Chromosome 3 - RH Maps - Single Contig

Chromosome 3 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_005927	NT_029265	NT_028123	NT_006044	NT_022517	NT_005507	NT_022516	NT_005564
NT_005762	NT_005646	NT_028139	NT_033044	NT_005502	NT_022539	NT_022464	NT_005580
NT_033049	NT_005498	NT_006036	NT_005825	NT_029949	NT_005991	NT_005585	NT_022567
NT_028129	NT_005990	NT_030623	NT_022439	NT_006014	NT_033032	NT_005986	NT_033015
NT_033038	NT_022552	NT_005787	NT_033040	NT_022481	NT_005607	NT_033026	NT_005999
NT_005531	NT_022473	NT_022423	NT_005510	NT_022510	NT_022665	NT_028127	NT_022400
NT_005530	NT_029258	NT_022442	NT_005769	NT_005526	NT_022540	NT_022717	NT_005644
NT_022446	NT_005583	NT_033034	NT_005882	NT_033036	NT_022419	NT_006031	NT_022551
NT_022459	NT_033029	NT_022713	NT_022460	NT_033011	NT_022554	NT_022720	NT_005684
NT_005663	NT_033018	NT_022420	NT_033043	NT_022642	NT_005791	NT_022452	NT_022435
NT_033028	NT_022497	NT_022625	NT_005568	NT_022401	NT_033031	NT_026983	NT_022475
NT_033037	NT_022451	NT_005509	NT_005527	NT_033050	NT_030634	NT_033041	NT_005863
NT_022454	NT_022607	NT_022453	NT_025670	NT_030622	NT_033045	NT_022728	NT_031768
NT_019350	NT_022434	NT_029256	NT_022405	NT_022569	NT_006042	NT_022484	NT_005795
NT_015150	NT_022445	NT_030625	NT_005532	NT_029269	NT_022455	NT_029931	NT_033022
NT_029257	NT_005513	NT_005994	NT_030635	NT_022411	NT_005824	NT_033021	NT_005543
NT_005588	NT_006029	NT_022513	NT_005523	NT_033014	NT_006025	NT_022404	NT_005823
NT_033019	NT_022393	NT_025663	NT_005567	NT_030630	NT_005969	NT_033051	NT_025664
NT_005655	NT_022503	NT_022632	NT_033024	NT_022416	NT_022432	NT_033020	NT_033035
NT_033042	NT_005832	NT_022502	NT_005772	NT_019358	NT_005591	NT_005775	NT_022616
NT_005540	NT_029939	NT_005616	NT_005539	NT_022555	NT_005849	NT_005657	NT_005678
NT_005846	NT_005612	NT_033030	NT_022463	NT_022594	NT_022449	NT_022421	NT_005744
NT_022565	NT_022518	NT_005638	NT_022397	NT_022700	NT_022422	NT_025667	NT_033052
NT_022472	NT_033033	NT_022526	NT_022674	NT_022458	NT_022509	NT_005635	NT_033053
NT_005950	NT_022396	NT_005952	NT_022406	NT_022676	NT_029253	NT_030638	NT_005910
NT_022549	NT_033009	NT_005911	NT_005962	NT_031766	NT_005883	NT_005501	NT_005571
NT_033017	NT_033013	NT_029928	NT_033010	NT_005834	NT_005535	NT_033012	NT_033016
NT_022508

NT_005502

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_005502	AC069423	33789976	1
S/G/Y/R/B/O	NT_005502	AC093114	33852299	3	RH12697	3	123.61					1	AC026314, AC069423,	AC026314, AC069423, AC093114
S/G/Y/R/B/O	NT_005502	AC093114	33852311	3	RH58330	3	124.02			3	130.30	1	AC026314, AC069423,	AC026314, AC069423, AC093114
S/G/Y/R/B/O	NT_005502	AC093114	33852407	3	RH58011	3	122.42			3	130.40	1	AC026314, AC069423,	AC026314, AC069423, AC093114
S/G/Y/R/B/O	NT_005502	AC093114	33854448	3	RH26021	3	124.84					1	AC026314, AC069423,	AC026314, AC069423, AC093114
S/G/Y/R/B/O	NT_005502	AC093114	33962869	3	RH92587	3	124.02					1	AC026314, AC069423,	AC026314, AC069423, AC093114
S/G/Y/R/B/O	NT_005502	AC093114	33963026	3	RH58762	3	124.02			3	127.90	1	AC026314, AC069423,	AC026314, AC069423, AC093114
S/G/Y/R/B/O	NT_005502	AC093114	33963065	3	RH10608	3	118.07					1	AC026314, AC069423,	AC026314, AC069423, AC093114
S/G/Y/R/B/O	NT_005502	AC093114	33963163	3	RH12892	3	124.02					1	AC026314, AC069423,	AC026314, AC069423, AC093114
S/G/Y/R/B/O	NT_005502	AC093114	33963780	3	RH58900	3	123.51			3	127.80	1	AC026314, AC069423,	AC026314, AC069423, AC093114
S/G/Y/R/B/O	NT_005502	AC026314	33989354	1
S/G/Y/R/B/O	NT_005502	AC113170	34051164	1	RH80547	3	118.41					1		AC113170
S/G/Y/R/B/O	NT_005502	AC113170	34076947	1	WI-3516					3	128.20	1		AC113170
S/G/Y/R/B/O	NT_005502	AC113170	34134009	1	WI-5879					3	130.60	1		AC113170
S/G/Y/R/B/O	NT_005502	AC112220	34171124	1
S/G/Y/R/B/O	NT_005502	AC113168	34277852	1	RH47949	3	124.02					1	AC112220,	AC112220, AC113168
S/G/Y/R/B/O	NT_005502	AC113168	34325580	1	RH16498	3	124.02					1		AC113168
S/G/Y/R/B/O	NT_005502	AC113168	34346963	1	RH58726	3	119.41			3	130.40	2	AC096509,	AC078780, AC096509, AC113168
S/G/Y/R/B/O	NT_005502	AC113168	34346967	1	RH47210	3	124.02					2	AC096509,	AC078780, AC096509, AC113168
S/G/Y/R/B/O	NT_005502	AC113168	34347025	1	RH1770			3	1343.00			2	AC096509,	AC078780, AC096509, AC113168
S/G/Y/R/B/O	NT_005502	AC113168	34347071	1	RH10953	3	124.02					2	AC096509,	AC078780, AC096509, AC113168
S/G/Y/R/B/O	NT_005502	AC113168	34347126	1	RH66925	3	116.16					2	AC096509,	AC078780, AC096509, AC113168
S/G/Y/R/B/O	NT_005502	AC113168	34348247	1	RH48396	3	123.07					1		AC078780, AC113168
S/G/Y/R/B/O	NT_005502	AC113168	34349438	1	RH93901	3	121.79					1		AC113168
S/G/Y/R/B/O	NT_005502	AC113168	34349923	1	RH75178	3	119.69					1		AC113168
S/G/Y/R/B/O	NT_005502		-		RH11659	3	118.75					1	AC079840,	AB061823, AC079840
S/G/Y/R/B/O	NT_005502		-		SGC32030					3	126.30	1	AC016943,	AC016943
S/G/Y/R/B/O	NT_005502		-		RH18290	3	120.18					1	AC006059, AC092041, AC092047, AC099052,	AC006059, AC092041, AC092047, AC099052
S/G/Y/R/B/O	NT_005502		-		AFM080XA5					3	127.90	0		AC078780
S/G/Y/R/B/O	NT_005502		-		RH41985	3	119.08					0
S/G/Y/R/B/O	NT_005502		-		CHLC.GATA8A06.428					3	130.10	0
S/G/Y/R/B/O	NT_005502		-		RH58337	3	124.02					1	AC112211,	AC112211
S/G/Y/R/B/O	NT_005502		-		RH58497	3	122.42					0
S/G/Y/R/B/O	NT_005502		-		RH58618	3	120.25					1	AC099557, AC110718,	AC099557, AC110718
S/G/Y/R/B/O	NT_005502		-		RH65996	3	122.42					0
S/G/Y/R/B/O	NT_005502		-		RH66663	3	122.75					0
S/G/Y/R/B/O	NT_005502		-		RH68922	3	123.15					1	AC112211,	AC112211
S/G/Y/R/B/O	NT_005502		-		RH77950	3	121.46					0
S/G/Y/R/B/O	NT_005502		-		RH78547	3	119.63					2	AC006058, AC079387, AC107625,	AC006058, AC079387, AC107625
S/G/Y/R/B/O	NT_005502		-		RH80080	3	119.96					1	AC073219, AC092053,	AC073219, AC092053
S/G/Y/R/B/O	NT_005502		-		RH81029	3	120.18					1	AC092058,	AC092058
S/G/Y/R/B/O	NT_005502		-		RH98165	3	120.07					0
S/G/Y/R/B/O	NT_005502		-		RH91803	3	124.02					1	AC092053, AY016370,	AC092053, AC104850, AY016370