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  Chromosome 19 - RH Maps - Single Contig
 

Chromosome 19 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_025920 NT_030867 NT_011227 NT_030171 NT_011277 NT_011269 NT_011268 NT_011258
NT_030869 NT_011271 NT_011255 NT_011274 NT_011316 NT_011145 NT_031917 NT_029485
NT_025133 NT_011176 NT_031915 NT_011151 NT_025155 NT_011290 NT_025130 NT_011281
NT_011141 NT_030861 NT_011288 NT_011295 NT_033318 NT_027203 NT_031920 NT_026483
NT_033317 NT_033315 NT_025183 NT_025175 NT_025197 NT_030182 NT_025922 NT_030862
NT_011196 NT_011294 NT_011296 NT_011192 NT_011233 NT_011250 NT_011139 NT_011266
NT_011109 NT_033313 NT_033316 NT_011091 NT_011148 NT_025184 NT_011225 NT_011150
NT_011104


  NT_011104
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_011104AC044792701109411D19S404    19363.601 AC044792
S/G/Y/R/B/O NT_011104AC044792728103151AFMA342YE9    19367.301 AC044792
S/G/Y/R/B/O NT_011104AC025588701467673          
S/G/Y/R/B/O NT_011104AC005261703074323RH2593219287.82    1 AC005261
S/G/Y/R/B/O NT_011104AC005261703081773RH1010519283.91    1  
S/G/Y/R/B/O NT_011104AC005261703118953RH10286419284.01    1 AC005261
S/G/Y/R/B/O NT_011104AC005261703246013RH9314619287.82    1  
S/G/Y/R/B/O NT_011104AC005261703511503RH3912519285.92    1 AC005261
S/G/Y/R/B/O NT_011104AC005261703599113RH452719289.56  19365.401 AC005261
S/G/Y/R/B/O NT_011104AC005261703815103RH9018  192878.00  1 AC005261
S/G/Y/R/B/O NT_011104AC005261703951763RH7670519285.82    1 AC005261
S/G/Y/R/B/O NT_011104AC005261703960023RH1747019283.09    1 AC005261
S/G/Y/R/B/O NT_011104AC005261704066093RH4573919303.03    1AL451007, AC005261, AL451007
S/G/Y/R/B/O NT_011104AC003002704522123          
S/G/Y/R/B/O NT_011104AC004076705396973RH6923019287.74    1 AC004076
S/G/Y/R/B/O NT_011104AC003005705836533RH9851519291.07    1 AC003005
S/G/Y/R/B/O NT_011104AC003682706311323RH5576119291.07192888.0019364.901 AC003682
S/G/Y/R/B/O NT_011104AC003682706827053RH33825  192912.00  1 AC003682
S/G/Y/R/B/O NT_011104AC003682706827313RH9131319288.26    1  
S/G/Y/R/B/O NT_011104AC003682706828883RH3912319287.74    1 AC003682
S/G/Y/R/B/O NT_011104AC003682707107333RH3917719287.74    1 AC003682
S/G/Y/R/B/O NT_011104AC003682707137803RH10357119287.74    1 AC003682
S/G/Y/R/B/O NT_011104AC003682707317993RH1829719283.19    1 AC003682
S/G/Y/R/B/O NT_011104AC003682707318633RH3918119287.74    1 AC003682
S/G/Y/R/B/O NT_011104AC003682707329883RH33718  192912.00  1 AC003682
S/G/Y/R/B/O NT_011104AC004017707762833RH5570319289.61  19366.501 AC004017
S/G/Y/R/B/O NT_011104AC004017707762923RH1034919292.71    1 AC004017
S/G/Y/R/B/O NT_011104AC004017707777393RH1229819287.74    1 AC004017
S/G/Y/R/B/O NT_011104AC004017707796023RH448819292.71  19363.501 AC004017
S/G/Y/R/B/O NT_011104AC004017707796023RH33832  192903.00  1 AC004017
S/G/Y/R/B/O NT_011104AC004017707871123RH9369819291.07    1 AC004017, AL683889
S/G/Y/R/B/O NT_011104AC004017707903843RH5593419287.74  19368.901 AC004017, AL683889
S/G/Y/R/B/O NT_011104AC004017707905683RH1801419287.74    1 AC004017, AL683889
S/G/Y/R/B/O NT_011104AC003006708090833RH9852719288.36    1 AC003006, AL683889
S/G/Y/R/B/O NT_011104AC003006708471853RH4639219296.65    1 AC003006, AL683889
S/G/Y/R/B/O NT_011104AC003006708472493RH74521  192907.00  1 AC003006, AL683889
S/G/Y/R/B/O NT_011104AC093037708748453          
S/G/Y/R/B/O NT_011104AC010645708786023RH5569519289.61  19366.401 AC010645
S/G/Y/R/B/O NT_011104AC010645708829103RH74524  192940.00  1 AC010645, AL683889
S/G/Y/R/B/O NT_011104AC010645708862003RH10439519291.07    2AC010326, AC010522, AC010326, AC010522, AC010645
S/G/Y/R/B/O NT_011104AC010645708864113RH3911219289.46    2AC010326, AC010522, AC010326, AC010522, AC010645
S/G/Y/R/B/O NT_011104AC010645708866143RH6670619289.46    1 AC010645
S/G/Y/R/B/O NT_011104AC010645708929853RH5585119291.07  19364.901 AC010645
S/G/Y/R/B/O NT_011104AC010645708964223RH7799419291.07    2AC010326, AC010326, AC010645, AL683889
S/G/Y/R/B/O NT_011104AC010645709035503RH6803719304.36    1 AC010645
S/G/Y/R/B/O NT_011104AC010645709035523RH9356619289.46    1 AC010645
S/G/Y/R/B/O NT_011104AC010522709160103RH3586319289.46    1 AC010522, AL683889
S/G/Y/R/B/O NT_011104AC010522709382593RH3911219289.46    2AC010326, AC010645, AC010326, AC010522, AC010645
S/G/Y/R/B/O NT_011104AC010522709384773RH10439519291.07    2AC010326, AC010645, AC010326, AC010522, AC010645
S/G/Y/R/B/O NT_011104AC010326710115913RH9868419301.83    1 AC010326


  NT_011104 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_011104AC010326710252633RH4626019300.43    1 AC010326
S/G/Y/R/B/O NT_011104AC010326710664283RH9179719298.52    1AC008969, AC008969, AC010326
S/G/Y/R/B/O NT_011104AC010326710665483RH9895519289.46    1AC008969, AC008969, AC010326
S/G/Y/R/B/O NT_011104AC008969710869433RH7616719288.05    1 AC008969
S/G/Y/R/B/O NT_011104AC008969711003163RH5581119289.61  19366.601 AC008749, AC008969
S/G/Y/R/B/O NT_011104AC008751711577413RH13989  192937.00  2 AC008751, AC009763
S/G/Y/R/B/O NT_011104AC008751711722053RH7963719289.61    1 AC008749, AC008751, AC009763
S/G/Y/R/B/O NT_011104AC008751711722403RH5585519297.07  19363.402 AC008749, AC008751, AC009763
S/G/Y/R/B/O NT_011104AC008751711731473RH5579019297.07  19363.502 AC008749, AC008751, AC009763
S/G/Y/R/B/O NT_011104AC008751711731543RH3599219289.46    2 AC008749, AC008751, AC009763
S/G/Y/R/B/O NT_011104AC008751712156083RH5577619291.00192944.0019365.201 AC008749, AC008751
S/G/Y/R/B/O NT_011104AC008751712157043RH3905719289.46    1 AC008749, AC008751
S/G/Y/R/B/O NT_011104AC020915713024273RH8085019294.61    1 AC020915, AC023149
S/G/Y/R/B/O NT_011104AC020915713848143RH5589819290.96192970.0019366.601 AC020915, AC023149
S/G/Y/R/B/O NT_011104AC020915713849353RH6663719291.00    1 AC020915, AC023149
S/G/Y/R/B/O NT_011104AC020915713889993RH7483719295.02    1 AC020915, AC023149
S/G/Y/R/B/O NT_011104AC020915713927193RH5600519290.96  19366.601 AC020915, AC023149
S/G/Y/R/B/O NT_011104AC010642714166313WI-3037    19363.501 AC010642, AC023149
S/G/Y/R/B/O NT_011104AC010642714313733RH8065719297.17    1AC012313, AC010642, AC012313
S/G/Y/R/B/O NT_011104AC012313714436742RH6509219293.71    1 AC012313
S/G/Y/R/B/O NT_011104AC012313714440532RH5592619290.96  19381.501 AC012313
S/G/Y/R/B/O NT_011104AC012313714838272RH676096492.59    1 AB061853, AC012313
S/G/Y/R/B/O NT_011104AC012313714838672RH5579719290.96  19366.701 AB061853, AC012313
S/G/Y/R/B/O NT_011104AC012313714895442RH10240419294.92    1 AC012313
S/G/Y/R/B/O NT_011104AC012313715072482RH5587119290.59  19378.801 AC012313
S/G/Y/R/B/O NT_011104AC012313715180572RH6637219291.00    1 AC012313
S/G/Y/R/B/O NT_011104AC012313715222182RH9834719290.59    1 AC012313
S/G/Y/R/B/O NT_011104AC012313715225342RH7119619293.71    1 AC012313
S/G/Y/R/B/O NT_011104AC012313715876332RH6691719295.22    1 AC012313
S/G/Y/R/B/O NT_011104AC012313715876382RH1793319297.58    1 AC012313
S/G/Y/R/B/O NT_011104AC012313715876382RH32622  192999.00  1 AC012313
S/G/Y/R/B/O NT_011104AC012313728329392RH1555619293.71    1 AC012313
S/G/Y/R/B/O NT_011104AC004792716885453          
S/G/Y/R/B/O NT_011104AC006115717255773RH5592119284.08  19370.101 AC006115
S/G/Y/R/B/O NT_011104AC006115717255863RH6768619283.91    1 AC006115
S/G/Y/R/B/O NT_011104AC006115717256433RH3591619284.01    1 AC006115
S/G/Y/R/B/O NT_011104AC006115717542803RH6611219290.76    1 AC006115, AF208980
S/G/Y/R/B/O NT_011104AC006115717561423RH3919919284.08    1 AC006115, AF208980
S/G/Y/R/B/O NT_011104AC006115717562243RH14963  192867.0019370.001 AC006115
S/G/Y/R/B/O NT_011104AC006115717583633RH1747419284.01    1 AC006115
S/G/Y/R/B/O NT_011104AC006115717584323RH5577719289.56  19365.401 AC006115
S/G/Y/R/B/O NT_011104AC093061718898493          
S/G/Y/R/B/O NT_011104AC007228718958283RH5772422138.38  22155.902AL008582, AC027178, AL008582
S/G/Y/R/B/O NT_011104AC007228719336963RH5598619284.01  19373.101 AC007228
S/G/Y/R/B/O NT_011104AC007228719355473RH7539819304.58    1 AC007228
S/G/Y/R/B/O NT_011104AC007228719447793RH4826019289.56    1 AC007228
S/G/Y/R/B/O NT_011104AC007228719456563RH3918819283.09    1 AC007228
S/G/Y/R/B/O NT_011104AC007228719859853RH7496719288.05    1 AC007228
S/G/Y/R/B/O NT_011104AC007228720042043RH4868019285.92    1 AC007228
S/G/Y/R/B/O NT_011104AC007228720108333RH9198419289.56    1 AC007228


  NT_011104 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_011104AC005498720223463RH3906719284.01    1 AC005498
S/G/Y/R/B/O NT_011104AC005498720333583RH6613019290.76    1 AC005498
S/G/Y/R/B/O NT_011104AC004696720604473D19S210    19363.101 AC004696
S/G/Y/R/B/O NT_011104AC004696720604473RH1325619285.92    1 AC004696
S/G/Y/R/B/O NT_011104AC098795720874593          
S/G/Y/R/B/O NT_011104AC013256720987163RH7480719302.48    1 AC013256
S/G/Y/R/B/O NT_011104AC006116721415913RH4793719284.01    1 AC006116, AC011457
S/G/Y/R/B/O NT_011104AC006116721696633RH1976  192857.00  1 AC006116, AC011457
S/G/Y/R/B/O NT_011104AC006116721858293RH8862  192852.00  1 AC006116, AC011457
S/G/Y/R/B/O NT_011104AC006116722771753RH1842819284.22    1 AC006116, AC011457
S/G/Y/R/B/O NT_011104AC011506722939953RH6801219284.01    1 AC011506
S/G/Y/R/B/O NT_011104AC011506722940733RH9354619284.01    1 AC011506
S/G/Y/R/B/O NT_011104AC011506723144413RH6994819283.91    1 AC011506
S/G/Y/R/B/O NT_011104AC011506723470653RH5594119283.91  19375.001 AC011506
S/G/Y/R/B/O NT_011104AC024580724079553RH3914419289.30    1 AC023887, AC024580
S/G/Y/R/B/O NT_011104AC024580724080513RH3585719287.82    1 AC023887, AC024580
S/G/Y/R/B/O NT_011104AC024580724185543RH7648419304.02    1 AC023887, AC024580
S/G/Y/R/B/O NT_011104AC024580724431243RH6571019284.08    1 AC023887, AC024580
S/G/Y/R/B/O NT_011104AC024580724813163RH6615019298.94    1 AC023887, AC024580
S/G/Y/R/B/O NT_011104AC011470724999203          
S/G/Y/R/B/O NT_011104AC012310726871123RH9220319289.56    1AC022066, AC012310, AC022066
S/G/Y/R/B/O NT_011104AC022066727568771          
S/G/Y/R/B/O NT_011104AC016630728602813RH14954  192982.00  1 AC016630, AJ277113
S/G/Y/R/B/O NT_011104AC016630728644013RH3909819293.71    1 AC016630
S/G/Y/R/B/O NT_011104AC016629728706462RH7138419291.00    1AC016630, AC016629, AC016630, AF161886
S/G/Y/R/B/O NT_011104AC016629728706862RH3655719293.71    1AC016630, AC016629, AC016630, AF161886
S/G/Y/R/B/O NT_011104AC016629728733222RH3918419290.65    1AC012616, AC016630, AC012616, AC016629, AC016630, AF161886
S/G/Y/R/B/O NT_011104AC016629728926392RH7843619299.69    1AC012616, AC012616, AC016629
S/G/Y/R/B/O NT_011104AC016629728927222RH7478519298.00    1AC012616, AC012616, AC016629
S/G/Y/R/B/O NT_011104AC016629728945442RH3915619290.65    1 AC016629
S/G/Y/R/B/O NT_011104 - RH10192119307.87    0  
S/G/Y/R/B/O NT_011104 - RH31796  192862.00  0  
S/G/Y/R/B/O NT_011104 - RH10207019303.47    1AC011487, AC011487
S/G/Y/R/B/O NT_011104 - RH32452  192883.00  0AC003682, AC003682
S/G/Y/R/B/O NT_011104 - RH10235719299.37    1AC012314, AC009968, AC012314
S/G/Y/R/B/O NT_011104 - RH10255919285.92    0AC005498, AC005498
S/G/Y/R/B/O NT_011104 - RH1181219284.08    0  
S/G/Y/R/B/O NT_011104 - RH1833519287.82    0AC003002, AC003002
S/G/Y/R/B/O NT_011104 - RH2520919301.29    1AC012314, AC009968, AC012314
S/G/Y/R/B/O NT_011104 - RH2672219301.29    1AC012314, AC009968, AC012314
S/G/Y/R/B/O NT_011104 - RH2675819303.58    1AC011468, AC011468
S/G/Y/R/B/O NT_011104 - RH2683619304.91    1AC116338, AC116338
S/G/Y/R/B/O NT_011104 - RH2706719303.47    1AC010487, AP004783, AC010487, AP004783
S/G/Y/R/B/O NT_011104 - RH3904119301.40    1AC116338, AC116342, AC116338, AC116342
S/G/Y/R/B/O NT_011104 - RH3905919287.82    0  
S/G/Y/R/B/O NT_011104 - RH3913019285.92    0  
S/G/Y/R/B/O NT_011104 - RH4538819299.05    0  
S/G/Y/R/B/O NT_011104 - RH4642519293.71    0AC010642, AC010642, AC023149
S/G/Y/R/B/O NT_011104 - RH4732519304.80    0  
S/G/Y/R/B/O NT_011104 - RH4774119302.48    0  


  NT_011104 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_011104 - RH4853619303.47    1AC008440, AC008753, AC022318, AC093393, AC008440, AC008753, AC022318, AC093393
S/G/Y/R/B/O NT_011104 - RH5570219307.75    2AC010619, AC012617, AC068670, AB028893, AC010619, AC012617, AC068670
S/G/Y/R/B/O NT_011104 - RH5570419303.47    1AC008440, AC022318, AC008440, AC009968, AC022318
S/G/Y/R/B/O NT_011104 - RH5573419308.44    1AC011468, AC011468
S/G/Y/R/B/O NT_011104 - RH5578719308.68    1AC008813, AC008813
S/G/Y/R/B/O NT_011104 - RH5579619306.04  19363.401AC008440, AC022318, AC008440, AC022318
S/G/Y/R/B/O NT_011104 - RH5581819308.56  19367.301AC010328, AC010328, AC015589
S/G/Y/R/B/O NT_011104 - RH5582619289.61    2AC010492, AC012314, AC009968, AC010492, AC012314
S/G/Y/R/B/O NT_011104 - SGC35428    19368.201 AF091544
S/G/Y/R/B/O NT_011104 - RH5585019307.87    1AC011460, AC011460
S/G/Y/R/B/O NT_011104 - RH5588919285.82  19368.500  
S/G/Y/R/B/O NT_011104 - WI-15141    19370.101AC008735, AC008735, AC068038
S/G/Y/R/B/O NT_011104 - RP_L28_1    19371.501AC020922, AC116338, AC020922, AC116338
S/G/Y/R/B/O NT_011104 - WI-15387    19373.101AC020922, AC116338, AC020922, AC116338
S/G/Y/R/B/O NT_011104 - WI-5734    19374.901AC020922, AC020922
S/G/Y/R/B/O NT_011104 - SGC35391    19374.904AC011501, AL133414, AL133414, AL133414, AC011501, AL133414, AL133414, AL133414
S/G/Y/R/B/O NT_011104 - RP_S9    19376.802AC010492, AC012314, AB061839, AC009968, AC010492, AC012314
S/G/Y/R/B/O NT_011104 - SGC31670    19381.002AC010492, AC012314, AB061839, AC010492, AC012314
S/G/Y/R/B/O NT_011104 - WI-18576    19382.301AC011487, AC011487
S/G/Y/R/B/O NT_011104 - WI-16992    19382.301AC022150, AC024120, AC021848, AC022150, AC024120
S/G/Y/R/B/O NT_011104 - RH5590519287.85  19383.100  
S/G/Y/R/B/O NT_011104 - RH5593919293.71  19384.600AC012313, AB061853, AC012313
S/G/Y/R/B/O NT_011104 - RH5599719290.76    1AC008735, AC008735, AC068038
S/G/Y/R/B/O NT_011104 - SGC35500    19384.601AC011501, AC011501
S/G/Y/R/B/O NT_011104 - RH6701219295.12    0 More than 15
S/G/Y/R/B/O NT_011104 - SGC30985    19385.201AC011468, AC011468
S/G/Y/R/B/O NT_011104 - RH6788019301.40    1AC012314, AC009968, AC012314
S/G/Y/R/B/O NT_011104 - RH7135719307.75    1AC005946, AC006272, AC005946, AC006272
S/G/Y/R/B/O NT_011104 - RH7143019305.03    0  
S/G/Y/R/B/O NT_011104 - RH7143319301.40    1AC092070, AC092070
S/G/Y/R/B/O NT_011104 - RH7607119303.80    1AC011468, AC011468
S/G/Y/R/B/O NT_011104 - RH7630619301.29    0 More than 15
S/G/Y/R/B/O NT_011104 - RH7790719289.56    0  
S/G/Y/R/B/O NT_011104 - RH7835119289.56    1AC008735, AC008735, AC068038
S/G/Y/R/B/O NT_011104 - RH9121819290.76    1AC008735, AC008735, AC068038
S/G/Y/R/B/O NT_011104 - RH8008319299.16    0  
S/G/Y/R/B/O NT_011104 - RH8013119307.64    1AC011468, AC011468
S/G/Y/R/B/O NT_011104 - RH9218619290.76    1AC008735, AC010525, AC008735, AC010525
S/G/Y/R/B/O NT_011104 - RH9310719301.07    1AC011476, AC011501, AC011476, AC011501
S/G/Y/R/B/O NT_011104 - RH9323519289.61    1AC008735, AC008735, AC068038
S/G/Y/R/B/O NT_011104 - RH9380219303.47    0  
S/G/Y/R/B/O NT_011104 - RH9405819289.56    1AC008735, AC008735, AC068038
S/G/Y/R/B/O NT_011104 - RH9420319305.81    1AC092070, AC092070
S/G/Y/R/B/O NT_011104 - RH9872419289.56    1AC008735, AC008735
S/G/Y/R/B/O NT_011104 - RH9877319289.46    1AC008751, AC008749, AC008751, AC009763