Chromosome 19 - RH Maps - Single Contig

Chromosome 19 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_025920	NT_030867	NT_011227	NT_030171	NT_011277	NT_011269	NT_011268	NT_011258
NT_030869	NT_011271	NT_011255	NT_011274	NT_011316	NT_011145	NT_031917	NT_029485
NT_025133	NT_011176	NT_031915	NT_011151	NT_025155	NT_011290	NT_025130	NT_011281
NT_011141	NT_030861	NT_011288	NT_011295	NT_033318	NT_027203	NT_031920	NT_026483
NT_033317	NT_033315	NT_025183	NT_025175	NT_025197	NT_030182	NT_025922	NT_030862
NT_011196	NT_011294	NT_011296	NT_011192	NT_011233	NT_011250	NT_011139	NT_011266
NT_011109	NT_033313	NT_033316	NT_011091	NT_011148	NT_025184	NT_011225	NT_011150
NT_011104

NT_011288

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_011288	AC008761	18758299	2	WI-11104					19	89.90	1		AC008761
S/G/Y/R/B/O	NT_011288	AC008761	18758299	2	RH55959	19	98.00					1		AC008761
S/G/Y/R/B/O	NT_011288	AC008761	18758313	2	RH36761	19	96.63					1
S/G/Y/R/B/O	NT_011288	AC008761	18758392	2	RH25703	19	96.52					1		AC008761
S/G/Y/R/B/O	NT_011288	AC008761	18760744	2	RH17149	19	96.23					1		AC008761
S/G/Y/R/B/O	NT_011288	AC005952	18958799	3	WI-17661					19	89.70	1	AC008761,	AC005952, AC008761
S/G/Y/R/B/O	NT_011288	AC005952	18958799	3	RH55846	19	98.61					1	AC008761,	AC005952, AC008761
S/G/Y/R/B/O	NT_011288	AC005952	18958868	3	RH67256	19	96.63					1	AC008761,	AC005952, AC008761
S/G/Y/R/B/O	NT_011288	AC005952	18959163	3	RH67245	19	96.23					1	AC008761,	AC005952, AC008761
S/G/Y/R/B/O	NT_011288	AC005952	18962563	3	RH2105			19	604.00			1		AC005952, X73637
S/G/Y/R/B/O	NT_011288	AC005952	18962569	3	RH70894	19	97.17					1		AC005952, X73637
S/G/Y/R/B/O	NT_011288	AC007201	18972376	3	RH33564			19	611.00	19	89.80	1		AC007201, U70065
S/G/Y/R/B/O	NT_011288	AC007201	18972549	3	RH70552	19	98.11					1		AC007201, U70065
S/G/Y/R/B/O	NT_011288	AC005796	19039913	3	RH75908	19	124.10					1		AC005796
S/G/Y/R/B/O	NT_011288	AC011540	19047949	3
S/G/Y/R/B/O	NT_011288	AC005602	19089646	3	RH93753	19	100.30					1		AC005602
S/G/Y/R/B/O	NT_011288	AC020904	19144930	3	RH55888	19	100.47			19	106.80	1		AC020904
S/G/Y/R/B/O	NT_011288	AC020904	19144930	3	RH14955			19	438.00			1		AC020904
S/G/Y/R/B/O	NT_011288	AC020904	19176741	3	RH56369	2	194.09			2	266.80	3		AC020904, AC025749
S/G/Y/R/B/O	NT_011288	AC020904	19179272	3	RH24967	12	247.74					2	AC023500, AC073896,	AC020904, AC023500, AC025749, AC073896
S/G/Y/R/B/O	NT_011288	AC020904	19179307	3	RH10074	12	247.48					2	AC023500, AC073896,	AC020904, AC023500, AC025749, AC073896
S/G/Y/R/B/O	NT_011288	AC020904	19205950	3	RH66781	19	100.36					1		AC020904, AC025749
S/G/Y/R/B/O	NT_011288	AC005793	19264556	3	WI-5938					19	92.30	1		AC005793, AC025749
S/G/Y/R/B/O	NT_011288	AC093054	19281790	3
S/G/Y/R/B/O	NT_011288	AC007192	19283520	3
S/G/Y/R/B/O	NT_011288	AC093080	19321229	3
S/G/Y/R/B/O	NT_011288	AC068499	19324001	3	RH14964			19	679.00			1		AC025749, AC068499
S/G/Y/R/B/O	NT_011288	AC068499	19342461	3	RH39068	19	100.90					1		AC068499
S/G/Y/R/B/O	NT_011288	AC068499	19342535	3	RH55999	19	101.45			19	91.70	1		AC068499
S/G/Y/R/B/O	NT_011288	AC068499	19343475	3	RH71434	19	103.08					1		AC068499
S/G/Y/R/B/O	NT_011288	AC068499	19354733	3	RH41833	19	101.45					1		AC068499, AF157816
S/G/Y/R/B/O	NT_011288	AC068499	19356627	3	RH9010			19	674.00			1	AC005759,	AC005759, AC068499, AF157816
S/G/Y/R/B/O	NT_011288	AC005759	19357656	3
S/G/Y/R/B/O	NT_011288	AC008397	19452419	3	RH64873	19	102.54					1		AC008397
S/G/Y/R/B/O	NT_011288	AC008397	19514515	3	RH26150	19	104.13					1		AC008397
S/G/Y/R/B/O	NT_011288	AC008397	19535030	3	RH68131	19	102.21					1	AC010335,	AC008397, AC010335, AF008303
S/G/Y/R/B/O	NT_011288	AC008397	19580434	3	RH39064	19	101.67					1	AC010335,	AC008397, AC010335
S/G/Y/R/B/O	NT_011288	AC008397	19580870	3	RH75078	19	101.99					1	AC010335,	AC008397, AC010335
S/G/Y/R/B/O	NT_011288	AC010335	19589134	2	RH55714	19	102.54			19	107.70	1		AC010335
S/G/Y/R/B/O	NT_011288	AC010335	19590294	2	WI-18990					19	91.70	1		AC010335
S/G/Y/R/B/O	NT_011288	AC005387	19678413	3	RH75863	19	124.01					1		AC005387
S/G/Y/R/B/O	NT_011288	AC005253	19715435	3	WI-13411					19	108.20	1		AC005253
S/G/Y/R/B/O	NT_011288	AC005253	19715435	3	RH55837	19	104.67					1		AC005253
S/G/Y/R/B/O	NT_011288	AC005253	19721105	3	RH55667	19	103.15			19	101.70	1		AC005253, X56997
S/G/Y/R/B/O	NT_011288	AC005253	19721756	3	RH104429	19	102.32					1		AC005253, X56997
S/G/Y/R/B/O	NT_011288	AC005253	19723648	3	RH92993	19	102.21					1		AC005253, AC079451
S/G/Y/R/B/O	NT_011288	AC003112	19738616	3	RH99007	19	121.41					1		AC003112
S/G/Y/R/B/O	NT_011288	AC008998	19767240	2	RH25160	19	103.91					1		AC008998
S/G/Y/R/B/O	NT_011288	AC008998	19767262	2	RH39136	19	104.34					1		AC008998
S/G/Y/R/B/O	NT_011288	AC008998	19767285	2	RH9924	19	103.80					1		AC008998

NT_011288 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_011288	AC008998	19791676	2	RH48500	19	101.78			1		AC008998
S/G/Y/R/B/O	NT_011288		-		RH78495	19	100.36			0
S/G/Y/R/B/O	NT_011288		-		RH13973			19	558.00	1	AC005336,	AC005336, AF467894
S/G/Y/R/B/O	NT_011288		-		RH684			19	563.00	1	AC011537,	AC011537