Home    Genome Browser    BLAT Search    Help
  Chromosome 3 - RH Maps - Single Contig
 

Chromosome 3 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_005927 NT_029265 NT_028123 NT_006044 NT_022517 NT_005507 NT_022516 NT_005564
NT_005762 NT_005646 NT_028139 NT_033044 NT_005502 NT_022539 NT_022464 NT_005580
NT_033049 NT_005498 NT_006036 NT_005825 NT_029949 NT_005991 NT_005585 NT_022567
NT_028129 NT_005990 NT_030623 NT_022439 NT_006014 NT_033032 NT_005986 NT_033015
NT_033038 NT_022552 NT_005787 NT_033040 NT_022481 NT_005607 NT_033026 NT_005999
NT_005531 NT_022473 NT_022423 NT_005510 NT_022510 NT_022665 NT_028127 NT_022400
NT_005530 NT_029258 NT_022442 NT_005769 NT_005526 NT_022540 NT_022717 NT_005644
NT_022446 NT_005583 NT_033034 NT_005882 NT_033036 NT_022419 NT_006031 NT_022551
NT_022459 NT_033029 NT_022713 NT_022460 NT_033011 NT_022554 NT_022720 NT_005684
NT_005663 NT_033018 NT_022420 NT_033043 NT_022642 NT_005791 NT_022452 NT_022435
NT_033028 NT_022497 NT_022625 NT_005568 NT_022401 NT_033031 NT_026983 NT_022475
NT_033037 NT_022451 NT_005509 NT_005527 NT_033050 NT_030634 NT_033041 NT_005863
NT_022454 NT_022607 NT_022453 NT_025670 NT_030622 NT_033045 NT_022728 NT_031768
NT_019350 NT_022434 NT_029256 NT_022405 NT_022569 NT_006042 NT_022484 NT_005795
NT_015150 NT_022445 NT_030625 NT_005532 NT_029269 NT_022455 NT_029931 NT_033022
NT_029257 NT_005513 NT_005994 NT_030635 NT_022411 NT_005824 NT_033021 NT_005543
NT_005588 NT_006029 NT_022513 NT_005523 NT_033014 NT_006025 NT_022404 NT_005823
NT_033019 NT_022393 NT_025663 NT_005567 NT_030630 NT_005969 NT_033051 NT_025664
NT_005655 NT_022503 NT_022632 NT_033024 NT_022416 NT_022432 NT_033020 NT_033035
NT_033042 NT_005832 NT_022502 NT_005772 NT_019358 NT_005591 NT_005775 NT_022616
NT_005540 NT_029939 NT_005616 NT_005539 NT_022555 NT_005849 NT_005657 NT_005678
NT_005846 NT_005612 NT_033030 NT_022463 NT_022594 NT_022449 NT_022421 NT_005744
NT_022565 NT_022518 NT_005638 NT_022397 NT_022700 NT_022422 NT_025667 NT_033052
NT_022472 NT_033033 NT_022526 NT_022674 NT_022458 NT_022509 NT_005635 NT_033053
NT_005950 NT_022396 NT_005952 NT_022406 NT_022676 NT_029253 NT_030638 NT_005910
NT_022549 NT_033009 NT_005911 NT_005962 NT_031766 NT_005883 NT_005501 NT_005571
NT_033017 NT_033013 NT_029928 NT_033010 NT_005834 NT_005535 NT_033012 NT_033016
NT_022508


  NT_005646
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005646AC109586271500101RH65615397.09    1AC093412, AC093412, AC109586
S/G/Y/R/B/O NT_005646AC109586271662311RH13319394.6531114.00  1AC093412, AC093412, AC109586
S/G/Y/R/B/O NT_005646AC093412271295941RH58137395.05  3103.101 AC093412
S/G/Y/R/B/O NT_005646AC093412271295951RH45316397.09    1 AC093412
S/G/Y/R/B/O NT_005646AC093142273555011D3S2350    3110.401 AC093142
S/G/Y/R/B/O NT_005646AC098970273929071          
S/G/Y/R/B/O NT_005646AC018428275742121RH103698397.40    1AC025543, AC097361, AC018428, AC025543, AC097361
S/G/Y/R/B/O NT_005646AC025543275426071          
S/G/Y/R/B/O NT_005646AC097361275442791          
S/G/Y/R/B/O NT_005646AC067874277077331          
S/G/Y/R/B/O NT_005646AC012262278479933RH924503114.77    1 AC012262
S/G/Y/R/B/O NT_005646AC012262278648923RH767003100.33    1 AC012262
S/G/Y/R/B/O NT_005646AC098650278984651          
S/G/Y/R/B/O NT_005646AC098616280414433RH38033  31109.00  1AC093142, AC093142, AC098616
S/G/Y/R/B/O NT_005646AC098616280417173RH58135397.29  3108.501AC093142, AC093142, AC098616
S/G/Y/R/B/O NT_005646AC098616280496473RH910983117.16    1AC093142, AC093142, AC098616
S/G/Y/R/B/O NT_005646AC092503281280623RH67559396.59    1AC098615, AC098616, AC092503, AC098615, AC098616
S/G/Y/R/B/O NT_005646AC025081282495101          
S/G/Y/R/B/O NT_005646AC092415282808473RH487823116.49    1AC025081, AC025081, AC092415
S/G/Y/R/B/O NT_005646AC092415283307573AFM319XG5    3106.601AC025081, AC025081, AC092415
S/G/Y/R/B/O NT_005646AC022187284387821          
S/G/Y/R/B/O NT_005646AC098973284476283RH927253116.49    2AC104188, AC098973, AC104188
S/G/Y/R/B/O NT_005646AC098973284610723RH15066396.36    1 AC098973
S/G/Y/R/B/O NT_005646AC098973284610723RH658  31098.00  1 AC098973
S/G/Y/R/B/O NT_005646AC098614286604633RH47772396.78    1AC098973, AC098614, AC098973
S/G/Y/R/B/O NT_005646AC098614287338183WI-10423    3106.601AC025612, AC084418, AC025612, AC084418, AC098614
S/G/Y/R/B/O NT_005646AC084418288396071          
S/G/Y/R/B/O NT_005646AC025612288435991          
S/G/Y/R/B/O NT_005646AC099535306233411RH58200398.13  3103.001AC024936, AC024936, AC099535
S/G/Y/R/B/O NT_005646AC099535306799091RH92347396.78    1AC024936, AC024936, AC099535
S/G/Y/R/B/O NT_005646AC099535306850101RH488623116.82    1AC024936, AC024936, AC099535
S/G/Y/R/B/O NT_005646AC098615289967561RH31668  31087.00  1 AC098615
S/G/Y/R/B/O NT_005646AC098615290648301WI-10567    3102.901 AC098615
S/G/Y/R/B/O NT_005646AC099754292167523RH58246389.07    1AC114877, AC099754, AC114877
S/G/Y/R/B/O NT_005646AC099754292167523WI-20503    388.201AC114877, AC099754, AC114877
S/G/Y/R/B/O NT_005646AC099754292167523RH37931  31091.00  1AC114877, AC099754, AC114877
S/G/Y/R/B/O NT_005646AC114877292360671          
S/G/Y/R/B/O NT_005646AC103922292990303RH16632391.38    1AC114877, AC103922, AC114877
S/G/Y/R/B/O NT_005646AC103922293055803RH58616391.11  3101.701AC027438, AC027438
S/G/Y/R/B/O NT_005646AC103922293058273RH66445391.27    1AC027438, AC114877, AC027438, AC103922, AC114877
S/G/Y/R/B/O NT_005646AC027438294345021          
S/G/Y/R/B/O NT_005646AC092501294641493RH588093113.1531140.003115.701AC098650, AC092501, AC098650
S/G/Y/R/B/O NT_005646AC092501294642413RH166213117.33    1AC098650, AC092501, AC098650
S/G/Y/R/B/O NT_005646AC092501294773563RH581203106.84  3115.601AC098650, AC092501, AC098650
S/G/Y/R/B/O NT_005646AC092501294775033RH674163106.74    1AC098650, AC092501, AC098650
S/G/Y/R/B/O NT_005646AC021068296454103RH588393114.55  3115.901 AC021068
S/G/Y/R/B/O NT_005646AC021068297073123RH282903118.07    1AC092795, AC021068, AC092795
S/G/Y/R/B/O NT_005646AC092795298007763CHLC.GATA4F11    3115.901AC092796, AC092795, AC092796
S/G/Y/R/B/O NT_005646AC092796298281613          
S/G/Y/R/B/O NT_005646AC099048299520183RH425573106.64  3116.601AC084000, AC084000, AC099048


  NT_005646 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005646AC099048299520183RH30071  31185.00  1AC084000, AC084000, AC099048
S/G/Y/R/B/O NT_005646AC084000300581101RH585763117.27  3115.801AC027512, AC027512, AC084000
S/G/Y/R/B/O NT_005646AC084000300636921RH929863106.84    1AC027512, AC097633, AC027512, AC084000, AC097633
S/G/Y/R/B/O NT_005646AC097633300704231          
S/G/Y/R/B/O NT_005646AC027512307526551RH30802  31168.00  1AC011724, AC011724, AC027512
S/G/Y/R/B/O NT_005646AC093558302012863RH58554391.1731093.003101.801AC027438, AC016958, AC026340, AC027438, AC093558
S/G/Y/R/B/O NT_005646AC098931303886733RH92252392.94    1 AC098931
S/G/Y/R/B/O NT_005646AC093555305005083RH102118392.94    1 AC093555
S/G/Y/R/B/O NT_005646AC093555305162323RH36414392.83    1 AC093555
S/G/Y/R/B/O NT_005646AC024936306037911          
S/G/Y/R/B/O NT_005646AC011724307436761          
S/G/Y/R/B/O NT_005646AC025614309748193RH781563113.56    1 AC025614
S/G/Y/R/B/O NT_005646AC116035310857841RH657053113.56    1 AC116035
S/G/Y/R/B/O NT_005646AC011040311326591          
S/G/Y/R/B/O NT_005646AC096921312691913RH155033111.12    1AC011040, AC011040
S/G/Y/R/B/O NT_005646AC096921313260273RH586723117.3331202.003116.901AC021650, AC026959, AC021650, AC026959, AC096921
S/G/Y/R/B/O NT_005646AC096921313260273RH471883117.27    1AC021650, AC026959, AC021650, AC026959, AC096921
S/G/Y/R/B/O NT_005646AC096921313270573RH670393106.84    1AC021650, AC026959, AC026959, AC021650, AC026959, AC026959, AC096921
S/G/Y/R/B/O NT_005646AC096921313390283RH586273112.09  3118.001AC026959, AC026959, AC096921
S/G/Y/R/B/O NT_005646AC026959313542671          
S/G/Y/R/B/O NT_005646AC021650313727401          
S/G/Y/R/B/O NT_005646AC095029314520471          
S/G/Y/R/B/O NT_005646AC107624315228011          
S/G/Y/R/B/O NT_005646AC099779316930833          
S/G/Y/R/B/O NT_005646AC023597317914721          
S/G/Y/R/B/O NT_005646AC098647318124091          
S/G/Y/R/B/O NT_005646AC115283318251891          
S/G/Y/R/B/O NT_005646AC094019327921221CHLC.GATA85F02    3117.501AC023523, AC023523, AC094019
S/G/Y/R/B/O NT_005646AC094019327921341CHLC.GATA27C08    3125.501AC023523, AC023523, AC094019
S/G/Y/R/B/O NT_005646AC094019328343551RH584113117.96  3118.001AC097639, AC094019, AC097639
S/G/Y/R/B/O NT_005646AC094019328362211RH107793113.89    1AC097639, AC094019, AC097639
S/G/Y/R/B/O NT_005646AC094019328369041RH357423113.12    1AC097639, AC094019, AC097639
S/G/Y/R/B/O NT_005646AC023523319324241CHLC.GATA11A10    3117.501AC094019, AC023523, AC094019
S/G/Y/R/B/O NT_005646AC108485319687041          
S/G/Y/R/B/O NT_005646AC107620320847571RH672353108.86    1AC108485, AC107620, AC108485
S/G/Y/R/B/O NT_005646AC092024322965131TIGR-A004W44    3117.201 AC092024
S/G/Y/R/B/O NT_005646AC092024322965131RH583283120.51    1 AC092024
S/G/Y/R/B/O NT_005646AC092024323110831RH1026803115.61    1 AC092024
S/G/Y/R/B/O NT_005646AC104643323199623RH756773116.88    1AC092024, AC092024, AC104643
S/G/Y/R/B/O NT_005646AC104643323201533RH1032633116.05    1AC092024, AC092024, AC104643
S/G/Y/R/B/O NT_005646AC104643323768743RH1021493112.09    1 AC104643
S/G/Y/R/B/O NT_005646AC104643324264293RH926483112.09    1 AC104643
S/G/Y/R/B/O NT_005646AC104643324578943WI-10744    3125.701 AC104643
S/G/Y/R/B/O NT_005646AC099540325036811RH184463116.05    1AL360074, AL591845, AL360074, AL591845
S/G/Y/R/B/O NT_005646AC099540325263351RH655853114.11    1 AC099540
S/G/Y/R/B/O NT_005646AC078781326971911RH579093117.78  3121.102AC012520, AC026763, AC046140, AC098475, AC012520, AC026763, AC046140, AC078781, AC098475
S/G/Y/R/B/O NT_005646AC097639328099461          
S/G/Y/R/B/O NT_005646AC103558329002513WI-10838    3115.901AC097639, AC097639, AC103558
S/G/Y/R/B/O NT_005646AC103558329996013RH8703  31260.00  1AC012520, AC098475, AC012520, AC098475, AC103558
S/G/Y/R/B/O NT_005646AC103558329997453RH8803  31260.00  1AC012520, AC098475, AC012520, AC098475, AC103558


  NT_005646 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005646AC103558330525393RH587873115.83  3125.801AC012520, AC046140, AC078781, AC098475, AC012520, AC046140, AC078781, AC098475, AC103558
S/G/Y/R/B/O NT_005646AC098475330794513RH579093117.78  3121.102AC012520, AC026763, AC046140, AC078781, AC012520, AC026763, AC046140, AC078781, AC098475
S/G/Y/R/B/O NT_005646AC098475331185493RH582363117.50  3124.201AC012520, AC026763, AC046140, AC078781, AC104306, AC011314, AC012520, AC026763, AC046140, AC078781, AC098475, AC104306
S/G/Y/R/B/O NT_005646AC098475331229243RH416473111.36    1AC012520, AC026763, AC046140, AC078781, AC104306, AC011314, AC012520, AC026763, AC046140, AC078781, AC098475, AC104306
S/G/Y/R/B/O NT_005646AC104306331497663RH166553115.83    1AC026763, AC026763
S/G/Y/R/B/O NT_005646AC104306331498263RH674213104.52    1AC026763, AC046140, AC078781, AC011314, AC026763, AC046140, AC078781, AC104306
S/G/Y/R/B/O NT_005646AC104306331511933WI-14154    3123.701AC026763, AC046140, AC078781, AC011314, AC026763, AC046140, AC078781, AC104306
S/G/Y/R/B/O NT_005646AC104306331511933RH587013120.51    1AC026763, AC046140, AC078781, AC011314, AC026763, AC046140, AC078781, AC104306
S/G/Y/R/B/O NT_005646AC104306331710503RH361483112.93    1AC026763, AC046140, AC078781, AC011314, AC026763, AC046140, AC078781, AC104306
S/G/Y/R/B/O NT_005646AC104306331944313RH581213117.96  3125.801AC026763, AC046140, AC011314, AC026763, AC046140, AC104306
S/G/Y/R/B/O NT_005646AC104306331944703RH124363121.46    1AC046140, AC046140
S/G/Y/R/B/O NT_005646AC104306331945543RH169333116.16    1AC026763, AC046140, AC011314, AC026763, AC046140, AC104306
S/G/Y/R/B/O NT_005646AC046140333028921          
S/G/Y/R/B/O NT_005646AC012520333052481          
S/G/Y/R/B/O NT_005646AC026763333084901          
S/G/Y/R/B/O NT_005646 - RH104069397.29    0AC092503, AC098615, AC098616, AC092503, AC098615, AC098616
S/G/Y/R/B/O NT_005646 - RH414843117.90    0  
S/G/Y/R/B/O NT_005646 - RH41671397.09    0  
S/G/Y/R/B/O NT_005646 - RH454863116.93    0  
S/G/Y/R/B/O NT_005646 - RH470993117.27    0AC107620, AC108485, AC107620, AC108485
S/G/Y/R/B/O NT_005646 - RH474043118.01    1AC098971, AC098971
S/G/Y/R/B/O NT_005646 - RH58010398.00  3104.300AC093412, AC093412
S/G/Y/R/B/O NT_005646 - RH583793117.50    1AC016943, AC055785, AC016943, AC055785
S/G/Y/R/B/O NT_005646 - WI-22303    3125.601AC006583, AC011816, AC006583, AC011816
S/G/Y/R/B/O NT_005646 - RH585593118.01    1AC012087, AC112217, AC012087, AC112217
S/G/Y/R/B/O NT_005646 - RH754333116.05    0AC026314, AC069423, AC093114, AC026314, AC069423, AC093114
S/G/Y/R/B/O NT_005646 - RH759993116.16    0  
S/G/Y/R/B/O NT_005646 - RH799543116.88    1AC055785, AC104308, AC055785, AC104308
S/G/Y/R/B/O NT_005646 - RH936903112.09    0