		AC105752, AP000497
S/G/Y/R/B/O	NT_005580	AP000497	38092889	3	RH7935			3	1521.00			1		AC105752, AP000497
S/G/Y/R/B/O	NT_005580	AP000497	38115792	3	RH48720	3	132.37					1		AP000497
S/G/Y/R/B/O	NT_005580	AP000497	38116024	3	RH38644			3	1551.00			1		AP000497
S/G/Y/R/B/O	NT_005580	AP000497	38116273	3	RH70548	3	135.41					1		AP000497
S/G/Y/R/B/O	NT_005580	AB026898	38218377	3	RH58167	3	124.12					1	AC026346,	AB026898, AC026346, AC093116, AC099534, AP000498
S/G/Y/R/B/O	NT_005580	AB026898	38218377	3	WI-19140					3	144.50	1	AC026346,	AB026898, AC026346, AC093116, AC099534, AP000498
S/G/Y/R/B/O	NT_005580	AB026898	38218377	3	RH8074			3	1538.00			1	AC026346,	AB026898, AC026346, AC093116, AC099534, AP000498
S/G/Y/R/B/O	NT_005580	AB026898	38218378	3	RH58548	3	135.41					1	AC026346,	AB026898, AC026346, AC093116, AC099534, AP000498
S/G/Y/R/B/O	NT_005580	AB026898	38218378	3	WI-8958					3	147.20	1	AC026346,	AB026898, AC026346, AC093116, AC099534, AP000498
S/G/Y/R/B/O	NT_005580	AB026898	38218564	3	RH41693	3	135.41					1		AB026898, AC093116, AC099534, AP000498
S/G/Y/R/B/O	NT_005580	AB026898	38221186	3	RH58066	3	132.37					1	AC026346,	AB026898, AC026346, AC093116, AC099534, AP000498
S/G/Y/R/B/O	NT_005580	AB026898	38221186	3	WI-6058					3	143.50	1	AC026346,	AB026898, AC026346, AC093116, AC099534, AP000498
S/G/Y/R/B/O	NT_005580	AB026898	38238272	3	RH58252	3	135.41					1	AC026346,	AB026898, AC026346, AC093116, AC099534, AP000498
S/G/Y/R/B/O	NT_005580	AB026898	38238272	3	SGC30812					3	146.00	1	AC026346,	AB026898, AC026346, AC093116, AC099534, AP000498
S/G/Y/R/B/O	NT_005580	AB026898	38302959	3	RH66757	3	133.68					1	AC026346,	AB026898, AC026346, AC093116, AC099534, AP000499
S/G/Y/R/B/O	NT_005580	AB026898	38350631	3	RH25146	3	133.68					1	AC026346,	AB026898, AC016156, AC026346, AC055722, AC093116, AP000499
S/G/Y/R/B/O	NT_005580	AB026898	38351204	3	RH48392	3	135.41					1	AC026346,	AB026898, AC016156, AC026346, AC055722, AC093116, AP000499
S/G/Y/R/B/O	NT_005580	AB026898	38352092	3	RH10316	3	135.41					1	AC026346,	AB026898, AC016156, AC026346, AC055722, AC093116, AP000499
S/G/Y/R/B/O	NT_005580	AB026898	38352104	3	RH24985	3	132.37					1	AC026346,	AB026898, AC016156, AC026346, AC055722, AC093116, AP000499
S/G/Y/R/B/O	NT_005580	AB026898	38352200	3	RH47460	3	133.50					1	AC026346,	AB026898, AC016156, AC026346, AC055722, AC093116, AP000499
S/G/Y/R/B/O	NT_005580	AP000500	38467379	3	RH42042	3	135.41					1		AC016156, AC092417
S/G/Y/R/B/O	NT_005580	AP000500	38467379	3	RH1048			3	1533.00			1		AC016156, AC092417
S/G/Y/R/B/O	NT_005580	AP000500	38537139	3	RH58470	3	132.27			3	143.40	1		AC092417, AP000500
S/G/Y/R/B/O	NT_005580	AP000500	38537538	3	RH65171	3	119.63					1		AC092417, AP000500
S/G/Y/R/B/O	NT_005580	AP000500	38585103	3	RH65433	3	133.68					1		AB008681, AC092417, AP000500
S/G/Y/R/B/O	NT_005580	AP000500	38590012	3	RH99151	3	135.41					1		AB008681, AP000500
S/G/Y/R/B/O	NT_005580	AP000500	38590054	3	RH41586	3	135.41					1		AB008681, AP000500
S/G/Y/R/B/O	NT_005580	AP000500	38621883	3	RH94338	3	133.50					1		AP000500
S/G/Y/R/B/O	NT_005580	AP000500	38622794	3	RH32389			3	1604.00			1		AP000500
S/G/Y/R/B/O	NT_005580	AC104308	38695916	1	RH71422	3	125.57					1	AC024097,	AC024097, AC104308
S/G/Y/R/B/O	NT_005580	AC104308	38701811	1	WI-16264					3	132.60	1	AC024097,	AC024097, AC104308
S/G/Y/R/B/O	NT_005580	AC104308	38701811	1	RH58224	3	119.63					1	AC024097,	AC024097, AC104308
S/G/Y/R/B/O	NT_005580	AC104308	38730517	1	RH79954	3	116.88					1	AC055785,	AC055785, AC104308
S/G/Y/R/B/O	NT_005580	AC055785	38667832	1
S/G/Y/R/B/O	NT_005580	AC016943	38738023	3	WI-18440					3	132.70	1	AC055785,	AC016943, AC055785
S/G/Y/R/B/O	NT_005580	AC016943	38738023	3	RH58379	3	117.50					1	AC055785,	AC016943, AC055785
S/G/Y/R/B/O	NT_005580	AC016943	38764412	3	WI-10468					3	133.00	1	AC055785,	AC016943, AC055785
S/G/Y/R/B/O	NT_005580	AC016943	38801587	3	RH71186	3	125.57					1	AC055785,	AC016943, AC055785
S/G/Y/R/B/O	NT_005580	AC016943	38842658	3	RH102209	3	124.93					1		AC016943
S/G/Y/R/B/O	NT_005580	AC016943	38844686	3	RH58550	3	122.75	3	1345.00			1		AC016943
S/G/Y/R/B/O	NT_005580	AC016943	38844686	3	SGC32030					3	126.30	1		AC016943
S/G/Y/R/B/O	NT_005580	AC026346	39073011	1

NT_005580 (cont)

Links	Contig	Chr Start	STS Marker	GM Chr	GM99 GB4	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_005580	-	RH12233	3	133.68			0	AP000497,	AC105752, AP000497
S/G/Y/R/B/O	NT_005580	-	RH25218	3	128.92			0	AP000493,	AC009813, AC092055, AP000493
S/G/Y/R/B/O	NT_005580	-	RH36200	3	130.65			0	AP000496,	AC046188, AC093415, AC105752, AP000496
S/G/Y/R/B/O	NT_005580	-	RH58026	3	127.01	3	134.00	0
S/G/Y/R/B/O	NT_005580	-	RH58699	3	133.50			0
S/G/Y/R/B/O	NT_005580	-	RH58832	3	124.12			1	AC092053, AY016370,	AC092053, AC104850, AY016370
S/G/Y/R/B/O	NT_005580	-	RH58901	3	132.37			1	AC104307,	AC069215, AC104307, AL359456
S/G/Y/R/B/O	NT_005580	-	RH58905	3	132.48	3	143.40	1	AC104307,	AC104307, AL359456
S/G/Y/R/B/O	NT_005580	-	RH80753	3	133.09			0