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  Chromosome 3 - RH Maps - Single Contig
 

Chromosome 3 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_005927 NT_029265 NT_028123 NT_006044 NT_022517 NT_005507 NT_022516 NT_005564
NT_005762 NT_005646 NT_028139 NT_033044 NT_005502 NT_022539 NT_022464 NT_005580
NT_033049 NT_005498 NT_006036 NT_005825 NT_029949 NT_005991 NT_005585 NT_022567
NT_028129 NT_005990 NT_030623 NT_022439 NT_006014 NT_033032 NT_005986 NT_033015
NT_033038 NT_022552 NT_005787 NT_033040 NT_022481 NT_005607 NT_033026 NT_005999
NT_005531 NT_022473 NT_022423 NT_005510 NT_022510 NT_022665 NT_028127 NT_022400
NT_005530 NT_029258 NT_022442 NT_005769 NT_005526 NT_022540 NT_022717 NT_005644
NT_022446 NT_005583 NT_033034 NT_005882 NT_033036 NT_022419 NT_006031 NT_022551
NT_022459 NT_033029 NT_022713 NT_022460 NT_033011 NT_022554 NT_022720 NT_005684
NT_005663 NT_033018 NT_022420 NT_033043 NT_022642 NT_005791 NT_022452 NT_022435
NT_033028 NT_022497 NT_022625 NT_005568 NT_022401 NT_033031 NT_026983 NT_022475
NT_033037 NT_022451 NT_005509 NT_005527 NT_033050 NT_030634 NT_033041 NT_005863
NT_022454 NT_022607 NT_022453 NT_025670 NT_030622 NT_033045 NT_022728 NT_031768
NT_019350 NT_022434 NT_029256 NT_022405 NT_022569 NT_006042 NT_022484 NT_005795
NT_015150 NT_022445 NT_030625 NT_005532 NT_029269 NT_022455 NT_029931 NT_033022
NT_029257 NT_005513 NT_005994 NT_030635 NT_022411 NT_005824 NT_033021 NT_005543
NT_005588 NT_006029 NT_022513 NT_005523 NT_033014 NT_006025 NT_022404 NT_005823
NT_033019 NT_022393 NT_025663 NT_005567 NT_030630 NT_005969 NT_033051 NT_025664
NT_005655 NT_022503 NT_022632 NT_033024 NT_022416 NT_022432 NT_033020 NT_033035
NT_033042 NT_005832 NT_022502 NT_005772 NT_019358 NT_005591 NT_005775 NT_022616
NT_005540 NT_029939 NT_005616 NT_005539 NT_022555 NT_005849 NT_005657 NT_005678
NT_005846 NT_005612 NT_033030 NT_022463 NT_022594 NT_022449 NT_022421 NT_005744
NT_022565 NT_022518 NT_005638 NT_022397 NT_022700 NT_022422 NT_025667 NT_033052
NT_022472 NT_033033 NT_022526 NT_022674 NT_022458 NT_022509 NT_005635 NT_033053
NT_005950 NT_022396 NT_005952 NT_022406 NT_022676 NT_029253 NT_030638 NT_005910
NT_022549 NT_033009 NT_005911 NT_005962 NT_031766 NT_005883 NT_005501 NT_005571
NT_033017 NT_033013 NT_029928 NT_033010 NT_005834 NT_005535 NT_033012 NT_033016
NT_022508


  NT_005994
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005994AC0483481262594101RH936413430.37    1AC010858, AC010858, AC048348
S/G/Y/R/B/O NT_005994AC0108581262403161RH175703430.63    1AC048348, AC010858, AC048348
S/G/Y/R/B/O NT_005994AC0108581262403921RH788443430.31    1AC048348, AC010858, AC048348
S/G/Y/R/B/O NT_005994AC0108581262410881RH38246  36005.00  1AC048348, AC010858, AC048348
S/G/Y/R/B/O NT_005994AC0108581262411431RH912153430.48    1AC048348, AC010858, AC048348
S/G/Y/R/B/O NT_005994AC0695711250775161          
S/G/Y/R/B/O NT_005994AF3898521250831013          
S/G/Y/R/B/O NT_005994AC0800961251477331RH584403447.29  3546.001 AC080096
S/G/Y/R/B/O NT_005994AC0800961251477351RH1033763446.51    1 AC080096
S/G/Y/R/B/O NT_005994AC0800961251523681RH787613446.55    1 AC080096
S/G/Y/R/B/O NT_005994AC0788101252576041WI-5963    3527.301 AC027294, AC078810
S/G/Y/R/B/O NT_005994AC0720311253470231RH369433431.00    1 AC072031
S/G/Y/R/B/O NT_005994AC0720311253470281RH126773430.17    1 AC072031
S/G/Y/R/B/O NT_005994AC0720311253471181RH581893430.00  3526.801 AC072031
S/G/Y/R/B/O NT_005994AC0720311265643111CHLC.GGAA8B03    3530.201AC078810, AC072031, AC078810
S/G/Y/R/B/O NT_005994AC0720311265975751RH1037473430.00    1AC080098, AC072031, AC080098
S/G/Y/R/B/O NT_005994AC0720311266191541RH31713  35984.00  1AC080098, AC072031, AC080098
S/G/Y/R/B/O NT_005994AF3898511253659563RH488583439.88    1AC069571, AC069571, AF389851
S/G/Y/R/B/O NT_005994AF3898511253659753RH675673443.76    1AC069571, AC069571, AF389851
S/G/Y/R/B/O NT_005994AF3898511253670983RH754713439.99    1AC069571, AC069571, AF389851
S/G/Y/R/B/O NT_005994AF3898511253828733RH31719  36129.00  1AC055752, AC055752, AL357119
S/G/Y/R/B/O NT_005994AC0557521254239081D3S1551    3542.801AC069571, AC055752, AC069571
S/G/Y/R/B/O NT_005994AC0557521254239081RH30057  36109.00  1AC069571, AC055752, AC069571
S/G/Y/R/B/O NT_005994AC0679981254861031          
S/G/Y/R/B/O NT_005994AC1086881255111653RH936523441.44    2AC026618, AC055752, AC067998, AC092893, AC019289, AC026618, AC032043, AC055752, AC067998, AC092893, AC108688, AL357119
S/G/Y/R/B/O NT_005994AC1086881255173773WI-17698    3541.402AC026618, AC055752, AC092893, AC019289, AC026618, AC032043, AC055752, AC092893, AC108688, AL357119
S/G/Y/R/B/O NT_005994AC1086881255173773RH581413442.85    2AC026618, AC055752, AC092893, AC019289, AC026618, AC032043, AC055752, AC092893, AC108688, AL357119
S/G/Y/R/B/O NT_005994AC1086881255180263RH415343442.75    2AC026618, AC055752, AC067998, AC092893, AC019289, AC026618, AC032043, AC055752, AC067998, AC092893, AC108688, AL357119
S/G/Y/R/B/O NT_005994AC1086881256030263WI-16965    3541.002AC026618, AC092893, AC019289, AC026618, AC032043, AC092893, AC108688
S/G/Y/R/B/O NT_005994AC1086881256030263RH582393445.50    2AC026618, AC092893, AC019289, AC026618, AC032043, AC092893, AC108688
S/G/Y/R/B/O NT_005994AC0266181256992581          
S/G/Y/R/B/O NT_005994AC0928931257009671          
S/G/Y/R/B/O NT_005994AC0929081259435123RH588273430.17  3528.001 AC092908
S/G/Y/R/B/O NT_005994AC0929081259443963RH359423430.00    1 AC026506, AC092908
S/G/Y/R/B/O NT_005994AC0929081259903813RH912643430.31    1 AC092908
S/G/Y/R/B/O NT_005994AC0968611259918843RH585453426.8235952.003536.301AC092908, AC026506, AC092908, AC096861
S/G/Y/R/B/O NT_005994AC0968611260609633RH685363428.13    1 AC096861
S/G/Y/R/B/O NT_005994AC0968611260610183RH586603430.27  3528.401 AC096861
S/G/Y/R/B/O NT_005994AC0837981260909033RH450213429.47    1 AC083798
S/G/Y/R/B/O NT_005994AC0837981260922743RH587403430.27  3528.401 AC083798
S/G/Y/R/B/O NT_005994AC0837981260923983RH586963427.02  3536.201 AC083798
S/G/Y/R/B/O NT_005994AC0837981260926673RH580583430.17  3537.301 AC083798
S/G/Y/R/B/O NT_005994AC0837981260930013RH258903430.31    1 AC083798
S/G/Y/R/B/O NT_005994AC0837981260961363RH581443430.00  3537.101 AC083798
S/G/Y/R/B/O NT_005994AC0837981260962033RH14697  35952.00  1 AC083798
S/G/Y/R/B/O NT_005994AC0837981260962243RH782743430.37    1 AC083798
S/G/Y/R/B/O NT_005994AC0837981260962983RH785313430.53    1  
S/G/Y/R/B/O NT_005994AC0837981260964123RH580233430.0035943.003537.301 AC083798
S/G/Y/R/B/O NT_005994AC0837981261027533RH669313428.65    1 AC083798
S/G/Y/R/B/O NT_005994AC0837981261043443RH123743430.00    1 AC083798


  NT_005994 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005994AC0837981261045463RH126493430.37    1 AC083798
S/G/Y/R/B/O NT_005994AC0837981261061693RH918363430.00    1 AC083798
S/G/Y/R/B/O NT_005994AC0837981262322153RH584413423.5635957.003530.202AC026766, AC068754, AC026766, AC068754, AC083798
S/G/Y/R/B/O NT_005994AC0687541263312661RH584413423.5635957.003530.202AC026766, AC083798, AC026766, AC068754, AC083798
S/G/Y/R/B/O NT_005994AC0687541263323961RH180153423.87    1AC026766, AC026766, AC068754
S/G/Y/R/B/O NT_005994AC0267661263681191RH1034743423.87    1AC068754, AC026766, AC068754
S/G/Y/R/B/O NT_005994AC0686301264799563RH1021823423.87    1 AC068630
S/G/Y/R/B/O NT_005994AC0686301264810313RH582803430.17  3527.001 AC016918, AC068630
S/G/Y/R/B/O NT_005994AC0686301264811473RH114623423.87    1 AC016918, AC068630
S/G/Y/R/B/O NT_005994AC0686301265419033WI-4616    3530.101 AC068630
S/G/Y/R/B/O NT_005994AC0800981266249113          
S/G/Y/R/B/O NT_005994AC0787941267748083RH415773429.44    1AC011116, AC084300, AC011116, AC078794, AC084300, AC092975
S/G/Y/R/B/O NT_005994AC0787941267751033RH584163431.21  3537.501AC011116, AC084300, AC011116, AC078794, AC084300, AC092975
S/G/Y/R/B/O NT_005994AC0787941267764353RH122323429.37    1AC011116, AC084300, AC011116, AC078794, AC084300, AC092975
S/G/Y/R/B/O NT_005994AC0787941267764363RH8865  35900.00  1AC011116, AC084300, AC011116, AC078794, AC084300, AC092975
S/G/Y/R/B/O NT_005994AC0787941267876993RH1031543430.37    1AC011116, AC084300, AC011116, AC078794, AC084300, AC092975
S/G/Y/R/B/O NT_005994AC0787941267898623RH703213429.79    1AC011116, AC084300, AC011116, AC078794, AC084300, AC092975
S/G/Y/R/B/O NT_005994AC0787941267898623RH32725  35910.00  1AC011116, AC084300, AC011116, AC078794, AC084300, AC092975
S/G/Y/R/B/O NT_005994AC0787941268047593RH756123430.27    1AC011116, AC084300, AC011116, AC078794, AC084300, AC092975
S/G/Y/R/B/O NT_005994AC0111161268472921          
S/G/Y/R/B/O NT_005994AC0843001268472981          
S/G/Y/R/B/O NT_005994AC0720411268656453          
S/G/Y/R/B/O NT_005994AC0686331270449883D3S1303    3535.301 AC016918
S/G/Y/R/B/O NT_005994AC0686331270449883RH56053418.82    1 AC016918
S/G/Y/R/B/O NT_005994AC0686331270449883RH735  35779.00  1 AC016918
S/G/Y/R/B/O NT_005994AC0686331271140903RH984603418.82    1 AC068633, AC092772
S/G/Y/R/B/O NT_005994AC0927431271371893          
S/G/Y/R/B/O NT_005994AC0263601272193223RH31709  35790.00  1 AC026360, AC092772
S/G/Y/R/B/O NT_005994AC0263301274195163RH30830  35805.00  1 AC005827, AC026330
S/G/Y/R/B/O NT_005994AC0689841275061953NIB1484    3529.001 AC068984
S/G/Y/R/B/O NT_005994AC0689841275061953RH582723418.82    1 AC068984
S/G/Y/R/B/O NT_005994AC0689841275062593RH170593418.82    1 AC068984
S/G/Y/R/B/O NT_005994AC0070231275527213RH941623421.43    1 AC007023
S/G/Y/R/B/O NT_005994AC0120321276634023          
S/G/Y/R/B/O NT_005994AC0838001278173031RH255573418.72    1 AC083800
S/G/Y/R/B/O NT_005994AC0838001278174811RH790453418.72    1 AC083800
S/G/Y/R/B/O NT_005994AC0929811280229373SGC32480    3534.401 AC017034, AC074271, AC092981
S/G/Y/R/B/O NT_005994AC0929811280229373RH583573418.72    1 AC017034, AC074271, AC092981
S/G/Y/R/B/O NT_005994AC0929811280229373RH32423  35830.00  1 AC017034, AC074271, AC092981
S/G/Y/R/B/O NT_005994AC0929811280250743RH990563418.72    1 AC017034, AC074271, AC092981
S/G/Y/R/B/O NT_005994 - RH105523423.97    0 AC024907
S/G/Y/R/B/O NT_005994 - RH31711  36017.00  1AC022194, AC063920, AC069239, AC021652, AC022194, AC024907, AC063920, AC069239
S/G/Y/R/B/O NT_005994 - AFM044XB2    3527.802AC055739, AC068978, AC083886, AC055739, AC068978, AC083886
S/G/Y/R/B/O NT_005994 - RH258523430.31    0  
S/G/Y/R/B/O NT_005994 - RH31715  36036.00  1AC055749, AC055749
S/G/Y/R/B/O NT_005994 - WI-11302    3528.501AC069506, AC069506
S/G/Y/R/B/O NT_005994 - RH417043422.93    0 AC024907
S/G/Y/R/B/O NT_005994 - RH38268  35925.00  0 AC024907
S/G/Y/R/B/O NT_005994 - SGC34980    3528.601AC078986, AC078986
S/G/Y/R/B/O NT_005994 - RH680453430.31    0AC010858, AC010858


  NT_005994 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005994 - RH813  36043.00  0  
S/G/Y/R/B/O NT_005994 - SGC33762    3528.601AC069506, AC069506
S/G/Y/R/B/O NT_005994 - RH688083422.93    0 AC024907
S/G/Y/R/B/O NT_005994 - SGC33976    3528.601AC083886, AC084188, AC090552, AC083886, AC084188, AC090552
S/G/Y/R/B/O NT_005994 - RH699093422.31    0 AC024907
S/G/Y/R/B/O NT_005994 - WI-4825    3528.602AC055739, AC068978, AC083886, AC055739, AC068978, AC083886
S/G/Y/R/B/O NT_005994 - RH756453428.96    0  
S/G/Y/R/B/O NT_005994 - WI-18123    3532.700 AC027294
S/G/Y/R/B/O NT_005994 - RH764533430.80    1AC073352, AC069519, AC073352, AC074271
S/G/Y/R/B/O NT_005994 - IB1423    3532.700 AC024907
S/G/Y/R/B/O NT_005994 - RH912673422.57    0 AC024907
S/G/Y/R/B/O NT_005994 - WI-21827    3532.701AC022194, AC063920, AC069239, AC079841, AC021652, AC022194, AC063920, AC069239, AC079841
S/G/Y/R/B/O NT_005994 - RH992103430.17    0AC026766, AC068630, AC068754, AB031325, AC026766, AC068630, AC068754
S/G/Y/R/B/O NT_005994 - WI-9270    3532.700 AC024907
S/G/Y/R/B/O NT_005994 - WI-22003    3532.800 AC024907
S/G/Y/R/B/O NT_005994 - SGC32031    3534.301AC009289, AC012534, AC106725, AC009289, AC012534, AC106725
S/G/Y/R/B/O NT_005994 - WI-21911    3534.401AC069444, AC069444
S/G/Y/R/B/O NT_005994 - TIGR-A002L11    3535.001AC063952, AC068844, AC078982, AC063952, AC068844, AC078982
S/G/Y/R/B/O NT_005994 - CHLC.GATA68F07    3535.301AC092691, AC092691
S/G/Y/R/B/O NT_005994 - WI-11332    3535.401AC023494, AC073352, AC023494, AC069519, AC073352, AC074271
S/G/Y/R/B/O NT_005994 - SGC34420    3535.601AC021867, AC021867