Home    Genome Browser    BLAT Search    Help
  Chromosome 18 - RH Maps - Single Contig
 

Chromosome 18 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_011005 NT_011036 NT_030854 NT_025000 NT_024990 NT_024982 NT_011090 NT_025112
NT_011024 NT_030853 NT_010870 NT_025037 NT_033304 NT_019631 NT_010956 NT_010918
NT_010859 NT_028384 NT_024983 NT_031911 NT_011044 NT_033311 NT_010966 NT_010924
NT_030852 NT_010934 NT_025022 NT_010911 NT_024981 NT_010988 NT_028380 NT_010902
NT_033310 NT_024989 NT_033306 NT_033307 NT_010874 NT_033905 NT_030857 NT_025058
NT_010893 NT_011059 NT_011085 NT_033908 NT_033907 NT_025116 NT_010895 NT_033906
NT_033911 NT_033308 NT_024992 NT_033910 NT_033909 NT_025001 NT_010948 NT_033300
NT_025028 NT_010940 NT_025004 NT_028385 NT_025024 NT_024997 NT_024980 NT_024988
NT_033302 NT_010883 NT_010879


  NT_033905
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_033905AP002400483474451          
S/G/Y/R/B/O NT_033905AP001450483555581          
S/G/Y/R/B/O NT_033905AC011011483670901RH5564218347.85181874.0018345.801AC068154, AC090227, AP001450, AP001450, AP001452, AP001847, AP002400, AC011011, AC068154, AC068344, AC079827, AC090227, AP001450, AP001450, AP001452, AP001847, AP002400
S/G/Y/R/B/O NT_033905AC011011484063711RH5536718351.23  18353.001AC068154, AC090227, AP001450, AP001452, AP001847, AP002400, AC011011, AC068154, AC068344, AC079827, AC090227, AP001450, AP001452, AP001847, AP002400
S/G/Y/R/B/O NT_033905AC011011484098451RH1796218347.65    1AC068154, AC090227, AP001450, AP001452, AP001847, AP002400, AC011011, AC068154, AC068344, AC079827, AC090227, AP001450, AP001452, AP001847, AP002400
S/G/Y/R/B/O NT_033905AC068154483863121RH5558418347.85  18345.801AC090227, AC068154, AC068344, AC090227
S/G/Y/R/B/O NT_033905AC092705484369253          
S/G/Y/R/B/O NT_033905AP001452485374111RH4243518350.08  18345.801AC068154, AC092705, AP002440, AC068154, AC068344, AC092705, AP001452, AP002440
S/G/Y/R/B/O NT_033905AP001452485374111RH610  181870.00  1AC068154, AC092705, AP002440, AC068154, AC068344, AC092705, AP001452, AP002440
S/G/Y/R/B/O NT_033905AP002440485573801          
S/G/Y/R/B/O NT_033905AC084115485619151          
S/G/Y/R/B/O NT_033905AC091044485779961          
S/G/Y/R/B/O NT_033905AC105224486172222          
S/G/Y/R/B/O NT_033905AC044841486445911          
S/G/Y/R/B/O NT_033905AP002393486931861          
S/G/Y/R/B/O NT_033905AC090246486936621          
S/G/Y/R/B/O NT_033905AC105227488550702RH5555018360.98  18356.901AC090246, AP002393, AC015962, AC090246, AC105227, AP002393
S/G/Y/R/B/O NT_033905AC105227488551342RH1691518345.13    1AC090246, AP002393, AC015962, AC090246, AC105227, AP002393
S/G/Y/R/B/O NT_033905AC105227488567642RH6725818345.08    1AC090246, AP002393, AC015962, AC090246, AC105227, AP002393
S/G/Y/R/B/O NT_033905AC105227488573712RH9411818345.39    1AC090246, AC015962, AC090246, AC105227, AF120981
S/G/Y/R/B/O NT_033905AC105227488686162RH9175818345.39    1AC090246, AP002393, AC015962, AC090246, AC105227, AJ132338, AP002393
S/G/Y/R/B/O NT_033905AC105227489803042RH8069  181881.00  1AC013759, AC040961, AP001488, AC013759, AC040961, AC105227, AP001488
S/G/Y/R/B/O NT_033905AP001488488887371          
S/G/Y/R/B/O NT_033905AC013759490140132          
S/G/Y/R/B/O NT_033905AC040961490797021          
S/G/Y/R/B/O NT_033905AC090638491057792          
S/G/Y/R/B/O NT_033905AP001374491252871RH4498018359.93    2AB043547, AB043547, AC091551, AC091551, AP001374
S/G/Y/R/B/O NT_033905AP001374496785641RH6674918358.19    1 AC091551, AC091551, AP001374
S/G/Y/R/B/O NT_033905AC090395492951021RH8097518358.19    1AC012433, AC012433, AC015960, AC090395, AP001499
S/G/Y/R/B/O NT_033905AC090395492980941WI-4796    18374.201AC012433, AC012433, AC015960, AC090395, AP001499
S/G/Y/R/B/O NT_033905AC092708491322841          
S/G/Y/R/B/O NT_033905AC012433491794532          
S/G/Y/R/B/O NT_033905AC015864493268232RH8009418380.83    1AC090395, AC015864, AC015960, AC068679, AC090395, AP001499
S/G/Y/R/B/O NT_033905AC015864493268832RH5561018357.69181903.0018374.101AC090395, AC015864, AC015960, AC068679, AC090395, AP001499
S/G/Y/R/B/O NT_033905AC015864493282592RH3927218358.39    1AC090395, AC015864, AC068679, AC090395, AP001499
S/G/Y/R/B/O NT_033905AC015864493283602RH3926318358.39    1AC090395, AC015864, AC068679, AC090395, AP001499
S/G/Y/R/B/O NT_033905AC015864493284872RH7668518379.49    1AC090395, AC015864, AC068679, AC090395, AP001499
S/G/Y/R/B/O NT_033905AC015864493919902RH5543818358.39  18374.101AC090395, AP001169, AC015864, AC015960, AC068679, AC090395, AP001169, AP001499
S/G/Y/R/B/O NT_033905AC015864494783512RH10418918360.77    1AP001169, AC015864, AC068679, AC087687, AP001169, AP001845
S/G/Y/R/B/O NT_033905AP001169494885163          
S/G/Y/R/B/O NT_033905AC040919495041721          
S/G/Y/R/B/O NT_033905AB043547495439963RH7138318352.01    2AC040919, AL513132, AB043547, AC040919, AC087687, AL355584, AL513132, AP001845, AP002401
S/G/Y/R/B/O NT_033905AB043547495443743RH33754  181899.00  1AC040919, AB043547, AC040919, AC087687, AP001845, AP002401
S/G/Y/R/B/O NT_033905AB043547495445413RH6703818358.71    1AC040919, AB043547, AC040919, AC087687, AP001845, AP002401
S/G/Y/R/B/O NT_033905AB043547495468323WI-4556    18374.101AC040919, AB043547, AC040919, AC087687, AP001845, AP002401
S/G/Y/R/B/O NT_033905AB043547495835623RH5543718358.19  18374.101AC040919, AP001374, AB043547, AC040919, AC087687, AC091551, AP001374, AP001845, AP002401
S/G/Y/R/B/O NT_033905AB043547496199493RH6593718359.93    1AP001374, AB043547, AC091551, AC091551, AP001374, AP001845
S/G/Y/R/B/O NT_033905AB043547496571423RH4498018359.93    2AP001374, AB043547, AC091551, AC091551, AP001374
S/G/Y/R/B/O NT_033905AC090330497551921D18S474    18370.101AC080062, AP001339, AC080062, AC090330, AP001339
S/G/Y/R/B/O NT_033905AC090330497551921RH1362918355.86181907.00  1AC080062, AP001339, AC080062, AC090330, AP001339


  NT_033905 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_033905AC020615497142281          
S/G/Y/R/B/O NT_033905AC080062497163791          
S/G/Y/R/B/O NT_033905AC018522497173221          
S/G/Y/R/B/O NT_033905AP001339497184411          
S/G/Y/R/B/O NT_033905AC090465497959321RH5550018358.19181907.0018371.101AC080062, AC090330, AP001339, AC080062, AC090330, AC090465, AP001339
S/G/Y/R/B/O NT_033905AC109315499901722WI-4480    18363.401AC018522, AP001353, AC012102, AC018522, AC087306, AC109315, AP001353
S/G/Y/R/B/O NT_033905AP001353500799041          
S/G/Y/R/B/O NT_033905AC011260500813773          
S/G/Y/R/B/O NT_033905AC027216502579323RH4767018357.98    1 AC021843, AC027216, AC090770, AP001378
S/G/Y/R/B/O NT_033905AC022701504085603          
S/G/Y/R/B/O NT_033905AC080051505564333          
S/G/Y/R/B/O NT_033905AC105032505793003          
S/G/Y/R/B/O NT_033905AC105039506312882          
S/G/Y/R/B/O NT_033905AC090660507308552          
S/G/Y/R/B/O NT_033905AC078999508835082WI-16306    18360.901AC090660, AC011143, AC078999, AC090660, AP001593
S/G/Y/R/B/O NT_033905AC078999508835082RH5548718374.94    1AC090660, AC011143, AC078999, AC090660, AP001593
S/G/Y/R/B/O NT_033905AC021486510907963RH33855  181932.00  1 AC015567, AC019239, AC021486, AP001375
S/G/Y/R/B/O NT_033905AC091647511132383CHLC.GATA6D09    18382.901 AP001375
S/G/Y/R/B/O NT_033905AC011155513460003WI-5257    18384.901 AC011155, AC015953, AC090219, AP001934
S/G/Y/R/B/O NT_033905AC011155513482963WI-4115    18391.001 AC011155, AC015953, AC090219, AP001934
S/G/Y/R/B/O NT_033905AC016383513938202          
S/G/Y/R/B/O NT_033905AC090227514967591WI-4064    18355.401AC011011, AP001847, AC011011, AC079827, AC090227, AP001847
S/G/Y/R/B/O NT_033905AP001847516226611          
S/G/Y/R/B/O NT_033905AC091170516650261RH5542818347.75    1AP001814, AC091170, AP001814
S/G/Y/R/B/O NT_033905AC091170516650261WI-8656    18418.701AP001814, AC091170, AP001814
S/G/Y/R/B/O NT_033905AC091170516797341RH4601218347.85    1AP001814, AC091170, AP001814
S/G/Y/R/B/O NT_033905AC091170517737921WI-9687    18345.801 AB061824, AC091170
S/G/Y/R/B/O NT_033905AC091170517803141RH7003718347.85    2AP001814, AC091170, AP001814
S/G/Y/R/B/O NT_033905AC091170517805441RH5562618349.26  18345.402AP001814, AC091170, AP001814
S/G/Y/R/B/O NT_033905AP001814518993321RH5562618349.26  18345.402AC091170, AC091170, AP001814
S/G/Y/R/B/O NT_033905AP001814518995451RH7003718347.85    2AC091170, AC091170, AP001814
S/G/Y/R/B/O NT_033905 - RH4646118358.68    0AP001374, AC091551, AC091551, AP001374
S/G/Y/R/B/O NT_033905 - WI-21880    18357.601AC024384, AC093567, AC024384, AC093567
S/G/Y/R/B/O NT_033905 - RH5547118361.40    2AC021934, AC064800, AC090311, AC021934, AC064800, AC090311, AC090412, AP001354
S/G/Y/R/B/O NT_033905 - WI-16430    18359.901AC098848, AP001910, AC098848, AP001910
S/G/Y/R/B/O NT_033905 - RH5556118361.50    1AC015959, AC021763, AP001379, AC015959, AC021763, AP001379, AP002438
S/G/Y/R/B/O NT_033905 - WI-11075    18368.200  
S/G/Y/R/B/O NT_033905 - RH9825118347.95    0  
S/G/Y/R/B/O NT_033905 - D18S487    18377.901AC021325, AC087688, AC021325, AC087688, AP002408
S/G/Y/R/B/O NT_033905 - AFM318XD5    18382.900