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  Chromosome 6 - RH Maps - Single Contig
 

Chromosome 6 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033125 NT_033164 NT_033126 NT_033128 NT_033144 NT_033156 NT_033142 NT_033120
NT_033135 NT_033151 NT_033162 NT_033163 NT_033143 NT_033124 NT_033129 NT_033138
NT_033159 NT_026313 NT_033155 NT_033173 NT_033140 NT_033153 NT_023442 NT_033146
NT_033136 NT_033149 NT_033154 NT_033160 NT_033134 NT_029317 NT_007592 NT_033137
NT_033139 NT_033147 NT_033158 NT_033161 NT_033145 NT_033141 NT_033123 NT_033130
NT_033127 NT_033122 NT_033152 NT_033121 NT_033148 NT_033171 NT_033132 NT_033943
NT_033172 NT_033948 NT_033131 NT_033946 NT_007540 NT_023463 NT_007158 NT_029990
NT_023399 NT_033133 NT_007299 NT_019424 NT_007563 NT_033944 NT_033947 NT_030710
NT_025741 NT_027046 NT_023451 NT_029991 NT_007422 NT_007302 NT_007627 NT_007583


  NT_007158
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_007158AC019237797795111          
S/G/Y/R/B/O NT_007158AL646090798042563          
S/G/Y/R/B/O NT_007158AL593844798929672          
S/G/Y/R/B/O NT_007158AL593854800488963          
S/G/Y/R/B/O NT_007158AL596205801902353          
S/G/Y/R/B/O NT_007158AL606923802346893          
S/G/Y/R/B/O NT_007158AL391807803869743          
S/G/Y/R/B/O NT_007158AL035469805810623RH604796305.91  6473.201 AL035469
S/G/Y/R/B/O NT_007158AL035469805810813RH161026306.25    1 AL035469
S/G/Y/R/B/O NT_007158AL078598806163063          
S/G/Y/R/B/O NT_007158AL589875806717263          
S/G/Y/R/B/O NT_007158AL356117806744863          
S/G/Y/R/B/O NT_007158AL359714808014653          
S/G/Y/R/B/O NT_007158AL158051810014373D6S467    6462.701 AL158051
S/G/Y/R/B/O NT_007158AL133378811362133RH373196307.74    1 AL133378
S/G/Y/R/B/O NT_007158AL133378811362573RH158366307.51    1 AL133378
S/G/Y/R/B/O NT_007158AL160401811683353RH184256307.74    1 AL160401
S/G/Y/R/B/O NT_007158AL160401811763683RH1037966307.51    1 AL160401
S/G/Y/R/B/O NT_007158AL135780812621483          
S/G/Y/R/B/O NT_007158AL358133814618273RH607056307.97  6457.701 AC021019, AL358133
S/G/Y/R/B/O NT_007158AL358133814650293RH8952  63553.00  1 AC021019, AL358133
S/G/Y/R/B/O NT_007158AL358133814651863RH285346308.20    1 AC021019, AL358133
S/G/Y/R/B/O NT_007158AL358133814651883RH284446308.78    1 AC021019, AL358133
S/G/Y/R/B/O NT_007158AL583831814706853          
S/G/Y/R/B/O NT_007158AL590702814898333          
S/G/Y/R/B/O NT_007158AL359539816014203          
S/G/Y/R/B/O NT_007158AL118519817146443          
S/G/Y/R/B/O NT_007158AL133388818334243          
S/G/Y/R/B/O NT_007158AL136445819217523          
S/G/Y/R/B/O NT_007158AL160262819885393RH9092  63548.00  1 AC067861, AL160262
S/G/Y/R/B/O NT_007158AL160262819930353RH469336308.55    1 AC067861, AL160262
S/G/Y/R/B/O NT_007158AL160262819931153RH1834  63563.00  1 AC067861, AL160262
S/G/Y/R/B/O NT_007158AL160262819934613RH468326308.95    1 AC067861, AL160262
S/G/Y/R/B/O NT_007158AL160262820019993RH462276308.95    1 AC067861, AL160262
S/G/Y/R/B/O NT_007158AL160262820059653RH35181  63563.00  1 AC067861, AL160262
S/G/Y/R/B/O NT_007158AL160262820184243RH410376308.43    1 AC067861, AF036128, AL160262
S/G/Y/R/B/O NT_007158AL080275820270253          
S/G/Y/R/B/O NT_007158AL365226821805683RH74951846.17    4AC004127, AC009872, AC021382, AC068020, AC074200, AC087342, AC093891, AF284563, AL049651, AP003306, AC004127, AC009872, AC021382, AC024971, AC068020, AC069290, AC074200, AC087342, AC093891, AF284563, AL049651, AL365226, AP003306
S/G/Y/R/B/O NT_007158AL078591822949153RH160606309.12    1 AC024971, AL078591
S/G/Y/R/B/O NT_007158AL078591823468423RH751756308.43    1 AC073199, AL078591
S/G/Y/R/B/O NT_007158AL078591823468623RH663826309.12    1 AC073199, AL078591
S/G/Y/R/B/O NT_007158AL583856823844053RH700426308.55    1 AC073199, AL583856
S/G/Y/R/B/O NT_007158AL354943824271393          
S/G/Y/R/B/O NT_007158AL591049825945703RH425226308.66  6460.501 AL591049
S/G/Y/R/B/O NT_007158AL591049825947203RH955  63589.00  1 AL591049
S/G/Y/R/B/O NT_007158AL121961826430523RH372256309.01    1 AC068738, AL121961
S/G/Y/R/B/O NT_007158AL121961826430713RH158226308.66    1 AC068738, AL121961
S/G/Y/R/B/O NT_007158AL121961826432033RH611686308.4363589.006469.001 AC068738, AL121961
S/G/Y/R/B/O NT_007158AL121961826440553RH160676309.80    1 AC068738, AL121961
S/G/Y/R/B/O NT_007158AL121961826454643RH182936308.55    1 AC068738, AL121961


  NT_007158 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_007158AL121961826473243RH612326308.66  6469.101 AC068738, AL121961
S/G/Y/R/B/O NT_007158AL121961826476593RH252326332.88    1 AC068738, AL121961
S/G/Y/R/B/O NT_007158AL121961826476763RH160466308.66    1 AC068738, AL121961
S/G/Y/R/B/O NT_007158AL450320827038163          
S/G/Y/R/B/O NT_007158AL096709828696773RH608026308.66  6465.501 AL096709
S/G/Y/R/B/O NT_007158AL365267829336603          
S/G/Y/R/B/O NT_007158AL589935829831763          
S/G/Y/R/B/O NT_007158AL136164830877673RH607136310.77  6468.401 AL136164
S/G/Y/R/B/O NT_007158AL136164830877883RH605666310.77  6467.901 AL136164
S/G/Y/R/B/O NT_007158AL136164830913053RH989966309.35    1 AL136164
S/G/Y/R/B/O NT_007158AL136164830930883RH359096310.03    1 AL136164
S/G/Y/R/B/O NT_007158AL136164830944083RH607966310.09  6465.701 AL136164
S/G/Y/R/B/O NT_007158AL136164830947893RH467216309.80    1 AL136164
S/G/Y/R/B/O NT_007158AL136164831275203RH612076309.46  6465.701 AC073889, AL136164
S/G/Y/R/B/O NT_007158AL136164831514323RH131446309.86  6456.001 AC073889
S/G/Y/R/B/O NT_007158AL451186831793413          
S/G/Y/R/B/O NT_007158AL035467831890203RH609796309.86  6462.201 AC073889
S/G/Y/R/B/O NT_007158AL354933833442803          
S/G/Y/R/B/O NT_007158AL132794834603873RH374176309.23    1 AC023860, AL132794, AL513529
S/G/Y/R/B/O NT_007158AL132794834751603RH8092612147.93    3AC005840, AC006064, AC073262, AC084824, AC087588, AC005840, AC006064, AC019269, AC073262, AC084824, AC087588, AL132794, AL513529
S/G/Y/R/B/O NT_007158AL160399835205053          
S/G/Y/R/B/O NT_007158AL390056836470003          
S/G/Y/R/B/O NT_007158AL034373837892013AFMB297ZG1    6465.801 AC022976, AL034373
S/G/Y/R/B/O NT_007158AL160405838166743          
S/G/Y/R/B/O NT_007158AL590011838499383          
S/G/Y/R/B/O NT_007158AL445256840048173          
S/G/Y/R/B/O NT_007158AL035633841867863RH169226310.82    1 AL357652
S/G/Y/R/B/O NT_007158AL035633841877453RH639966312.6063644.006479.401 AL035633, AL357652
S/G/Y/R/B/O NT_007158AL035633841878173RH360256309.69    1 AL035633, AL357652
S/G/Y/R/B/O NT_007158AL512289842003403          
S/G/Y/R/B/O NT_007158AL355146842377463          
S/G/Y/R/B/O NT_007158AL445568842950933          
S/G/Y/R/B/O NT_007158AL132673843413343          
S/G/Y/R/B/O NT_007158AL445569844046193          
S/G/Y/R/B/O NT_007158AL671823844515763          
S/G/Y/R/B/O NT_007158AL049845844867243CHLC.GATA11B08    6486.401 AL049845
S/G/Y/R/B/O NT_007158AL049845844867243CHLC.GATA11F10    6496.301 AL049845
S/G/Y/R/B/O NT_007158AL049845844909763RH110096313.13    1 AL049845
S/G/Y/R/B/O NT_007158AL049845845248103RH109986313.13    1 AL049845, AL591515
S/G/Y/R/B/O NT_007158AL513522845490953          
S/G/Y/R/B/O NT_007158AL360232846072733          
S/G/Y/R/B/O NT_007158AL360236847649573          
S/G/Y/R/B/O NT_007158AL365232850280623RH127036316.15    1 AL365232
S/G/Y/R/B/O NT_007158AC019205850426283RH374116316.88    1 AC019205, AL133336
S/G/Y/R/B/O NT_007158AC019205850789543RH445156330.75    1 AC019205, AL133336
S/G/Y/R/B/O NT_007158AC019205850796293RH610826314.85  6482.901 AC019205, AL133336
S/G/Y/R/B/O NT_007158AC019205850798503RH167386325.68    1 AC019205, AL133336
S/G/Y/R/B/O NT_007158AC019205851398323RH1023966326.52    1 AC019205, AC068247, AL133336
S/G/Y/R/B/O NT_007158AC019205852112173RH453416316.88    1AL603910, AC019205, AL138833, AL603910
S/G/Y/R/B/O NT_007158AL603910852875283RH408446312.67    1 AC025535, AC068247, AF442963, AL603910


  NT_007158 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_007158AL603910853015873RH611126316.46  6482.601 AL603910
S/G/Y/R/B/O NT_007158AL603910853016033RH409366317.63    1 AC025535, AL603910
S/G/Y/R/B/O NT_007158AL603910853026303RH410216315.08    1 AC025535, AL603910
S/G/Y/R/B/O NT_007158AL121972853801941RH992626319.58    1 AC025535, AC034271, AL121972, AL138833
S/G/Y/R/B/O NT_007158AL121972853810301RH408996317.61    1 AC025535, AC034271, AL121972, AL138833
S/G/Y/R/B/O NT_007158AL121972853810611RH457186319.37    1 AC025535, AC034271, AL121972, AL138833
S/G/Y/R/B/O NT_007158AL121972853826401RH749646588.15    2AL445123, AC011483, AC074380, AL121972, AL445123
S/G/Y/R/B/O NT_007158AL590428854679303RH131786322.1163733.00  1 AL590428
S/G/Y/R/B/O NT_007158AL590428855475423RH420436312.90    1 AL590428
S/G/Y/R/B/O NT_007158AL590428855475423RH33566  63717.00  1 AL590428
S/G/Y/R/B/O NT_007158AL591480856146573RH926006323.12    1AC012408, AC012408, AL591480
S/G/Y/R/B/O NT_007158AC012408856895341          
S/G/Y/R/B/O NT_007158AL596449857600153RH640166315.0863752.006506.701 AL596449
S/G/Y/R/B/O NT_007158AL590552857668203          
S/G/Y/R/B/O NT_007158AL357507860815483RH1039396322.81    1 AC024325, AL354955, AL357507
S/G/Y/R/B/O NT_007158AL357563860864423          
S/G/Y/R/B/O NT_007158AL133407861569862          
S/G/Y/R/B/O NT_007158AL589982863203173          
S/G/Y/R/B/O NT_007158AL356277865027662RH1039866330.13    1 AL356277
S/G/Y/R/B/O NT_007158AL590684865298473          
S/G/Y/R/B/O NT_007158AL356473865522483          
S/G/Y/R/B/O NT_007158AL583838867534263          
S/G/Y/R/B/O NT_007158AL096771868966243RH766926330.35    1 AL096771, AL353703
S/G/Y/R/B/O NT_007158AL096771868966623RH473296325.06    1 AL096771, AL353703
S/G/Y/R/B/O NT_007158AL096771868986103RH759226327.76    1 AL096771, AL353703
S/G/Y/R/B/O NT_007158AL096771869518103RH480756330.13    1 AL096771, AL353703
S/G/Y/R/B/O NT_007158AL354664869836763          
S/G/Y/R/B/O NT_007158AL080250870224883RH637296319.58    1 AL080250, AL136448
S/G/Y/R/B/O NT_007158AL080250870500773RH410346309.69    1 AF134406, AL080250
S/G/Y/R/B/O NT_007158AL080250870652663RH785106322.81    1 AL080250
S/G/Y/R/B/O NT_007158AL080250870659033RH13762  63777.00  1 AL080250
S/G/Y/R/B/O NT_007158AL080250870659523RH129016324.04    1  
S/G/Y/R/B/O NT_007158AL080250870672723RH249686319.58    1 AL080250
S/G/Y/R/B/O NT_007158AL589649871193233          
S/G/Y/R/B/O NT_007158AL445465872096823RH734  63774.00  1 AL445465
S/G/Y/R/B/O NT_007158AL356057874100313WI-548    6508.101 AC026069, AL133337, AL356057
S/G/Y/R/B/O NT_007158AL356057874561443RH612116325.38  6507.801 AC026069, AL133337, AL356057
S/G/Y/R/B/O NT_007158AL356057874561813RH409866326.30    1 AC026069, AL133337, AL356057
S/G/Y/R/B/O NT_007158AL356057874562823RH467716326.19    1 AC026069, AL133337, AL356057
S/G/Y/R/B/O NT_007158AL355797874750883          
S/G/Y/R/B/O NT_007158AL589656874907993RH609836327.68  6507.501 AC026069, AL589656
S/G/Y/R/B/O NT_007158AL589656874918473RH639926328.9663780.006508.101 AC026069, AL589656
S/G/Y/R/B/O NT_007158AL589656875150513RH161316328.96    1 AC026069, AL589656
S/G/Y/R/B/O NT_007158AL109897875278873RH372286329.36    1 AC026069, AL109897
S/G/Y/R/B/O NT_007158AL109897875285933RH699736328.81    1 AC026069, AL109897
S/G/Y/R/B/O NT_007158AL109897876270333RH160536329.36    1 AL109897
S/G/Y/R/B/O NT_007158AL136093877052853RH756556329.76    1 AL136093
S/G/Y/R/B/O NT_007158AL136093877282793RH409476331.09    1 AF229111, AL136093, AL359817
S/G/Y/R/B/O NT_007158AL136093877287403RH751266334.34    1 AL136093, AL359817
S/G/Y/R/B/O NT_007158AL392166877310483          


  NT_007158 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_007158AL356962878542123RH1034416332.99    1 AL157379, AL356962, AL359817
S/G/Y/R/B/O NT_007158AL591142880079143          
S/G/Y/R/B/O NT_007158AL591046880355183          
S/G/Y/R/B/O NT_007158AC023651882280841          
S/G/Y/R/B/O NT_007158 - RH104586306.13    1AC037467, U53331, AC037467, U53331
S/G/Y/R/B/O NT_007158 - RH107296315.30    1AC087620, AP001331, AC018588, AC020991, AC083931, AC087620, AP001331
S/G/Y/R/B/O NT_007158 - RH609716310.55  6506.400AP001331, AC018588, AC018885, AP001331
S/G/Y/R/B/O NT_007158 - RH921496315.19    0