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Chromosome 3 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_005927 NT_029265 NT_028123 NT_006044 NT_022517 NT_005507 NT_022516 NT_005564
NT_005762 NT_005646 NT_028139 NT_033044 NT_005502 NT_022539 NT_022464 NT_005580
NT_033049 NT_005498 NT_006036 NT_005825 NT_029949 NT_005991 NT_005585 NT_022567
NT_028129 NT_005990 NT_030623 NT_022439 NT_006014 NT_033032 NT_005986 NT_033015
NT_033038 NT_022552 NT_005787 NT_033040 NT_022481 NT_005607 NT_033026 NT_005999
NT_005531 NT_022473 NT_022423 NT_005510 NT_022510 NT_022665 NT_028127 NT_022400
NT_005530 NT_029258 NT_022442 NT_005769 NT_005526 NT_022540 NT_022717 NT_005644
NT_022446 NT_005583 NT_033034 NT_005882 NT_033036 NT_022419 NT_006031 NT_022551
NT_022459 NT_033029 NT_022713 NT_022460 NT_033011 NT_022554 NT_022720 NT_005684
NT_005663 NT_033018 NT_022420 NT_033043 NT_022642 NT_005791 NT_022452 NT_022435
NT_033028 NT_022497 NT_022625 NT_005568 NT_022401 NT_033031 NT_026983 NT_022475
NT_033037 NT_022451 NT_005509 NT_005527 NT_033050 NT_030634 NT_033041 NT_005863
NT_022454 NT_022607 NT_022453 NT_025670 NT_030622 NT_033045 NT_022728 NT_031768
NT_019350 NT_022434 NT_029256 NT_022405 NT_022569 NT_006042 NT_022484 NT_005795
NT_015150 NT_022445 NT_030625 NT_005532 NT_029269 NT_022455 NT_029931 NT_033022
NT_029257 NT_005513 NT_005994 NT_030635 NT_022411 NT_005824 NT_033021 NT_005543
NT_005588 NT_006029 NT_022513 NT_005523 NT_033014 NT_006025 NT_022404 NT_005823
NT_033019 NT_022393 NT_025663 NT_005567 NT_030630 NT_005969 NT_033051 NT_025664
NT_005655 NT_022503 NT_022632 NT_033024 NT_022416 NT_022432 NT_033020 NT_033035
NT_033042 NT_005832 NT_022502 NT_005772 NT_019358 NT_005591 NT_005775 NT_022616
NT_005540 NT_029939 NT_005616 NT_005539 NT_022555 NT_005849 NT_005657 NT_005678
NT_005846 NT_005612 NT_033030 NT_022463 NT_022594 NT_022449 NT_022421 NT_005744
NT_022565 NT_022518 NT_005638 NT_022397 NT_022700 NT_022422 NT_025667 NT_033052
NT_022472 NT_033033 NT_022526 NT_022674 NT_022458 NT_022509 NT_005635 NT_033053
NT_005950 NT_022396 NT_005952 NT_022406 NT_022676 NT_029253 NT_030638 NT_005910
NT_022549 NT_033009 NT_005911 NT_005962 NT_031766 NT_005883 NT_005501 NT_005571
NT_033017 NT_033013 NT_029928 NT_033010 NT_005834 NT_005535 NT_033012 NT_033016
NT_022508


  NT_022423
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_022423AC092416675194413          
S/G/Y/R/B/O NT_022423AC107626675452323AFM092YH7    3229.201 AC107626
S/G/Y/R/B/O NT_022423AC104443677067623          
S/G/Y/R/B/O NT_022423AC104167678057673WI-4094    3245.301 AC104167, AC112214
S/G/Y/R/B/O NT_022423AC046199679198341WI-4853    3245.801 AC046199
S/G/Y/R/B/O NT_022423AC046199679260751RH99503206.47    1 AC046199
S/G/Y/R/B/O NT_022423AC096922680324843RH132093206.3733100.00  1 AC096922
S/G/Y/R/B/O NT_022423AC104166681515333          
S/G/Y/R/B/O NT_022423AC109587682974683AFMA223XH1    3245.801 AC109587
S/G/Y/R/B/O NT_022423AC092060683546903RH414703206.27    1 AC012521, AC067985, AC092060
S/G/Y/R/B/O NT_022423AC092060683992233RH263283208.89    1AC109587, AC012521, AC067985, AC092060, AC109587
S/G/Y/R/B/O NT_022423AC092060683992293RH41729  33073.00  1AC109587, AC012521, AC067985, AC092060, AC109587
S/G/Y/R/B/O NT_022423AC092060684006473RH480413208.89    1AC109587, AC012521, AC092060, AC109587
S/G/Y/R/B/O NT_022423AC092060684016953RH585663211.39    1AC109587, AC012521, AC067985, AC092060, AC109587
S/G/Y/R/B/O NT_022423AC092060684016953WI-16547    3258.401AC109587, AC012521, AC067985, AC092060, AC109587
S/G/Y/R/B/O NT_022423AC092060684018383RH669623205.26    1AC109587, AC012521, AC067985, AC092060, AC109587
S/G/Y/R/B/O NT_022423AC092060684020263RH583453209.92  3245.501AC109587, AC012521, AC067985, AC092060, AC109587
S/G/Y/R/B/O NT_022423AC092060684037143RH366103211.39    1AC109587, AC012521, AC092060, AC109587
S/G/Y/R/B/O NT_022423AC092060684341053RH581963209.13    1AC109587, AC012521, AC067985, AC092060, AC109587
S/G/Y/R/B/O NT_022423AC092060684341053WI-12011    3259.701AC109587, AC012521, AC067985, AC092060, AC109587
S/G/Y/R/B/O NT_022423AC092060684341063RH110043209.13    1AC109587, AC012521, AC067985, AC092060, AC109587
S/G/Y/R/B/O NT_022423AC092060684342753RH669703208.40    1AC109587, AC012521, AC067985, AC092060, AC109587
S/G/Y/R/B/O NT_022423AC092060684845893RH587453210.55  3248.401 AC092060
S/G/Y/R/B/O NT_022423AC092060684851333RH32916  33113.00  1 AC012521, AC092060
S/G/Y/R/B/O NT_022423AC092060684851333RH587683211.39    1 AC012521, AC092060
S/G/Y/R/B/O NT_022423AC092060684851333SGC33714    3256.201 AC012521, AC092060
S/G/Y/R/B/O NT_022423AC092060684879633RH108203209.02    1 AC092060
S/G/Y/R/B/O NT_022423AC092060684881233RH97993209.10    1 AC092060
S/G/Y/R/B/O NT_022423AC092060684882163RH924033211.39    1 AC092060
S/G/Y/R/B/O NT_022423AC112221685483293RH1030203211.35    1 AC112221
S/G/Y/R/B/O NT_022423AC112221685495103RH918493211.39    1 AC112221
S/G/Y/R/B/O NT_022423AC112221685497313TIGR-A004T19    3248.601 AC112221
S/G/Y/R/B/O NT_022423AC112221685497313RH580703211.29    1 AC112221
S/G/Y/R/B/O NT_022423AC112221686279073WI-7458    3248.501 AC112221
S/G/Y/R/B/O NT_022423AC022834686654941          
S/G/Y/R/B/O NT_022423AC023214687572171RH415983209.72    1AC022834, AC112212, AC022834, AC023214, AC112212
S/G/Y/R/B/O NT_022423AC023214687636781RH704503208.08    1AC022834, AC112212, AC022834, AC023214, AC112212
S/G/Y/R/B/O NT_022423AC112212687848051          
S/G/Y/R/B/O NT_022423AC099328688163093          
S/G/Y/R/B/O NT_022423AC104445689723753          
S/G/Y/R/B/O NT_022423 - RH582123200.15  3233.301AC069254, AC099777, AC069254, AC099777
S/G/Y/R/B/O NT_022423 - SGC33276    3233.301AC069254, AC099777, AC114399, AC069254, AC099777, AC114399
S/G/Y/R/B/O NT_022423 - CHLC.GATA87B02    3235.301AC023558, AC105748, AC023558, AC105748
S/G/Y/R/B/O NT_022423 - NIB681    3236.501AC011106, AC026326, AC068773, AC078978, AC107298, AC011106, AC026326, AC068773, AC078978, AC107298
S/G/Y/R/B/O NT_022423 - SGC34070    3237.002AC097015, AC112218, AC097015, AC112218
S/G/Y/R/B/O NT_022423 - TIGR-A003P16    3237.001AC092050, AC097358, AC092050, AC097358
S/G/Y/R/B/O NT_022423 - WI-14613    3238.801AC104302, AC104302
S/G/Y/R/B/O NT_022423 - WI-11311    3239.301AC099781, AC099781
S/G/Y/R/B/O NT_022423 - RH582203200.25  3239.901AC093928, AC093928
S/G/Y/R/B/O NT_022423 - RH662583211.07    0  


  NT_022423 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_022423 - SGC34580    3240.001AC069254, AC114399, AC069254, AC114399
S/G/Y/R/B/O NT_022423 - RH767293200.36    1AC104168, AF152365, AC104168, AF152365
S/G/Y/R/B/O NT_022423 - WI-12448    3240.101AC027614, AC092039, AC018899, AC027614, AC092039
S/G/Y/R/B/O NT_022423 - SGC33668    3240.101AC096888, AC096888
S/G/Y/R/B/O NT_022423 - SGC35049    3241.001AC069438, AC093928, AC069438, AC093928
S/G/Y/R/B/O NT_022423 - WI-16409    3241.100  
S/G/Y/R/B/O NT_022423 - SGC30284    3241.701AC022499, AC112516, AC022499, AC112516
S/G/Y/R/B/O NT_022423 - SGC35083    3242.401AC092049, AC063925, AC092049
S/G/Y/R/B/O NT_022423 - SGC30565    3243.001AC092049, AC063925, AC092049
S/G/Y/R/B/O NT_022423 - SGC38291    3243.001AC104438, AC104438
S/G/Y/R/B/O NT_022423 - WI-5433    3249.201AC016950, AC024222, AC016950, AC024222